Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000234091
Gene ID: ENSG00000115738
Gene Name: ID2
Sequence (UNICHARACTER ENCODING) GCGCGCUGAGUGACGGCGCGGUUGCCAUGGCAGCCGCCUGAGCGGCGCCGCGAGGACAAGGCUGCAGGGCGGCGUGAAUGGGCGGCGUCACGCGCCUGGCGCCAGAGAGUCUGCUCCGGGGCUCCGGCUCCGGCCCCGCCGCGGCCUGGCCCGCGCGCCGCCGCCGCCGCCACCGCCGCCGCCAAUUCAUCACCUGUCAGGGAUCACUCGCGGGGUCACGGGCGGAAUGGACACAGCUGUGAGAACAAAACCCGGGAAAGAAAGGCGAACGCUCCCCAUUGCGCCAGAUGUGCAGGGAGGЖCCUUGAGACGCGCCCCCCGCCCCCGCAGGCUCCUCCCGCCCCCCGGCGCAUCACGCGGGGGUGGCAAAGGCGGCCUGGCCAGCGCGGAGCUCCCGGCCCGGAGCUGCUUCUGAUUACCGCGAGGGGCCCGGACGCGAGAGCCGCCGCGGGGCCUGCCCUAGAGGCGGAGUGAUGAACUGUGGCUUCCCCCCUGCGGUGCUGAACUCGCCCGUGUAGCUGUGAUUUUAGAGCUGCCGACAGCUCUAAGCUGGGCUCGCGCCCCGCCCACCCCGCGGGGAUUGGCUGCGAACGCGGAAGAACCAAGCCCACGCCCCGCGCCCGCGCCCACCAAUGGAAGCGCCCGCUCGUCUUGAUAGACGUGCCACCUUCCGCCAAUGGGGACGAAGGGAAGCUCCAGCGUGUGGCCCCGGCGAGUGCGGAUAAAAGCCGCCCCGCCGGGCUCGGGCUUCЖUUCUGAGCCGAGCCCGGUGCCAAGCGCAGCUAGCUCAGCAGGCGGCAGCGGCGGCCUGAGCUUCAGGGCAGCCAGCUCCCUCCCGGUCUCGCCUUCCCUCGCGGUCAGCAUGAAAGCCUUCAGUCCCGUGAGGUCCGUUAGGAAAAACAGCCUGUCGGACCACAGCCUGGGCAUCUCCCGGAGCAAAACCCCUGUGGACGACCCGAUGAGCCUGCUAUACAACAUGAACGACUGCUACUCCAAGCUCAAGGAGCUGGUGCCCAGCAUCCCCCAGAACAAGAAGGUGAGCAAGAUGGAAAUCCUGCAGCACGUCAUCGACUACAUCUUGGACCUGCAGAUCGCCCUGGACUCGCAPCCCACUAUUGUCAGCCUGCAUCACCAGAGACCCGGGCAGAЖCCAGGCGUCCAGGACGCCGCUGACCACCCUCAACACGGAUAUCAGCAPCCUGUCCUUGCAGGCUUCUGAAUUCCCUUCUGAGUUAAUGUCAAAUGACAGCAAAGCACUGUGUGGCUGAAUAAGCGGUGUUCAUGAUUUCUUUUAUUCUUUGCACAACAACAACAACAACAAAUUCACGGAAUCUUUUAЖGUGCUGAACUUAUUUUUCAACCAUUUCACAAGGAGGACAAGUUGAAUGGЖCCUUUUUAAAAAGAAAAAAAAAAUGGAAGGAAAACUAAGAAUGAUCAUCUUCCCAGGGUGUUCUCUUACUUGGЖCUGUGAUAUUCGUUAUUUAUGAAAAAGЖCUUUUAAAUGCCCUUUCUGCAGUUGGAAGGUUUUCUPUAUAUACUAUUCCCACCAUGGGGAGCGAAAACGUUAAAAUCACЖAGGAAUUGCCCAAUCUAAGCAGЖCUUUGCCUUUUUUCAAAGGUGGAGCGUGAAUACCAGAAGGAUCCAGUAUUCAGUCACUUAAAUGAAGUCUUUUGGUCAGAAAUUACCUUUUUGACACAAGCCUACUGAAUGCUGUGUAUAUAUUUAUAUAUAAAUAUAUCUAUUUGAGUGAAACCUUGUGAACUCUPUAAUUAGAGUUUUCUUGUAUAGUGGCAGAGAUGUCUAUUUCUGCAUUCAAAAGUGUAAUGAUGUACUUAUUCAUGCUAAACUUUUUAUAAAAGUUUAGUUGUAAACUUAACCCUUUUAUACAAAAUAAAUCAAGUGUGUUUAUUGAAUGGUGAUUGCCUGCUPUAUUUCAGAGGACCAGUGCUUUGAUUUUUAUUAUGCUAUGUUAUAACUGAACCCAAAUAAAUACAAGUUCAAAUUUAUGUAGACUGUAUAAGAUUAUAAUAAAACAUGUCUGAAGUCAA
Sequence (SHORT NAMES ENCODING) GCGCGCUGAGUGACGGCGCGGUUGCCAUGGCAGCCGCCUGAGCGGCGCCGCGAGGACAAGGCUGCAGGGCGGCGUGAAUGGGCGGCGUCACGCGCCUGGCGCCAGAGAGUCUGCUCCGGGGCUCCGGCUCCGGCCCCGCCGCGGCCUGGCCCGCGCGCCGCCGCCGCCGCCACCGCCGCCGCCAAUUCAUCACCUGUCAGGGAUCACUCGCGGGGUCACGGGCGGAAUGGACACAGCUGUGAGAACAAAACCCGGGAAAGAAAGGCGAACGCUCCCCAUUGCGCCAGAUGUGCAGGGAGGm6ACCUUGAGACGCGCCCCCCGCCCCCGCAGGCUCCUCCCGCCCCCCGGCGCAUCACGCGGGGGUGGCAAAGGCGGCCUGGCCAGCGCGGAGCUCCCGGCCCGGAGCUGCUUCUGAUUACCGCGAGGGGCCCGGACGCGAGAGCCGCCGCGGGGCCUGCCCUAGAGGCGGAGUGAUGAACUGUGGCUUCCCCCCUGCGGUGCUGAACUCGCCCGUGUAGCUGUGAUUUUAGAGCUGCCGACAGCUCUAAGCUGGGCUCGCGCCCCGCCCACCCCGCGGGGAUUGGCUGCGAACGCGGAAGAACCAAGCCCACGCCCCGCGCCCGCGCCCACCAAUGGAAGCGCCCGCUCGUCUUGAUAGACGUGCCACCUUCCGCCAAUGGGGACGAAGGGAAGCUCCAGCGUGUGGCCCCGGCGAGUGCGGAUAAAAGCCGCCCCGCCGGGCUCGGGCUUCm6AUUCUGAGCCGAGCCCGGUGCCAAGCGCAGCUAGCUCAGCAGGCGGCAGCGGCGGCCUGAGCUUCAGGGCAGCCAGCUCCCUCCCGGUCUCGCCUUCCCUCGCGGUCAGCAUGAAAGCCUUCAGUCCCGUGAGGUCCGUUAGGAAAAACAGCCUGUCGGACCACAGCCUGGGCAUCUCCCGGAGCAAAACCCCUGUGGACGACCCGAUGAGCCUGCUAUACAACAUGAACGACUGCUACUCCAAGCUCAAGGAGCUGGUGCCCAGCAUCCCCCAGAACAAGAAGGUGAGCAAGAUGGAAAUCCUGCAGCACGUCAUCGACUACAUCUUGGACCUGCAGAUCGCCCUGGACUCGCAYCCCACUAUUGUCAGCCUGCAUCACCAGAGACCCGGGCAGAm6ACCAGGCGUCCAGGACGCCGCUGACCACCCUCAACACGGAUAUCAGCAYCCUGUCCUUGCAGGCUUCUGAAUUCCCUUCUGAGUUAAUGUCAAAUGACAGCAAAGCACUGUGUGGCUGAAUAAGCGGUGUUCAUGAUUUCUUUUAUUCUUUGCACAACAACAACAACAACAAAUUCACGGAAUCUUUUAm6AGUGCUGAACUUAUUUUUCAACCAUUUCACAAGGAGGACAAGUUGAAUGGm6ACCUUUUUAAAAAGAAAAAAAAAAUGGAAGGAAAACUAAGAAUGAUCAUCUUCCCAGGGUGUUCUCUUACUUGGm6ACUGUGAUAUUCGUUAUUUAUGAAAAAGm6ACUUUUAAAUGCCCUUUCUGCAGUUGGAAGGUUUUCUYUAUAUACUAUUCCCACCAUGGGGAGCGAAAACGUUAAAAUCACm6AAGGAAUUGCCCAAUCUAAGCAGm6ACUUUGCCUUUUUUCAAAGGUGGAGCGUGAAUACCAGAAGGAUCCAGUAUUCAGUCACUUAAAUGAAGUCUUUUGGUCAGAAAUUACCUUUUUGACACAAGCCUACUGAAUGCUGUGUAUAUAUUUAUAUAUAAAUAUAUCUAUUUGAGUGAAACCUUGUGAACUCUYUAAUUAGAGUUUUCUUGUAUAGUGGCAGAGAUGUCUAUUUCUGCAUUCAAAAGUGUAAUGAUGUACUUAUUCAUGCUAAACUUUUUAUAAAAGUUUAGUUGUAAACUUAACCCUUUUAUACAAAAUAAAUCAAGUGUGUUUAUUGAAUGGUGAUUGCCUGCUYUAUUUCAGAGGACCAGUGCUUUGAUUUUUAUUAUGCUAUGUUAUAACUGAACCCAAAUAAAUACAAGUUCAAAUUUAUGUAGACUGUAUAAGAUUAUAAUAAAACAUGUCUGAAGUCAA
Sequence (MODOMICS CODE ENCODING) GCGCGCUGAGUGACGGCGCGGUUGCCAUGGCAGCCGCCUGAGCGGCGCCGCGAGGACAAGGCUGCAGGGCGGCGUGAAUGGGCGGCGUCACGCGCCUGGCGCCAGAGAGUCUGCUCCGGGGCUCCGGCUCCGGCCCCGCCGCGGCCUGGCCCGCGCGCCGCCGCCGCCGCCACCGCCGCCGCCAAUUCAUCACCUGUCAGGGAUCACUCGCGGGGUCACGGGCGGAAUGGACACAGCUGUGAGAACAAAACCCGGGAAAGAAAGGCGAACGCUCCCCAUUGCGCCAGAUGUGCAGGGAGG2000000006ACCUUGAGACGCGCCCCCCGCCCCCGCAGGCUCCUCCCGCCCCCCGGCGCAUCACGCGGGGGUGGCAAAGGCGGCCUGGCCAGCGCGGAGCUCCCGGCCCGGAGCUGCUUCUGAUUACCGCGAGGGGCCCGGACGCGAGAGCCGCCGCGGGGCCUGCCCUAGAGGCGGAGUGAUGAACUGUGGCUUCCCCCCUGCGGUGCUGAACUCGCCCGUGUAGCUGUGAUUUUAGAGCUGCCGACAGCUCUAAGCUGGGCUCGCGCCCCGCCCACCCCGCGGGGAUUGGCUGCGAACGCGGAAGAACCAAGCCCACGCCCCGCGCCCGCGCCCACCAAUGGAAGCGCCCGCUCGUCUUGAUAGACGUGCCACCUUCCGCCAAUGGGGACGAAGGGAAGCUCCAGCGUGUGGCCCCGGCGAGUGCGGAUAAAAGCCGCCCCGCCGGGCUCGGGCUUC2000000006AUUCUGAGCCGAGCCCGGUGCCAAGCGCAGCUAGCUCAGCAGGCGGCAGCGGCGGCCUGAGCUUCAGGGCAGCCAGCUCCCUCCCGGUCUCGCCUUCCCUCGCGGUCAGCAUGAAAGCCUUCAGUCCCGUGAGGUCCGUUAGGAAAAACAGCCUGUCGGACCACAGCCUGGGCAUCUCCCGGAGCAAAACCCCUGUGGACGACCCGAUGAGCCUGCUAUACAACAUGAACGACUGCUACUCCAAGCUCAAGGAGCUGGUGCCCAGCAUCCCCCAGAACAAGAAGGUGAGCAAGAUGGAAAUCCUGCAGCACGUCAUCGACUACAUCUUGGACCUGCAGAUCGCCCUGGACUCGCA2000000009UCCCACUAUUGUCAGCCUGCAUCACCAGAGACCCGGGCAGA2000000006ACCAGGCGUCCAGGACGCCGCUGACCACCCUCAACACGGAUAUCAGCA2000000009UCCUGUCCUUGCAGGCUUCUGAAUUCCCUUCUGAGUUAAUGUCAAAUGACAGCAAAGCACUGUGUGGCUGAAUAAGCGGUGUUCAUGAUUUCUUUUAUUCUUUGCACAACAACAACAACAACAAAUUCACGGAAUCUUUUA2000000006AGUGCUGAACUUAUUUUUCAACCAUUUCACAAGGAGGACAAGUUGAAUGG2000000006ACCUUUUUAAAAAGAAAAAAAAAAUGGAAGGAAAACUAAGAAUGAUCAUCUUCCCAGGGUGUUCUCUUACUUGG2000000006ACUGUGAUAUUCGUUAUUUAUGAAAAAG2000000006ACUUUUAAAUGCCCUUUCUGCAGUUGGAAGGUUUUCU2000000009UUAUAUACUAUUCCCACCAUGGGGAGCGAAAACGUUAAAAUCAC2000000006AAGGAAUUGCCCAAUCUAAGCAG2000000006ACUUUGCCUUUUUUCAAAGGUGGAGCGUGAAUACCAGAAGGAUCCAGUAUUCAGUCACUUAAAUGAAGUCUUUUGGUCAGAAAUUACCUUUUUGACACAAGCCUACUGAAUGCUGUGUAUAUAUUUAUAUAUAAAUAUAUCUAUUUGAGUGAAACCUUGUGAACUCU2000000009UUAAUUAGAGUUUUCUUGUAUAGUGGCAGAGAUGUCUAUUUCUGCAUUCAAAAGUGUAAUGAUGUACUUAUUCAUGCUAAACUUUUUAUAAAAGUUUAGUUGUAAACUUAACCCUUUUAUACAAAAUAAAUCAAGUGUGUUUAUUGAAUGGUGAUUGCCUGCU2000000009UUAUUUCAGAGGACCAGUGCUUUGAUUUUUAUUAUGCUAUGUUAUAACUGAACCCAAAUAAAUACAAGUUCAAAUUUAUGUAGACUGUAUAAGAUUAUAAUAAAACAUGUCUGAAGUCAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 301 751 1106 1147 1195 1336 1386 1460 1488 1525 1569 1592 1759 1922
Modification Positions m6A m6A Y m6A Y m6A m6A m6A m6A Y m6A m6A Y Y
Genomic Coordinates 2:8679145:+ 2:8682056:+ 2:8682411:+ 2:8682452:+ 2:8682500:+ 2:8683748:+ 2:8683798:+ 2:8683872:+ 2:8683900:+ 2:8683937:+ 2:8683981:+ 2:8684004:+ 2:8684171:+ 2:8684334:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
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msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
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