Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000258405
Gene ID: ENSG00000135919
Gene Name: SERPINE2
Sequence (UNICHARACTER ENCODING) GCGCUGUGGGGCUGCCCGGGCUGCGCGGCGUCUGCAGGCGCCACCGCUGCCUCUUUCCGGCUGUGACCCUCCUCGCCGCCGCCGCUUGGCUGCGUCCUCCGACUCCCCGCGCCGCCGAGACCAGGCUCCCGCUCCGGUUGCGGCCGCACCGCCCUCCGCGGCCGCCCCCUGGGGAUCCAGCGAGCGCGGUCGUCCUUGGUGGAAGGAACCAUGAACUGGCAUCUCCCCCUCUUCCUCUUGGCCUCUGUGACGCUGCCUUCCAUCUGCUCCCACUUCAAUCCUCUGUCUCUCGAGGAACUAGGCUCCAACACGGGGAUCCAGGUUUUCAAUCAGAUUGUGAAGUCGAGGCCUCAUGACAACAUCGUGAUCUCUCCCCAUGGGAUUGCGUCGGUCCUGGGGAUGCUUCAGCUGGGGGCGGACGGCAGGACCAAGAAGCAGCUCGCCAUGGUGAUGAGAUACGGCGUAAAUGGAGUUGGUAAAAUAUUAAAGAAGAUCAACAAGGCCAUCGUCUCCAAGAAGAAUAAAGACAUUGUGACAGUGGCUAACGCCGUGUUUGUUAAGAAUGCCUCUGAAAUUGAAGUGCCUUUUGUUACAAGGAACAAAGAUGUGUUCCAGUGUGAGGUCCGGAAUGUGAACUUUGAGGAUCCAGCCUCUGCCUGUGAUUCCAUCAAUGCAUGGGUUAAAAAUGAAACCAGGGAUAUGAUUGACAAUCUGCUGUCCCCAGAUCUUAUUGAUGGUGUGCUCACCAGACUGGUCCUCGUCAACGCAGUGUAUUUCAAGGGUCUGUGGAAAUCACGGUPCCAACCCGAGAACACAAAGAAACGCACUUUCGUGGCAGCCGACGGGAAAUCCUAUCAAGUGCCAAUGCUGGCCCAGCUCUCCGUGUUCCGGUGUGGGUCGACAAGUGCCCCCAAUGAUUUAUGGUACAACUUCAUUGAACUGCCCUACCACGGGGAAAGCAUCAGCAUGCUGAUUGCACUGCCGACUGAGAGCUCCACUCCGCUGUCUGCCAUCAUCCCACACAUCAGCACCAAGACCAUAGACAGCUGGAUGAGCAUCAUGGUGCCCAAGAGGGUGCAGGUGAUCCUGCCCAAGUUCACAGCUGUAGCACAAACAGAUUUGAAGGAGCCGCUGAAAGUUCUUGGCAUUACUGACAUGUUUGAUUCAUCAAAGGCAAAUUUUGCAAAAAUAACAACAGGGUCAGAAAACCUCCAUGUUUCUCAUAUCUUGCAAAAAGCAAAAAUUGAAGUCAGUGAAGAUGGAACCAAAGCUUCAGCAGCAACAACUGCAAUUCUCAUUGCAAGAUCAUCGCCUCCCUGGUUUAUAGUAGACAGACCUUUUCUGUUUUUCAPCCGACAUAAUCCUACAGGUGCUGUGUUAUUCAUGGGGCAGAUAAACAAACCCUGAAGAGUAUACAAAAGAAACCAUGCAAAGCAACGACUACUUUGCUACGAAGAAAGACUCCUUUCCUGCAUCUUUCAUAGUUCUGUUAAAUAUUUUUGUACAUCGCUUCUUUUUCAAAACUAGUUCUUAGGAACAGACUCGAUGCAAGUGUUUCUGUUCUGGGAGGUAUUGGAGGGAAAAAACAAGCAGGAUGGCUGGAACACUGUACUGAGGAAUGAAUAGAAAGGCUUCCAGAUGUCUAAAAGAUUCUPUAAACUACUGAACUGUUACCUAGGUUAЖCAACCCUGUUGAGUAUUUGCUGUUUGUCCAGUUCAGGAAUUUUUGUUUUGUUUUGUCUAUAUGUGCGGCUUUUCAGAAGAAAUUUAAUCAGUGUGACAGAAAAAAAAAUGUUUUAUGGUAGCUUUUACUUUUUAUGAAAAAAAAAUUAUUUGCCUUUUAAAUUCUUUUCCCCCAUCCCCCUCCAAAGUCUUGAUAGCAAGCGUUAUUUUGGPGGUAGAAACGGUGAAAUCUCUAGCCUCUUUGUGUUUUUGUUGUUGUUGUUGUUGUUGUUUUAUAUAAUGCAUGUAUUCACUAAAAUAAAAUUUAAAAAACUCCUGUCUUGCUAGACAAGGUUGCUGUUGUGCAGUGUGCCUGUCACUACUGGUCUGUACUCCUUGGAUPUGCAUUUUUGUAUUUUGUACAAAGUAAAAAUAAACUGUUAUGAGUAGUAAAAAUAAAGCUAUUUCUCUGCUAUUUGAAAAUACAAUAGAAGAAACUGAGCCUUUUAGACAUUCGUCAGCCUCUUCUAAUAAACCUUUGUACUAUGUAAACAUCAGGAAAUUCAAA
Sequence (SHORT NAMES ENCODING) GCGCUGUGGGGCUGCCCGGGCUGCGCGGCGUCUGCAGGCGCCACCGCUGCCUCUUUCCGGCUGUGACCCUCCUCGCCGCCGCCGCUUGGCUGCGUCCUCCGACUCCCCGCGCCGCCGAGACCAGGCUCCCGCUCCGGUUGCGGCCGCACCGCCCUCCGCGGCCGCCCCCUGGGGAUCCAGCGAGCGCGGUCGUCCUUGGUGGAAGGAACCAUGAACUGGCAUCUCCCCCUCUUCCUCUUGGCCUCUGUGACGCUGCCUUCCAUCUGCUCCCACUUCAAUCCUCUGUCUCUCGAGGAACUAGGCUCCAACACGGGGAUCCAGGUUUUCAAUCAGAUUGUGAAGUCGAGGCCUCAUGACAACAUCGUGAUCUCUCCCCAUGGGAUUGCGUCGGUCCUGGGGAUGCUUCAGCUGGGGGCGGACGGCAGGACCAAGAAGCAGCUCGCCAUGGUGAUGAGAUACGGCGUAAAUGGAGUUGGUAAAAUAUUAAAGAAGAUCAACAAGGCCAUCGUCUCCAAGAAGAAUAAAGACAUUGUGACAGUGGCUAACGCCGUGUUUGUUAAGAAUGCCUCUGAAAUUGAAGUGCCUUUUGUUACAAGGAACAAAGAUGUGUUCCAGUGUGAGGUCCGGAAUGUGAACUUUGAGGAUCCAGCCUCUGCCUGUGAUUCCAUCAAUGCAUGGGUUAAAAAUGAAACCAGGGAUAUGAUUGACAAUCUGCUGUCCCCAGAUCUUAUUGAUGGUGUGCUCACCAGACUGGUCCUCGUCAACGCAGUGUAUUUCAAGGGUCUGUGGAAAUCACGGUYCCAACCCGAGAACACAAAGAAACGCACUUUCGUGGCAGCCGACGGGAAAUCCUAUCAAGUGCCAAUGCUGGCCCAGCUCUCCGUGUUCCGGUGUGGGUCGACAAGUGCCCCCAAUGAUUUAUGGUACAACUUCAUUGAACUGCCCUACCACGGGGAAAGCAUCAGCAUGCUGAUUGCACUGCCGACUGAGAGCUCCACUCCGCUGUCUGCCAUCAUCCCACACAUCAGCACCAAGACCAUAGACAGCUGGAUGAGCAUCAUGGUGCCCAAGAGGGUGCAGGUGAUCCUGCCCAAGUUCACAGCUGUAGCACAAACAGAUUUGAAGGAGCCGCUGAAAGUUCUUGGCAUUACUGACAUGUUUGAUUCAUCAAAGGCAAAUUUUGCAAAAAUAACAACAGGGUCAGAAAACCUCCAUGUUUCUCAUAUCUUGCAAAAAGCAAAAAUUGAAGUCAGUGAAGAUGGAACCAAAGCUUCAGCAGCAACAACUGCAAUUCUCAUUGCAAGAUCAUCGCCUCCCUGGUUUAUAGUAGACAGACCUUUUCUGUUUUUCAYCCGACAUAAUCCUACAGGUGCUGUGUUAUUCAUGGGGCAGAUAAACAAACCCUGAAGAGUAUACAAAAGAAACCAUGCAAAGCAACGACUACUUUGCUACGAAGAAAGACUCCUUUCCUGCAUCUUUCAUAGUUCUGUUAAAUAUUUUUGUACAUCGCUUCUUUUUCAAAACUAGUUCUUAGGAACAGACUCGAUGCAAGUGUUUCUGUUCUGGGAGGUAUUGGAGGGAAAAAACAAGCAGGAUGGCUGGAACACUGUACUGAGGAAUGAAUAGAAAGGCUUCCAGAUGUCUAAAAGAUUCUYUAAACUACUGAACUGUUACCUAGGUUAm6ACAACCCUGUUGAGUAUUUGCUGUUUGUCCAGUUCAGGAAUUUUUGUUUUGUUUUGUCUAUAUGUGCGGCUUUUCAGAAGAAAUUUAAUCAGUGUGACAGAAAAAAAAAUGUUUUAUGGUAGCUUUUACUUUUUAUGAAAAAAAAAUUAUUUGCCUUUUAAAUUCUUUUCCCCCAUCCCCCUCCAAAGUCUUGAUAGCAAGCGUUAUUUUGGYGGUAGAAACGGUGAAAUCUCUAGCCUCUUUGUGUUUUUGUUGUUGUUGUUGUUGUUGUUUUAUAUAAUGCAUGUAUUCACUAAAAUAAAAUUUAAAAAACUCCUGUCUUGCUAGACAAGGUUGCUGUUGUGCAGUGUGCCUGUCACUACUGGUCUGUACUCCUUGGAUYUGCAUUUUUGUAUUUUGUACAAAGUAAAAAUAAACUGUUAUGAGUAGUAAAAAUAAAGCUAUUUCUCUGCUAUUUGAAAAUACAAUAGAAGAAACUGAGCCUUUUAGACAUUCGUCAGCCUCUUCUAAUAAACCUUUGUACUAUGUAAACAUCAGGAAAUUCAAA
Sequence (MODOMICS CODE ENCODING) GCGCUGUGGGGCUGCCCGGGCUGCGCGGCGUCUGCAGGCGCCACCGCUGCCUCUUUCCGGCUGUGACCCUCCUCGCCGCCGCCGCUUGGCUGCGUCCUCCGACUCCCCGCGCCGCCGAGACCAGGCUCCCGCUCCGGUUGCGGCCGCACCGCCCUCCGCGGCCGCCCCCUGGGGAUCCAGCGAGCGCGGUCGUCCUUGGUGGAAGGAACCAUGAACUGGCAUCUCCCCCUCUUCCUCUUGGCCUCUGUGACGCUGCCUUCCAUCUGCUCCCACUUCAAUCCUCUGUCUCUCGAGGAACUAGGCUCCAACACGGGGAUCCAGGUUUUCAAUCAGAUUGUGAAGUCGAGGCCUCAUGACAACAUCGUGAUCUCUCCCCAUGGGAUUGCGUCGGUCCUGGGGAUGCUUCAGCUGGGGGCGGACGGCAGGACCAAGAAGCAGCUCGCCAUGGUGAUGAGAUACGGCGUAAAUGGAGUUGGUAAAAUAUUAAAGAAGAUCAACAAGGCCAUCGUCUCCAAGAAGAAUAAAGACAUUGUGACAGUGGCUAACGCCGUGUUUGUUAAGAAUGCCUCUGAAAUUGAAGUGCCUUUUGUUACAAGGAACAAAGAUGUGUUCCAGUGUGAGGUCCGGAAUGUGAACUUUGAGGAUCCAGCCUCUGCCUGUGAUUCCAUCAAUGCAUGGGUUAAAAAUGAAACCAGGGAUAUGAUUGACAAUCUGCUGUCCCCAGAUCUUAUUGAUGGUGUGCUCACCAGACUGGUCCUCGUCAACGCAGUGUAUUUCAAGGGUCUGUGGAAAUCACGGU2000000009UCCAACCCGAGAACACAAAGAAACGCACUUUCGUGGCAGCCGACGGGAAAUCCUAUCAAGUGCCAAUGCUGGCCCAGCUCUCCGUGUUCCGGUGUGGGUCGACAAGUGCCCCCAAUGAUUUAUGGUACAACUUCAUUGAACUGCCCUACCACGGGGAAAGCAUCAGCAUGCUGAUUGCACUGCCGACUGAGAGCUCCACUCCGCUGUCUGCCAUCAUCCCACACAUCAGCACCAAGACCAUAGACAGCUGGAUGAGCAUCAUGGUGCCCAAGAGGGUGCAGGUGAUCCUGCCCAAGUUCACAGCUGUAGCACAAACAGAUUUGAAGGAGCCGCUGAAAGUUCUUGGCAUUACUGACAUGUUUGAUUCAUCAAAGGCAAAUUUUGCAAAAAUAACAACAGGGUCAGAAAACCUCCAUGUUUCUCAUAUCUUGCAAAAAGCAAAAAUUGAAGUCAGUGAAGAUGGAACCAAAGCUUCAGCAGCAACAACUGCAAUUCUCAUUGCAAGAUCAUCGCCUCCCUGGUUUAUAGUAGACAGACCUUUUCUGUUUUUCA2000000009UCCGACAUAAUCCUACAGGUGCUGUGUUAUUCAUGGGGCAGAUAAACAAACCCUGAAGAGUAUACAAAAGAAACCAUGCAAAGCAACGACUACUUUGCUACGAAGAAAGACUCCUUUCCUGCAUCUUUCAUAGUUCUGUUAAAUAUUUUUGUACAUCGCUUCUUUUUCAAAACUAGUUCUUAGGAACAGACUCGAUGCAAGUGUUUCUGUUCUGGGAGGUAUUGGAGGGAAAAAACAAGCAGGAUGGCUGGAACACUGUACUGAGGAAUGAAUAGAAAGGCUUCCAGAUGUCUAAAAGAUUCU2000000009UUAAACUACUGAACUGUUACCUAGGUUA2000000006ACAACCCUGUUGAGUAUUUGCUGUUUGUCCAGUUCAGGAAUUUUUGUUUUGUUUUGUCUAUAUGUGCGGCUUUUCAGAAGAAAUUUAAUCAGUGUGACAGAAAAAAAAAUGUUUUAUGGUAGCUUUUACUUUUUAUGAAAAAAAAAUUAUUUGCCUUUUAAAUUCUUUUCCCCCAUCCCCCUCCAAAGUCUUGAUAGCAAGCGUUAUUUUGG2000000009UGGUAGAAACGGUGAAAUCUCUAGCCUCUUUGUGUUUUUGUUGUUGUUGUUGUUGUUGUUUUAUAUAAUGCAUGUAUUCACUAAAAUAAAAUUUAAAAAACUCCUGUCUUGCUAGACAAGGUUGCUGUUGUGCAGUGUGCCUGUCACUACUGGUCUGUACUCCUUGGAU2000000009UUGCAUUUUUGUAUUUUGUACAAAGUAAAAAUAAACUGUUAUGAGUAGUAAAAAUAAAGCUAUUUCUCUGCUAUUUGAAAAUACAAUAGAAGAAACUGAGCCUUUUAGACAUUCGUCAGCCUCUUCUAAUAAACCUUUGUACUAUGUAAACAUCAGGAAAUUCAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 800 1352 1655 1683 1895 2064
Modification Positions Y Y Y m6A Y Y
Genomic Coordinates 2:223991898:- 2:223977561:- 2:223975619:- 2:223975591:- 2:223975379:- 2:223975210:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs aEoRHyGnepSt
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BtsJQJ3DteUq
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BtsJQJ3DteUq
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dknfVe6BK8aP
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kx7BHU7ZycYE
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
kx7BHU7ZycYE
iezFbUdmY3A6
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Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
kx7BHU7ZycYE
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
kx7BHU7ZycYE
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
XWZVGdLC6gGJ
iezFbUdmY3A6
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