Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000467292
Gene ID: ENSG00000291176
Gene Name: None
Sequence (UNICHARACTER ENCODING) GCUAGGGGUGGUUGCCUGUGACGUCACCGGACGCGCCCGCUUCUCGCUGGAGUGCGCACCGAGCGGCAGUGACUUCGCCGCUGCUGUAGUUCCCCGGCUGGAUGCGGUGACUGGUGCCAGUGCUCAGGCGCCCGCUGCCCUUGACCUCCCGCCCCGCGAGCCCUAACUCAGCGCAGGAGGACCGGCUGCCGCCGCCGCCGCCGCCAGAUCCACACAACUUAAAGAUCUGCUGUCGAGUGAAUGGGGAAGUGGUCCAGAGCAGCAACACCAACCAGAUGGUAUUCAAGACAGAGGACCUGAUAGCCUGGGUGUCCCAGUUUGUUACCUUUUACCCAGGGGAUGUCAUCCUGACUGGGACCCCCCCACCUCCACCCAGGUGUCGGUGUAUUCAGGAAACCUCCUGUCUUUCUCAAGGUCUCUGAAGGUCCAGACAGCACUGAUGGCGAGCUUUGGGUCCGCACACUCUGGAAAGAAGAGAGAAGUGAAGGCUCUAGGUAGGGAGAACAGAGAGCCACUGGGCACAGGCUUCUCUCCUCUUGUUUAAAGAAGCCCAGGGAGGGAUAGAGCUCUGACUGGЖCAGAAGЖCUGUACUCUGCAGCCUGCCUUCCUAGAGUUGGGUUGUCACUGUCCUGCAGGGGGCAGCAGCCACCAGCAAACACCACUGCCUGCAGGAGCCUGGGCUGACUGGUUGGGЖCUCACCGAAGAUCCCUUCUUCCUGGGCGGUGGCCUGCAGGAЖCUGGAACAGCUGCUCUGUGUAGCCCAACUCUGCAGAAGAGAGAAGACCUAGACCUGGCACCCAGCACAGACACAGCCUGCCUCGAGGЖCUGCAAGGGAACAAGGGCCUCACCAGUAUCGGGCAGCUGGCCCUGGCGGAGGAAGGCGGCAGCCUGUGCAAAGGCCUUGAGCAGCGGGCUGAGCAGGCGGCAGAGGAAAAGAAAGAAAUCUGGGCAGUGUGЖCUGCUGGCUGAGCUGGAGGGGACAGGCCGGGGUGAGUGCAGCUCCCCACCGCCUCCCUACCACCPCCCUCCAGGGGCAGCUUUUUGAAACACACCCUGAAGUACCGGCCGUCAGCCUCUCCGAAGUCAUCACUGUCACUAUCAGUAAAGUCCCCACUCGGUUUCCACAGCAGCUUUCUGCUCAA
Sequence (SHORT NAMES ENCODING) GCUAGGGGUGGUUGCCUGUGACGUCACCGGACGCGCCCGCUUCUCGCUGGAGUGCGCACCGAGCGGCAGUGACUUCGCCGCUGCUGUAGUUCCCCGGCUGGAUGCGGUGACUGGUGCCAGUGCUCAGGCGCCCGCUGCCCUUGACCUCCCGCCCCGCGAGCCCUAACUCAGCGCAGGAGGACCGGCUGCCGCCGCCGCCGCCGCCAGAUCCACACAACUUAAAGAUCUGCUGUCGAGUGAAUGGGGAAGUGGUCCAGAGCAGCAACACCAACCAGAUGGUAUUCAAGACAGAGGACCUGAUAGCCUGGGUGUCCCAGUUUGUUACCUUUUACCCAGGGGAUGUCAUCCUGACUGGGACCCCCCCACCUCCACCCAGGUGUCGGUGUAUUCAGGAAACCUCCUGUCUUUCUCAAGGUCUCUGAAGGUCCAGACAGCACUGAUGGCGAGCUUUGGGUCCGCACACUCUGGAAAGAAGAGAGAAGUGAAGGCUCUAGGUAGGGAGAACAGAGAGCCACUGGGCACAGGCUUCUCUCCUCUUGUUUAAAGAAGCCCAGGGAGGGAUAGAGCUCUGACUGGm6ACAGAAGm6ACUGUACUCUGCAGCCUGCCUUCCUAGAGUUGGGUUGUCACUGUCCUGCAGGGGGCAGCAGCCACCAGCAAACACCACUGCCUGCAGGAGCCUGGGCUGACUGGUUGGGm6ACUCACCGAAGAUCCCUUCUUCCUGGGCGGUGGCCUGCAGGAm6ACUGGAACAGCUGCUCUGUGUAGCCCAACUCUGCAGAAGAGAGAAGACCUAGACCUGGCACCCAGCACAGACACAGCCUGCCUCGAGGm6ACUGCAAGGGAACAAGGGCCUCACCAGUAUCGGGCAGCUGGCCCUGGCGGAGGAAGGCGGCAGCCUGUGCAAAGGCCUUGAGCAGCGGGCUGAGCAGGCGGCAGAGGAAAAGAAAGAAAUCUGGGCAGUGUGm6ACUGCUGGCUGAGCUGGAGGGGACAGGCCGGGGUGAGUGCAGCUCCCCACCGCCUCCCUACCACCYCCCUCCAGGGGCAGCUUUUUGAAACACACCCUGAAGUACCGGCCGUCAGCCUCUCCGAAGUCAUCACUGUCACUAUCAGUAAAGUCCCCACUCGGUUUCCACAGCAGCUUUCUGCUCAA
Sequence (MODOMICS CODE ENCODING) GCUAGGGGUGGUUGCCUGUGACGUCACCGGACGCGCCCGCUUCUCGCUGGAGUGCGCACCGAGCGGCAGUGACUUCGCCGCUGCUGUAGUUCCCCGGCUGGAUGCGGUGACUGGUGCCAGUGCUCAGGCGCCCGCUGCCCUUGACCUCCCGCCCCGCGAGCCCUAACUCAGCGCAGGAGGACCGGCUGCCGCCGCCGCCGCCGCCAGAUCCACACAACUUAAAGAUCUGCUGUCGAGUGAAUGGGGAAGUGGUCCAGAGCAGCAACACCAACCAGAUGGUAUUCAAGACAGAGGACCUGAUAGCCUGGGUGUCCCAGUUUGUUACCUUUUACCCAGGGGAUGUCAUCCUGACUGGGACCCCCCCACCUCCACCCAGGUGUCGGUGUAUUCAGGAAACCUCCUGUCUUUCUCAAGGUCUCUGAAGGUCCAGACAGCACUGAUGGCGAGCUUUGGGUCCGCACACUCUGGAAAGAAGAGAGAAGUGAAGGCUCUAGGUAGGGAGAACAGAGAGCCACUGGGCACAGGCUUCUCUCCUCUUGUUUAAAGAAGCCCAGGGAGGGAUAGAGCUCUGACUGG2000000006ACAGAAG2000000006ACUGUACUCUGCAGCCUGCCUUCCUAGAGUUGGGUUGUCACUGUCCUGCAGGGGGCAGCAGCCACCAGCAAACACCACUGCCUGCAGGAGCCUGGGCUGACUGGUUGGG2000000006ACUCACCGAAGAUCCCUUCUUCCUGGGCGGUGGCCUGCAGGA2000000006ACUGGAACAGCUGCUCUGUGUAGCCCAACUCUGCAGAAGAGAGAAGACCUAGACCUGGCACCCAGCACAGACACAGCCUGCCUCGAGG2000000006ACUGCAAGGGAACAAGGGCCUCACCAGUAUCGGGCAGCUGGCCCUGGCGGAGGAAGGCGGCAGCCUGUGCAAAGGCCUUGAGCAGCGGGCUGAGCAGGCGGCAGAGGAAAAGAAAGAAAUCUGGGCAGUGUG2000000006ACUGCUGGCUGAGCUGGAGGGGACAGGCCGGGGUGAGUGCAGCUCCCCACCGCCUCCCUACCACC2000000009UCCCUCCAGGGGCAGCUUUUUGAAACACACCCUGAAGUACCGGCCGUCAGCCUCUCCGAAGUCAUCACUGUCACUAUCAGUAAAGUCCCCACUCGGUUUCCACAGCAGCUUUCUGCUCAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 577 584 693 735 823 955 1020
Modification Positions m6A m6A m6A m6A m6A m6A Y
Genomic Coordinates 2:96022836:+ 2:96022843:+ 2:96022952:+ 2:96022994:+ 2:96023082:+ 2:96023214:+ 2:96023279:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
msuJfBpJvM5H
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
gBgcfFQ5WN9C
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8