Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000565283
Gene ID: ENSG00000260025
Gene Name: CRIM1-DT
Sequence (UNICHARACTER ENCODING) GCGGAUGGGCUUGGGGCGCACCCAGCGAGCAGCGAGAGUCGCGGUGUCCCGGGCGCUCGCUGGCACCGUGGCCGCAGCGGCCGGCCUGGGAGCCAGGAGGGCGAGGCGGCUGCACCUUCGGGGCCAGAUUGGAGUUCGAAGAGUGGCGGGUACCCCAGAAGCUCGGGGCCGGGGCGAUGGCUGCAGCCUCGGGAGGGUAUCGCCGGAUCGAACUCCGGGAAAGGGAAGCAAAGGCAUGGAЖCCUCCGCACACUGGAUGAGAAUCCAUCUUCCAUUCGAGCUGGGAAUAGЖCUUUGUGAAAGAUAUUAUGUAAUGGAGUCUCGGGAACCCUGAGACCUCUCCAGCGAAGCUGAAGUGAAUUAAUUAAGUGCUPUAAACGGUCUUGGUAAAUAUUCCGCGGGAGCUGGGGAGGACCGUUGGGAUGGCUGUAGCUUGAGUUGAAUUUUAACUGUCCUCAUUCUGGGUUUUGUCGCUCUGCUUUCUGUGCCAAGGUGCUGUGUUACGGGAGAGAGUGACUGGAAAGUAACAAAGCUGAAUCUUUCUCCCUGGAGUAAGGCCGAAGACUGGAUUACUACACGCCUAGACGUGACACUACACCCAUAGAUCUCAUGCAUCAUUAAUGCCAUAUGACAUUGCCAUUUUCUUUCUCAGUUCACGGЖCAAAAGUGGUGGGUUUUCAUUGUCUUCACUGAUUGUCAAUGCAUUAAUAAAGAAGAUGUGUGGUACAUAG
Sequence (SHORT NAMES ENCODING) GCGGAUGGGCUUGGGGCGCACCCAGCGAGCAGCGAGAGUCGCGGUGUCCCGGGCGCUCGCUGGCACCGUGGCCGCAGCGGCCGGCCUGGGAGCCAGGAGGGCGAGGCGGCUGCACCUUCGGGGCCAGAUUGGAGUUCGAAGAGUGGCGGGUACCCCAGAAGCUCGGGGCCGGGGCGAUGGCUGCAGCCUCGGGAGGGUAUCGCCGGAUCGAACUCCGGGAAAGGGAAGCAAAGGCAUGGAm6ACCUCCGCACACUGGAUGAGAAUCCAUCUUCCAUUCGAGCUGGGAAUAGm6ACUUUGUGAAAGAUAUUAUGUAAUGGAGUCUCGGGAACCCUGAGACCUCUCCAGCGAAGCUGAAGUGAAUUAAUUAAGUGCUYUAAACGGUCUUGGUAAAUAUUCCGCGGGAGCUGGGGAGGACCGUUGGGAUGGCUGUAGCUUGAGUUGAAUUUUAACUGUCCUCAUUCUGGGUUUUGUCGCUCUGCUUUCUGUGCCAAGGUGCUGUGUUACGGGAGAGAGUGACUGGAAAGUAACAAAGCUGAAUCUUUCUCCCUGGAGUAAGGCCGAAGACUGGAUUACUACACGCCUAGACGUGACACUACACCCAUAGAUCUCAUGCAUCAUUAAUGCCAUAUGACAUUGCCAUUUUCUUUCUCAGUUCACGGm6ACAAAAGUGGUGGGUUUUCAUUGUCUUCACUGAUUGUCAAUGCAUUAAUAAAGAAGAUGUGUGGUACAUAG
Sequence (MODOMICS CODE ENCODING) GCGGAUGGGCUUGGGGCGCACCCAGCGAGCAGCGAGAGUCGCGGUGUCCCGGGCGCUCGCUGGCACCGUGGCCGCAGCGGCCGGCCUGGGAGCCAGGAGGGCGAGGCGGCUGCACCUUCGGGGCCAGAUUGGAGUUCGAAGAGUGGCGGGUACCCCAGAAGCUCGGGGCCGGGGCGAUGGCUGCAGCCUCGGGAGGGUAUCGCCGGAUCGAACUCCGGGAAAGGGAAGCAAAGGCAUGGA2000000006ACCUCCGCACACUGGAUGAGAAUCCAUCUUCCAUUCGAGCUGGGAAUAG2000000006ACUUUGUGAAAGAUAUUAUGUAAUGGAGUCUCGGGAACCCUGAGACCUCUCCAGCGAAGCUGAAGUGAAUUAAUUAAGUGCU2000000009UUAAACGGUCUUGGUAAAUAUUCCGCGGGAGCUGGGGAGGACCGUUGGGAUGGCUGUAGCUUGAGUUGAAUUUUAACUGUCCUCAUUCUGGGUUUUGUCGCUCUGCUUUCUGUGCCAAGGUGCUGUGUUACGGGAGAGAGUGACUGGAAAGUAACAAAGCUGAAUCUUUCUCCCUGGAGUAAGGCCGAAGACUGGAUUACUACACGCCUAGACGUGACACUACACCCAUAGAUCUCAUGCAUCAUUAAUGCCAUAUGACAUUGCCAUUUUCUUUCUCAGUUCACGG2000000006ACAAAAGUGGUGGGUUUUCAUUGUCUUCACUGAUUGUCAAUGCAUUAAUAAAGAAGAUGUGUGGUACAUAG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 241 290 372 658
Modification Positions m6A m6A Y m6A
Genomic Coordinates 2:36355231:- 2:36355182:- 2:36355100:- 2:36354814:-
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
dknfVe6BK8aP
5FhTyQVy2tKW
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
bXBqJigD9oV3
dknfVe6BK8aP
bXBqJigD9oV3
dknfVe6BK8aP
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP