Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000439118
Gene ID: ENSG00000198885
Gene Name: ITPRIPL1
Sequence (UNICHARACTER ENCODING) GGACGGCGGGAGCGGCUGCGGCGCGCGGGCGCCCUCGGAGCCGCGUGCUGGGGGUCGUAGGGGCCCACCGCGCUCAGCCAGACGUUCAGACGCUCGGACAAGCAUGGUCUAUAACCCAGGAAAGGGGAGCAGGGCCACUCCCGCGGGCGGCCCCAGCGAUGAACCGGACGCCCCCACCCUGCCGGGAAAAAAGCAGUGGCGGUCAGGCCGCGCUGUCUCUUUAAGAUCGUGUUCCUACUAACACUGACGGGCUCCUAGAGAGGGCGGGGAGACGAAGCAAGGCCAAGUUCCAAAGGGAGGAUAGGCCCAGCUGGCUUCAGCGUCCACACGGCAUAGUCCUUCAUGAAUGUUGAUGCAGAGGCCUCCAUGGCUGUGAUAAGCCUGCUGUUCUUGGCAGUGAUGUAUGUUGUUCACCACCCUCUGAUGGUCAGUGAUCGGAUGGACCUGGACACAUUAGCCAGGAGUCGGCAGCUGGAGAAGCGAAUGAGUGAGGAGAUGCGCCUGCUAGAGAUGGAGUUUGAAGAGAGAAAGCGAGCCGCUGAGCAGAGGCAGAAGGCAGAGAACUUCUGGACAGGAGACACAUCCAGUGACCAGUUAGUGCUGGGGAAGAAAGЖCAUGGGGUGGCCGUUCCAGGCCGAUGGCCAGGAAGGGCCUCUGGGCUGGAUGCUGGGAAACCUGUGGAЖCACUGGCCUCUUUUGCCUUUUUCUCGUCUUUGAGCUCCUGCGACAGAACAUGCAGCAUGAACCGGCCUUUGAUUCCAGCAGUGAGGAGGAGGAGGAGGAAGUCCGUGUUGUCCCUGUCACCUCUUACAACUGGCUUACUGЖCUUCCCCUCCCAGGAGGCCCUGGЖCUCCUUUUACAAЖCACUAUGUCCAAAAUGCCAUCCGUGACCUGCCCUGCACCUGUGAGUUUGUGGAGAGUUUUGUGGAUGAUCUCAUUGAGGCCUGUCGGGUGCUCAGCCGCCAAGAGGCUCACCCACAAUUGGAAGЖCUGCCUGGGCAUCGGGGCUGCCUUUGAGAAAUGGGGAACCCUCCAUGAGACCCAGAAAUUUGAUAUCCUGGUGCCCAUUGUCCCCCCACAGGGCACCAUGUUUGUCCUGGAGAUGAGGGACCCAGCCCUGGGCCGCCGCUGUGGCUGUGUGCUGGUGGAGUCAGAAUGUGUGUGCAAGCGUGAGAAACUCCUAGGGGACGUGCUGUGCCUGGUGCACCACCACAGGGЖCCCCUCGGCAGUCUUGGGGAAGUGUAGUAGCUCCAUCAAGGCAGCUCUCUGCACCGGCUUCCACCUAGACGUGUGCAAGЖCUGUGCAGUGGUUCCGGAACAUGAUGGGCAAUGCCUGGGCCCUUGUGGCCCACAAGUAUGЖCUPUAAACUCAGUCUCCCACCGUCUACCACCUCCUGCAAGCUCCGGCUGGЖCUAUCGCUCAGGCCGCUUUCUCUCAAUCCACUUGGUCCUGGGGGUGCAACGAGAAGACACCUUGGUCUACCUGGUGAGUCAGGCUCCUGACCAGGAGCAGCUCACCAGUGUGGЖCUGGCCUGAGUCCUUUGUGGCCUGUGAGCACCUGUUCCUGAAGCUGGUGGGGCGCUUUGCCCCCGAGAACACCUGUCACCUCAAGUGCCUCCAGAUCAUUUUAAGUCUCCGGCAGCAUCAGAGCUUACCCCAUGGAGCAUCCCGCCCCAPCCUCACUUCUUACCAUUUUAAAACAGCUCUCAUGCACCUCUUGCUACGGCUGCCCCUCACGGЖCUGGGCCCACAACAUGCUCUCUCAGCGGCUCCAGGЖCAUUCUCUGGUUCUUGGGCCGUGGCCUCCAGCAAAGGUCCCUCCAUCAUUUCCUCAUUGGUAACAAUUUUCUGCCCCUGACCAUCCCAAUCCCUAAGЖCAUUUAGGAAUGCUGAGCCGGUCAAUCUCUUCCAACACCUGGUGCUCAACCCCAAGGCACAUUCACAGGCAGUGGAAGAGUUCCAAAACCUUCUGACCCAGGUGAAAЖCUCUGCCUCAUGCCCCACUGGCUGCAGCACCUUGAUGUAAAGЖCCAUUAAAAAAAAAACAGAGGAAGGUAUUUCUAAUUCCUUGGGCUA
Sequence (SHORT NAMES ENCODING) GGACGGCGGGAGCGGCUGCGGCGCGCGGGCGCCCUCGGAGCCGCGUGCUGGGGGUCGUAGGGGCCCACCGCGCUCAGCCAGACGUUCAGACGCUCGGACAAGCAUGGUCUAUAACCCAGGAAAGGGGAGCAGGGCCACUCCCGCGGGCGGCCCCAGCGAUGAACCGGACGCCCCCACCCUGCCGGGAAAAAAGCAGUGGCGGUCAGGCCGCGCUGUCUCUUUAAGAUCGUGUUCCUACUAACACUGACGGGCUCCUAGAGAGGGCGGGGAGACGAAGCAAGGCCAAGUUCCAAAGGGAGGAUAGGCCCAGCUGGCUUCAGCGUCCACACGGCAUAGUCCUUCAUGAAUGUUGAUGCAGAGGCCUCCAUGGCUGUGAUAAGCCUGCUGUUCUUGGCAGUGAUGUAUGUUGUUCACCACCCUCUGAUGGUCAGUGAUCGGAUGGACCUGGACACAUUAGCCAGGAGUCGGCAGCUGGAGAAGCGAAUGAGUGAGGAGAUGCGCCUGCUAGAGAUGGAGUUUGAAGAGAGAAAGCGAGCCGCUGAGCAGAGGCAGAAGGCAGAGAACUUCUGGACAGGAGACACAUCCAGUGACCAGUUAGUGCUGGGGAAGAAAGm6ACAUGGGGUGGCCGUUCCAGGCCGAUGGCCAGGAAGGGCCUCUGGGCUGGAUGCUGGGAAACCUGUGGAm6ACACUGGCCUCUUUUGCCUUUUUCUCGUCUUUGAGCUCCUGCGACAGAACAUGCAGCAUGAACCGGCCUUUGAUUCCAGCAGUGAGGAGGAGGAGGAGGAAGUCCGUGUUGUCCCUGUCACCUCUUACAACUGGCUUACUGm6ACUUCCCCUCCCAGGAGGCCCUGGm6ACUCCUUUUACAAm6ACACUAUGUCCAAAAUGCCAUCCGUGACCUGCCCUGCACCUGUGAGUUUGUGGAGAGUUUUGUGGAUGAUCUCAUUGAGGCCUGUCGGGUGCUCAGCCGCCAAGAGGCUCACCCACAAUUGGAAGm6ACUGCCUGGGCAUCGGGGCUGCCUUUGAGAAAUGGGGAACCCUCCAUGAGACCCAGAAAUUUGAUAUCCUGGUGCCCAUUGUCCCCCCACAGGGCACCAUGUUUGUCCUGGAGAUGAGGGACCCAGCCCUGGGCCGCCGCUGUGGCUGUGUGCUGGUGGAGUCAGAAUGUGUGUGCAAGCGUGAGAAACUCCUAGGGGACGUGCUGUGCCUGGUGCACCACCACAGGGm6ACCCCUCGGCAGUCUUGGGGAAGUGUAGUAGCUCCAUCAAGGCAGCUCUCUGCACCGGCUUCCACCUAGACGUGUGCAAGm6ACUGUGCAGUGGUUCCGGAACAUGAUGGGCAAUGCCUGGGCCCUUGUGGCCCACAAGUAUGm6ACUYUAAACUCAGUCUCCCACCGUCUACCACCUCCUGCAAGCUCCGGCUGGm6ACUAUCGCUCAGGCCGCUUUCUCUCAAUCCACUUGGUCCUGGGGGUGCAACGAGAAGACACCUUGGUCUACCUGGUGAGUCAGGCUCCUGACCAGGAGCAGCUCACCAGUGUGGm6ACUGGCCUGAGUCCUUUGUGGCCUGUGAGCACCUGUUCCUGAAGCUGGUGGGGCGCUUUGCCCCCGAGAACACCUGUCACCUCAAGUGCCUCCAGAUCAUUUUAAGUCUCCGGCAGCAUCAGAGCUUACCCCAUGGAGCAUCCCGCCCCAYCCUCACUUCUUACCAUUUUAAAACAGCUCUCAUGCACCUCUUGCUACGGCUGCCCCUCACGGm6ACUGGGCCCACAACAUGCUCUCUCAGCGGCUCCAGGm6ACAUUCUCUGGUUCUUGGGCCGUGGCCUCCAGCAAAGGUCCCUCCAUCAUUUCCUCAUUGGUAACAAUUUUCUGCCCCUGACCAUCCCAAUCCCUAAGm6ACAUUUAGGAAUGCUGAGCCGGUCAAUCUCUUCCAACACCUGGUGCUCAACCCCAAGGCACAUUCACAGGCAGUGGAAGAGUUCCAAAACCUUCUGACCCAGGUGAAAm6ACUCUGCCUCAUGCCCCACUGGCUGCAGCACCUUGAUGUAAAGm6ACCAUUAAAAAAAAAACAGAGGAAGGUAUUUCUAAUUCCUUGGGCUA
Sequence (MODOMICS CODE ENCODING) GGACGGCGGGAGCGGCUGCGGCGCGCGGGCGCCCUCGGAGCCGCGUGCUGGGGGUCGUAGGGGCCCACCGCGCUCAGCCAGACGUUCAGACGCUCGGACAAGCAUGGUCUAUAACCCAGGAAAGGGGAGCAGGGCCACUCCCGCGGGCGGCCCCAGCGAUGAACCGGACGCCCCCACCCUGCCGGGAAAAAAGCAGUGGCGGUCAGGCCGCGCUGUCUCUUUAAGAUCGUGUUCCUACUAACACUGACGGGCUCCUAGAGAGGGCGGGGAGACGAAGCAAGGCCAAGUUCCAAAGGGAGGAUAGGCCCAGCUGGCUUCAGCGUCCACACGGCAUAGUCCUUCAUGAAUGUUGAUGCAGAGGCCUCCAUGGCUGUGAUAAGCCUGCUGUUCUUGGCAGUGAUGUAUGUUGUUCACCACCCUCUGAUGGUCAGUGAUCGGAUGGACCUGGACACAUUAGCCAGGAGUCGGCAGCUGGAGAAGCGAAUGAGUGAGGAGAUGCGCCUGCUAGAGAUGGAGUUUGAAGAGAGAAAGCGAGCCGCUGAGCAGAGGCAGAAGGCAGAGAACUUCUGGACAGGAGACACAUCCAGUGACCAGUUAGUGCUGGGGAAGAAAG2000000006ACAUGGGGUGGCCGUUCCAGGCCGAUGGCCAGGAAGGGCCUCUGGGCUGGAUGCUGGGAAACCUGUGGA2000000006ACACUGGCCUCUUUUGCCUUUUUCUCGUCUUUGAGCUCCUGCGACAGAACAUGCAGCAUGAACCGGCCUUUGAUUCCAGCAGUGAGGAGGAGGAGGAGGAAGUCCGUGUUGUCCCUGUCACCUCUUACAACUGGCUUACUG2000000006ACUUCCCCUCCCAGGAGGCCCUGG2000000006ACUCCUUUUACAA2000000006ACACUAUGUCCAAAAUGCCAUCCGUGACCUGCCCUGCACCUGUGAGUUUGUGGAGAGUUUUGUGGAUGAUCUCAUUGAGGCCUGUCGGGUGCUCAGCCGCCAAGAGGCUCACCCACAAUUGGAAG2000000006ACUGCCUGGGCAUCGGGGCUGCCUUUGAGAAAUGGGGAACCCUCCAUGAGACCCAGAAAUUUGAUAUCCUGGUGCCCAUUGUCCCCCCACAGGGCACCAUGUUUGUCCUGGAGAUGAGGGACCCAGCCCUGGGCCGCCGCUGUGGCUGUGUGCUGGUGGAGUCAGAAUGUGUGUGCAAGCGUGAGAAACUCCUAGGGGACGUGCUGUGCCUGGUGCACCACCACAGGG2000000006ACCCCUCGGCAGUCUUGGGGAAGUGUAGUAGCUCCAUCAAGGCAGCUCUCUGCACCGGCUUCCACCUAGACGUGUGCAAG2000000006ACUGUGCAGUGGUUCCGGAACAUGAUGGGCAAUGCCUGGGCCCUUGUGGCCCACAAGUAUG2000000006ACU2000000009UUAAACUCAGUCUCCCACCGUCUACCACCUCCUGCAAGCUCCGGCUGG2000000006ACUAUCGCUCAGGCCGCUUUCUCUCAAUCCACUUGGUCCUGGGGGUGCAACGAGAAGACACCUUGGUCUACCUGGUGAGUCAGGCUCCUGACCAGGAGCAGCUCACCAGUGUGG2000000006ACUGGCCUGAGUCCUUUGUGGCCUGUGAGCACCUGUUCCUGAAGCUGGUGGGGCGCUUUGCCCCCGAGAACACCUGUCACCUCAAGUGCCUCCAGAUCAUUUUAAGUCUCCGGCAGCAUCAGAGCUUACCCCAUGGAGCAUCCCGCCCCA2000000009UCCUCACUUCUUACCAUUUUAAAACAGCUCUCAUGCACCUCUUGCUACGGCUGCCCCUCACGG2000000006ACUGGGCCCACAACAUGCUCUCUCAGCGGCUCCAGG2000000006ACAUUCUCUGGUUCUUGGGCCGUGGCCUCCAGCAAAGGUCCCUCCAUCAUUUCCUCAUUGGUAACAAUUUUCUGCCCCUGACCAUCCCAAUCCCUAAG2000000006ACAUUUAGGAAUGCUGAGCCGGUCAAUCUCUUCCAACACCUGGUGCUCAACCCCAAGGCACAUUCACAGGCAGUGGAAGAGUUCCAAAACCUUCUGACCCAGGUGAAA2000000006ACUCUGCCUCAUGCCCCACUGGCUGCAGCACCUUGAUGUAAAG2000000006ACCAUUAAAAAAAAAACAGAGGAAGGUAUUUCUAAUUCCUUGGGCUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 614 683 824 848 861 986 1214 1294 1355 1358 1406 1520 1670 1733 1769 1867 1975 2018
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A Y m6A m6A Y m6A m6A m6A m6A m6A
Genomic Coordinates 2:96326903:+ 2:96326972:+ 2:96327113:+ 2:96327137:+ 2:96327150:+ 2:96327275:+ 2:96327503:+ 2:96327583:+ 2:96327644:+ 2:96327647:+ 2:96327695:+ 2:96327809:+ 2:96327959:+ 2:96328022:+ 2:96328058:+ 2:96328156:+ 2:96328264:+ 2:96328307:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
aHkqKEJkRYyb
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
4HMi5ykupT9V
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
4HMi5ykupT9V
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
BkoLW2CBToyL
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
BkoLW2CBToyL
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
BkoLW2CBToyL
BtsJQJ3DteUq
Yfn77uLS5tv8
4HMi5ykupT9V
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
BkoLW2CBToyL
nfCHyrYzE6fB
BtsJQJ3DteUq
Yfn77uLS5tv8