General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000475989
Gene ID:	ENSG00000144355
Gene Name:	DLX1
Sequence (UNICHARACTER ENCODING)	GCGGCUCGGUGUGCAGAGCACACAAUGCCCCGCUGGAAAACAGAAACCCACAUGUGCACGUAUUAGUCUCGGUAAUUAUUUAUUGCGUAGCGCUAUAAACAAUGUAUGCAAUUAAGGGUAAUUAAACCUCAACUACCGCCUGCAAAAAUAGCAAACUUUCCCUGCAAAGGCAGGAGCUGAGCUCCUGGGAACGGCUCUAUCCCUCCUGCAGCGUCCCGGGACAGGCCCUCGGAUUUUGGGGGACCCUUCCCUGGCUUUCAGAGUUUCUUGAACGUUCUCUCCCUGGUGCUGCCUCCGCCACCCUUCGGUAGCCACUCGCUCUCGGCUGUUCGCACUAAAGGCGGCCCCUCGUAUUAACAACGGGCCCUACUUCUGCUGUCCCUCCAGGGGCGGACUCGGAGAAGAGCACGGUGGUGGAAGGCGGUGAAGUGCGCUUCAAUGGCAAGGGAAAAAAGAUCCGUAAACCCAGGACGAUUUAUUCCAGUUUGCAGUUGCAGGCUUUGAACCGGAGGUUCCAGCAAACUCAGUACCUAGCUCUGCCGGAGAGGGCGGAGCUCGCGGCCUCUUUGGGЖCUCACACAGACUCAGGUCAAGAUCUGGUUCCAAAACAAGCGAUCCAAGUUCAAGAAGCUGAUGAAGCAGGGUGGGGCGGCUCUGGAGGGUAGUGCGUUGGCCAACGGUCGGGCCCUGUCUGCUGGCUCCCCACCCGUGCCGCCCGGCUGGAACCCUAACUCUUCAUCCGGGAAGGGCUCAGGAGGAAACGCGGGCUCCUAUAUCCCCAGCUACACAUCGUGGUACCCUUCAGCGCACCAAGAAGCUAUGCAGCAACCCCAACUUAUGUGAGGUUGCCCGCCCGUCUCCUUCUUGUCUCCCCGGCCCAGGUCCCUCCCGCCUCCAGGUCCAUCCAUCCCGUCCGGAAAAGAAGGACCCAGAGGGAAGAAGGAACAGUGGAGGCGGGACGCCCUCCAUCUCCUCGGAGCCCCGCGAGGUCCGGCCCAGCAACUUCCCGGCAUCCGCGCUCUAGCCUGAACCCUGGCCUGGGCCGAGCAGUGGCAGCAGAGAGUGGCCUCGGAGGGAAGCCACUGCCACCUGAGACAGCCCAAGCAGCAAGAUAAACCCGCUCCACCCGACCCGCCGACCUUCAGCUUUGUGGGЖCUAUCAGGAAAAAACAAAACAAAAACAAAAUGUAGAAAAAGCAAAAGCUCUUUUCUGUCCUGUCAGUCUCCUGUCUCCUUUUGCUCUGUCUGUGCGCUGGUAAAGUCCAGGUCCUCAPCCGUCCGCUGUCCUCAUUCUGCGGCCUCAGCAAAAAGCCACAAGGUCUGAGCGGCCCGGGUCCUGCCGGGCUGACCAUCUCCGGAUCCUGGGЖCACUCUGCCUGACCAUCUGUGUAGCUGGUGUGGGAAUCUGGGGGCAUUGGAGGGAGGGGGUUUUAUUUAUUGAGAAAUGGЖCUUCGCCUGAGGCUGUUUGCCAAUUCAGGGUUCUGCUGGGCGCAAGGAACGCЖCUGUUCAAACGCЖCUGUUUACUPUAAGCGCACGGGGAGAAACGAAUAAGGAGGACGUGGUGAUUUUUAAUUUAUACAGUAЖCUUUUGUACUUCUCUGGUAUGGAGAGUUUGGAGCCGAAUGAUUUGCAUUUUUUACAUGUCCGACAUUAUUUAAUAAAUAAUUUUUAAAAGAAAAGAACGAUAAAUGAAGCCAACAUGAUUUUCUCAUUUCGGGAGGAЖCUCUGUUGCUUCGCCUGGACAAGAAGGAAAAUGCUGAUUUCCUCCUUGGGUAGAAAGAGGGAGCGAGGGCAAAUGGGGAGUAGAGAGAAAACAGGCGAGAACAAGCACUCUAAUUCCAGUGGGCUPUAAAAUAAGACAAAAUCAGCUPUACAACAAUCCCUAGAGGCUCGACCACAGAA
Sequence (SHORT NAMES ENCODING)	GCGGCUCGGUGUGCAGAGCACACAAUGCCCCGCUGGAAAACAGAAACCCACAUGUGCACGUAUUAGUCUCGGUAAUUAUUUAUUGCGUAGCGCUAUAAACAAUGUAUGCAAUUAAGGGUAAUUAAACCUCAACUACCGCCUGCAAAAAUAGCAAACUUUCCCUGCAAAGGCAGGAGCUGAGCUCCUGGGAACGGCUCUAUCCCUCCUGCAGCGUCCCGGGACAGGCCCUCGGAUUUUGGGGGACCCUUCCCUGGCUUUCAGAGUUUCUUGAACGUUCUCUCCCUGGUGCUGCCUCCGCCACCCUUCGGUAGCCACUCGCUCUCGGCUGUUCGCACUAAAGGCGGCCCCUCGUAUUAACAACGGGCCCUACUUCUGCUGUCCCUCCAGGGGCGGACUCGGAGAAGAGCACGGUGGUGGAAGGCGGUGAAGUGCGCUUCAAUGGCAAGGGAAAAAAGAUCCGUAAACCCAGGACGAUUUAUUCCAGUUUGCAGUUGCAGGCUUUGAACCGGAGGUUCCAGCAAACUCAGUACCUAGCUCUGCCGGAGAGGGCGGAGCUCGCGGCCUCUUUGGGm6ACUCACACAGACUCAGGUCAAGAUCUGGUUCCAAAACAAGCGAUCCAAGUUCAAGAAGCUGAUGAAGCAGGGUGGGGCGGCUCUGGAGGGUAGUGCGUUGGCCAACGGUCGGGCCCUGUCUGCUGGCUCCCCACCCGUGCCGCCCGGCUGGAACCCUAACUCUUCAUCCGGGAAGGGCUCAGGAGGAAACGCGGGCUCCUAUAUCCCCAGCUACACAUCGUGGUACCCUUCAGCGCACCAAGAAGCUAUGCAGCAACCCCAACUUAUGUGAGGUUGCCCGCCCGUCUCCUUCUUGUCUCCCCGGCCCAGGUCCCUCCCGCCUCCAGGUCCAUCCAUCCCGUCCGGAAAAGAAGGACCCAGAGGGAAGAAGGAACAGUGGAGGCGGGACGCCCUCCAUCUCCUCGGAGCCCCGCGAGGUCCGGCCCAGCAACUUCCCGGCAUCCGCGCUCUAGCCUGAACCCUGGCCUGGGCCGAGCAGUGGCAGCAGAGAGUGGCCUCGGAGGGAAGCCACUGCCACCUGAGACAGCCCAAGCAGCAAGAUAAACCCGCUCCACCCGACCCGCCGACCUUCAGCUUUGUGGGm6ACUAUCAGGAAAAAACAAAACAAAAACAAAAUGUAGAAAAAGCAAAAGCUCUUUUCUGUCCUGUCAGUCUCCUGUCUCCUUUUGCUCUGUCUGUGCGCUGGUAAAGUCCAGGUCCUCAYCCGUCCGCUGUCCUCAUUCUGCGGCCUCAGCAAAAAGCCACAAGGUCUGAGCGGCCCGGGUCCUGCCGGGCUGACCAUCUCCGGAUCCUGGGm6ACACUCUGCCUGACCAUCUGUGUAGCUGGUGUGGGAAUCUGGGGGCAUUGGAGGGAGGGGGUUUUAUUUAUUGAGAAAUGGm6ACUUCGCCUGAGGCUGUUUGCCAAUUCAGGGUUCUGCUGGGCGCAAGGAACGCm6ACUGUUCAAACGCm6ACUGUUUACUYUAAGCGCACGGGGAGAAACGAAUAAGGAGGACGUGGUGAUUUUUAAUUUAUACAGUAm6ACUUUUGUACUUCUCUGGUAUGGAGAGUUUGGAGCCGAAUGAUUUGCAUUUUUUACAUGUCCGACAUUAUUUAAUAAAUAAUUUUUAAAAGAAAAGAACGAUAAAUGAAGCCAACAUGAUUUUCUCAUUUCGGGAGGAm6ACUCUGUUGCUUCGCCUGGACAAGAAGGAAAAUGCUGAUUUCCUCCUUGGGUAGAAAGAGGGAGCGAGGGCAAAUGGGGAGUAGAGAGAAAACAGGCGAGAACAAGCACUCUAAUUCCAGUGGGCUYUAAAAUAAGACAAAAUCAGCUYUACAACAAUCCCUAGAGGCUCGACCACAGAA
Sequence (MODOMICS CODE ENCODING)	GCGGCUCGGUGUGCAGAGCACACAAUGCCCCGCUGGAAAACAGAAACCCACAUGUGCACGUAUUAGUCUCGGUAAUUAUUUAUUGCGUAGCGCUAUAAACAAUGUAUGCAAUUAAGGGUAAUUAAACCUCAACUACCGCCUGCAAAAAUAGCAAACUUUCCCUGCAAAGGCAGGAGCUGAGCUCCUGGGAACGGCUCUAUCCCUCCUGCAGCGUCCCGGGACAGGCCCUCGGAUUUUGGGGGACCCUUCCCUGGCUUUCAGAGUUUCUUGAACGUUCUCUCCCUGGUGCUGCCUCCGCCACCCUUCGGUAGCCACUCGCUCUCGGCUGUUCGCACUAAAGGCGGCCCCUCGUAUUAACAACGGGCCCUACUUCUGCUGUCCCUCCAGGGGCGGACUCGGAGAAGAGCACGGUGGUGGAAGGCGGUGAAGUGCGCUUCAAUGGCAAGGGAAAAAAGAUCCGUAAACCCAGGACGAUUUAUUCCAGUUUGCAGUUGCAGGCUUUGAACCGGAGGUUCCAGCAAACUCAGUACCUAGCUCUGCCGGAGAGGGCGGAGCUCGCGGCCUCUUUGGG2000000006ACUCACACAGACUCAGGUCAAGAUCUGGUUCCAAAACAAGCGAUCCAAGUUCAAGAAGCUGAUGAAGCAGGGUGGGGCGGCUCUGGAGGGUAGUGCGUUGGCCAACGGUCGGGCCCUGUCUGCUGGCUCCCCACCCGUGCCGCCCGGCUGGAACCCUAACUCUUCAUCCGGGAAGGGCUCAGGAGGAAACGCGGGCUCCUAUAUCCCCAGCUACACAUCGUGGUACCCUUCAGCGCACCAAGAAGCUAUGCAGCAACCCCAACUUAUGUGAGGUUGCCCGCCCGUCUCCUUCUUGUCUCCCCGGCCCAGGUCCCUCCCGCCUCCAGGUCCAUCCAUCCCGUCCGGAAAAGAAGGACCCAGAGGGAAGAAGGAACAGUGGAGGCGGGACGCCCUCCAUCUCCUCGGAGCCCCGCGAGGUCCGGCCCAGCAACUUCCCGGCAUCCGCGCUCUAGCCUGAACCCUGGCCUGGGCCGAGCAGUGGCAGCAGAGAGUGGCCUCGGAGGGAAGCCACUGCCACCUGAGACAGCCCAAGCAGCAAGAUAAACCCGCUCCACCCGACCCGCCGACCUUCAGCUUUGUGGG2000000006ACUAUCAGGAAAAAACAAAACAAAAACAAAAUGUAGAAAAAGCAAAAGCUCUUUUCUGUCCUGUCAGUCUCCUGUCUCCUUUUGCUCUGUCUGUGCGCUGGUAAAGUCCAGGUCCUCA2000000009UCCGUCCGCUGUCCUCAUUCUGCGGCCUCAGCAAAAAGCCACAAGGUCUGAGCGGCCCGGGUCCUGCCGGGCUGACCAUCUCCGGAUCCUGGG2000000006ACACUCUGCCUGACCAUCUGUGUAGCUGGUGUGGGAAUCUGGGGGCAUUGGAGGGAGGGGGUUUUAUUUAUUGAGAAAUGG2000000006ACUUCGCCUGAGGCUGUUUGCCAAUUCAGGGUUCUGCUGGGCGCAAGGAACGC2000000006ACUGUUCAAACGC2000000006ACUGUUUACU2000000009UUAAGCGCACGGGGAGAAACGAAUAAGGAGGACGUGGUGAUUUUUAAUUUAUACAGUA2000000006ACUUUUGUACUUCUCUGGUAUGGAGAGUUUGGAGCCGAAUGAUUUGCAUUUUUUACAUGUCCGACAUUAUUUAAUAAAUAAUUUUUAAAAGAAAAGAACGAUAAAUGAAGCCAACAUGAUUUUCUCAUUUCGGGAGGA2000000006ACUCUGUUGCUUCGCCUGGACAAGAAGGAAAAUGCUGAUUUCCUCCUUGGGUAGAAAGAGGGAGCGAGGGCAAAUGGGGAGUAGAGAGAAAACAGGCGAGAACAAGCACUCUAAUUCCAGUGGGCU2000000009UUAAAAUAAGACAAAAUCAGCU2000000009UUACAACAAUCCCUAGAGGCUCGACCACAGAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	572	1154	1272	1365	1446	1499	1512	1522	1580	1718	1844	1866
Modification Positions	m6A	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y	Y
Genomic Coordinates	2:172086838:+	2:172088569:+	2:172088687:+	2:172088780:+	2:172088861:+	2:172088914:+	2:172088927:+	2:172088937:+	2:172088995:+	2:172089133:+	2:172089259:+	2:172089281:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8