Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000697738
Gene ID: ENSG00000153201
Gene Name: RANBP2
Sequence (UNICHARACTER ENCODING) GGCUACGGCGCUGCGUCACUGGUUUGCAGGCGCUUUCCUCUUGGAAGUGGCGACUGCUGCGGGCCUGAGCGCUGGUCUCACGCGCCUCGGGAGCCAGGUUGGCGGCGCGAUGAGGCGCAGCAAGGCUGACGUGGAGCGGUACAUCGCCUCGGUGCAGGGCUCCACCCCGUCGCCUCGACAGAAGUCAAUGAAAGGAUUCUAUUUUGCAAAGCUGUAUUAUGAAGCUAAAGAAUAUGAUCUUGCUAAAAAAUACAUAUGUACUUACЖUUAAUGUGCAAGAGAGGGAUCCCAAAGCUCACAGAUUUCUGGGUCUUCUUUAUGAAUUGGAAGAAAACACAGACAAAGCCGUUGAAUGUUACAGGCGUUCAGUGGAAUUAAACCCAACACAAAAAGAUCUUGUGUUGAAGAUUGCAGAAUUGCUUUGUAAAAAUGAUGUUACUGAUGGAAGAGCAAAAUACUGGCUUGAAAGAGCAGCCAAACUUUUCCCAGGAAGUCCUGCAAUUUAUAAACUAAAGGAACAGCUUCUAGAUUGUGAAGGUGAAGAUGGAUGGAAUAAACUUUUUGACUUGAUUCAGUCAGAACUUUAUGUAAGACCUGAUGACGUCCAUGUGAACAUCCGGCUAGUGGAGGUGUAUCGCUCAACUAAAAGAUUGAAGGAUGCUGUGGCCCACUGCCAUGAGGCAGAGAGGAACAUAGCUUUGCGUUCAAGUUUAGAAUGGAAUUCGUGUGUUGUACAGACCCUUAAGGAAUAUCUGGAGUCUUUACAGUGUUUGGAGUCUGAUAAAAGUGACUGGCGAGCAACCAAUACAGACUUACUGCUGGCCUAUGCUAAUCUUAUGCUUCUUACGCUUUCCACUAGAGAUGUGCAGGAAAGUAGAGAAUUACUGCAAAGUUUUGAUAGUGCUCUUCAGUCUGUGAAAUCUUUGGGUGGAAAUGAUGAACUGUCAGCUACUUUCUUAGAAAUGAAAGGЖCAUUUCUACAUGCAUGCUGGUUCUCUGCUUUUGAAGAUGGGUCAGCAUAGUAGUAAUGUUCAAUGGCGAGCUCUUUCUGAGCUGGCUGCAUUGUGCUAUCUCAUAGCAUUUCAGGUUCCAAGACCAAAGAUUAAAUUAAUAAAAGGUGAAGCUGGACAAAAUCUGCUGGAAAUGAUGGCCUGUGACCGACUGAGCCAAUCAGGGCACAUGUUGCUAAACUUAAGUCGUGGCAAGCAAGAUUUUUUAAAAGAGAUUGUUGAAACUUUUGCCAACAAAAGCGGGCAGUCUGCAUUAUAUGAUGCUCUGUUUUCUAGUCAGUCACCUAAGGAUACAUCUUUUCUUGGUAGCGAUGAUAUUGGAAACAUUGAUGUACGAGAACCAGAGCUUGAAGAUUUGACUAGAUACGAUGUUGGUGCUAUUCGAGCACAUAAUGGUAGUCUUCAGCACCUUACUUGGCUUGGCUUACAGUGGAAUUCAUUGCCUGCUUUACCUGGAAUCCGAAAAUGGCUAAAACAGCUUUUCCAUCAUUUGCCCCAUGAAACCUCAAGGCUUGAAACAAAUGCACCUGAAUCAAUAUGUAUUUUAGAUCUUGAAGUAAGCAAAGAUUUUAACAAAUUAAAUAUUCUGAAUUUUGUUUAAUUUUUUUUCUAACUUAACUUUUCCUUAAAUAAAACAGGUAUUUCUCCUUGGAGUAGUAUAUACCAGCCACUUACAAUUAAAGGAGAAAUGUAAUUCUCACCACAGCUCCUAUCAGCCGUUAUGCCUGCCCCUUCCUGUGUGUAAACAGCUUUGUACAGAAAGACAAAAAUCUUGGUGGGAUGCGGUUUGUACUCUGAUUCACAGAAAAGCAGUGUAAGUAGUAAAACAAAAAUAUUGCUUUCACUUAGUGCGUAGGUUUUACCGGGGAUUUAAUCCUCAUGUGAAGAUUUAAUUUGUCAUGUGACCCAUUAACAUAUAUGUAUGUAAGCCCUGAACUGUGUAUUUAGAAAGCAAUUUUAGUAAAUUGAACUAUUUUUUAGACCUGGAAACGUAGCAAAAUUGAGACUUCUAGUUCAGCAUGAAAUAAACACUCUAAGAGCCCAGGAAAAACAUGGCCUUCAACCUGCUCUGCUUGUACAUUGGGCAGAAUGCCUUCAGAAAACGGUGAGUUUUAAAGUAUAAGCAUUUUUAAAGAACAUUACCUUAAUUUUUUAAAAUCAUGAACUUUUUAUUGAAAGUUUUUUUGUUCUGAAAACAGCAGCUUGGUCACAUUAUGACAGAUGUGUUUUUUAUUGCUGCAAAAUAGUUAAUGUAGUUAAAUAUAAGCACUUAGAGGAGCAAUGCCUGGCACACAGUGAAUGUUACAUAUUAGCUGAGCUGUUACUGUUAUUCCUUAAUAAUUAAGUUCUGAUAAUUAUUCAGCCUGAAAAUUAAAAAAAAAAAUUAGCACAAGGCUUUGUAGGUAAGACCAUUAUAGAUCUUUCUAUAUACUUAAGGUGUGUUUUGUGUCACCAUGAGGUGUAGAUGGUCAGCCUUUUGAACAAACUGACACUACAGAAGAGGCAGGUUUCAGCUAUCUAAAAAUGGCAACUGUUAAAAAGUAGUUUGGAUUGCUACGUUAGGAUGGUAUCAUUAGAAGCGUUUAAAAGUUGAGUGUAGAGGCCGGGUGCGGUGGCUCACACCUGUAAUCCCAGCACGUUAGGAGGCCGAGGCGGGCAGAUCACAAGGUCAGGAGAUCGAGAUCAUUCCUGGCUAACACGGUGAAACCCCGUCUCUAC
Sequence (SHORT NAMES ENCODING) GGCUACGGCGCUGCGUCACUGGUUUGCAGGCGCUUUCCUCUUGGAAGUGGCGACUGCUGCGGGCCUGAGCGCUGGUCUCACGCGCCUCGGGAGCCAGGUUGGCGGCGCGAUGAGGCGCAGCAAGGCUGACGUGGAGCGGUACAUCGCCUCGGUGCAGGGCUCCACCCCGUCGCCUCGACAGAAGUCAAUGAAAGGAUUCUAUUUUGCAAAGCUGUAUUAUGAAGCUAAAGAAUAUGAUCUUGCUAAAAAAUACAUAUGUACUUACm6AUUAAUGUGCAAGAGAGGGAUCCCAAAGCUCACAGAUUUCUGGGUCUUCUUUAUGAAUUGGAAGAAAACACAGACAAAGCCGUUGAAUGUUACAGGCGUUCAGUGGAAUUAAACCCAACACAAAAAGAUCUUGUGUUGAAGAUUGCAGAAUUGCUUUGUAAAAAUGAUGUUACUGAUGGAAGAGCAAAAUACUGGCUUGAAAGAGCAGCCAAACUUUUCCCAGGAAGUCCUGCAAUUUAUAAACUAAAGGAACAGCUUCUAGAUUGUGAAGGUGAAGAUGGAUGGAAUAAACUUUUUGACUUGAUUCAGUCAGAACUUUAUGUAAGACCUGAUGACGUCCAUGUGAACAUCCGGCUAGUGGAGGUGUAUCGCUCAACUAAAAGAUUGAAGGAUGCUGUGGCCCACUGCCAUGAGGCAGAGAGGAACAUAGCUUUGCGUUCAAGUUUAGAAUGGAAUUCGUGUGUUGUACAGACCCUUAAGGAAUAUCUGGAGUCUUUACAGUGUUUGGAGUCUGAUAAAAGUGACUGGCGAGCAACCAAUACAGACUUACUGCUGGCCUAUGCUAAUCUUAUGCUUCUUACGCUUUCCACUAGAGAUGUGCAGGAAAGUAGAGAAUUACUGCAAAGUUUUGAUAGUGCUCUUCAGUCUGUGAAAUCUUUGGGUGGAAAUGAUGAACUGUCAGCUACUUUCUUAGAAAUGAAAGGm6ACAUUUCUACAUGCAUGCUGGUUCUCUGCUUUUGAAGAUGGGUCAGCAUAGUAGUAAUGUUCAAUGGCGAGCUCUUUCUGAGCUGGCUGCAUUGUGCUAUCUCAUAGCAUUUCAGGUUCCAAGACCAAAGAUUAAAUUAAUAAAAGGUGAAGCUGGACAAAAUCUGCUGGAAAUGAUGGCCUGUGACCGACUGAGCCAAUCAGGGCACAUGUUGCUAAACUUAAGUCGUGGCAAGCAAGAUUUUUUAAAAGAGAUUGUUGAAACUUUUGCCAACAAAAGCGGGCAGUCUGCAUUAUAUGAUGCUCUGUUUUCUAGUCAGUCACCUAAGGAUACAUCUUUUCUUGGUAGCGAUGAUAUUGGAAACAUUGAUGUACGAGAACCAGAGCUUGAAGAUUUGACUAGAUACGAUGUUGGUGCUAUUCGAGCACAUAAUGGUAGUCUUCAGCACCUUACUUGGCUUGGCUUACAGUGGAAUUCAUUGCCUGCUUUACCUGGAAUCCGAAAAUGGCUAAAACAGCUUUUCCAUCAUUUGCCCCAUGAAACCUCAAGGCUUGAAACAAAUGCACCUGAAUCAAUAUGUAUUUUAGAUCUUGAAGUAAGCAAAGAUUUUAACAAAUUAAAUAUUCUGAAUUUUGUUUAAUUUUUUUUCUAACUUAACUUUUCCUUAAAUAAAACAGGUAUUUCUCCUUGGAGUAGUAUAUACCAGCCACUUACAAUUAAAGGAGAAAUGUAAUUCUCACCACAGCUCCUAUCAGCCGUUAUGCCUGCCCCUUCCUGUGUGUAAACAGCUUUGUACAGAAAGACAAAAAUCUUGGUGGGAUGCGGUUUGUACUCUGAUUCACAGAAAAGCAGUGUAAGUAGUAAAACAAAAAUAUUGCUUUCACUUAGUGCGUAGGUUUUACCGGGGAUUUAAUCCUCAUGUGAAGAUUUAAUUUGUCAUGUGACCCAUUAACAUAUAUGUAUGUAAGCCCUGAACUGUGUAUUUAGAAAGCAAUUUUAGUAAAUUGAACUAUUUUUUAGACCUGGAAACGUAGCAAAAUUGAGACUUCUAGUUCAGCAUGAAAUAAACACUCUAAGAGCCCAGGAAAAACAUGGCCUUCAACCUGCUCUGCUUGUACAUUGGGCAGAAUGCCUUCAGAAAACGGUGAGUUUUAAAGUAUAAGCAUUUUUAAAGAACAUUACCUUAAUUUUUUAAAAUCAUGAACUUUUUAUUGAAAGUUUUUUUGUUCUGAAAACAGCAGCUUGGUCACAUUAUGACAGAUGUGUUUUUUAUUGCUGCAAAAUAGUUAAUGUAGUUAAAUAUAAGCACUUAGAGGAGCAAUGCCUGGCACACAGUGAAUGUUACAUAUUAGCUGAGCUGUUACUGUUAUUCCUUAAUAAUUAAGUUCUGAUAAUUAUUCAGCCUGAAAAUUAAAAAAAAAAAUUAGCACAAGGCUUUGUAGGUAAGACCAUUAUAGAUCUUUCUAUAUACUUAAGGUGUGUUUUGUGUCACCAUGAGGUGUAGAUGGUCAGCCUUUUGAACAAACUGACACUACAGAAGAGGCAGGUUUCAGCUAUCUAAAAAUGGCAACUGUUAAAAAGUAGUUUGGAUUGCUACGUUAGGAUGGUAUCAUUAGAAGCGUUUAAAAGUUGAGUGUAGAGGCCGGGUGCGGUGGCUCACACCUGUAAUCCCAGCACGUUAGGAGGCCGAGGCGGGCAGAUCACAAGGUCAGGAGAUCGAGAUCAUUCCUGGCUAACACGGUGAAACCCCGUCUCUAC
Sequence (MODOMICS CODE ENCODING) GGCUACGGCGCUGCGUCACUGGUUUGCAGGCGCUUUCCUCUUGGAAGUGGCGACUGCUGCGGGCCUGAGCGCUGGUCUCACGCGCCUCGGGAGCCAGGUUGGCGGCGCGAUGAGGCGCAGCAAGGCUGACGUGGAGCGGUACAUCGCCUCGGUGCAGGGCUCCACCCCGUCGCCUCGACAGAAGUCAAUGAAAGGAUUCUAUUUUGCAAAGCUGUAUUAUGAAGCUAAAGAAUAUGAUCUUGCUAAAAAAUACAUAUGUACUUAC2000000006AUUAAUGUGCAAGAGAGGGAUCCCAAAGCUCACAGAUUUCUGGGUCUUCUUUAUGAAUUGGAAGAAAACACAGACAAAGCCGUUGAAUGUUACAGGCGUUCAGUGGAAUUAAACCCAACACAAAAAGAUCUUGUGUUGAAGAUUGCAGAAUUGCUUUGUAAAAAUGAUGUUACUGAUGGAAGAGCAAAAUACUGGCUUGAAAGAGCAGCCAAACUUUUCCCAGGAAGUCCUGCAAUUUAUAAACUAAAGGAACAGCUUCUAGAUUGUGAAGGUGAAGAUGGAUGGAAUAAACUUUUUGACUUGAUUCAGUCAGAACUUUAUGUAAGACCUGAUGACGUCCAUGUGAACAUCCGGCUAGUGGAGGUGUAUCGCUCAACUAAAAGAUUGAAGGAUGCUGUGGCCCACUGCCAUGAGGCAGAGAGGAACAUAGCUUUGCGUUCAAGUUUAGAAUGGAAUUCGUGUGUUGUACAGACCCUUAAGGAAUAUCUGGAGUCUUUACAGUGUUUGGAGUCUGAUAAAAGUGACUGGCGAGCAACCAAUACAGACUUACUGCUGGCCUAUGCUAAUCUUAUGCUUCUUACGCUUUCCACUAGAGAUGUGCAGGAAAGUAGAGAAUUACUGCAAAGUUUUGAUAGUGCUCUUCAGUCUGUGAAAUCUUUGGGUGGAAAUGAUGAACUGUCAGCUACUUUCUUAGAAAUGAAAGG2000000006ACAUUUCUACAUGCAUGCUGGUUCUCUGCUUUUGAAGAUGGGUCAGCAUAGUAGUAAUGUUCAAUGGCGAGCUCUUUCUGAGCUGGCUGCAUUGUGCUAUCUCAUAGCAUUUCAGGUUCCAAGACCAAAGAUUAAAUUAAUAAAAGGUGAAGCUGGACAAAAUCUGCUGGAAAUGAUGGCCUGUGACCGACUGAGCCAAUCAGGGCACAUGUUGCUAAACUUAAGUCGUGGCAAGCAAGAUUUUUUAAAAGAGAUUGUUGAAACUUUUGCCAACAAAAGCGGGCAGUCUGCAUUAUAUGAUGCUCUGUUUUCUAGUCAGUCACCUAAGGAUACAUCUUUUCUUGGUAGCGAUGAUAUUGGAAACAUUGAUGUACGAGAACCAGAGCUUGAAGAUUUGACUAGAUACGAUGUUGGUGCUAUUCGAGCACAUAAUGGUAGUCUUCAGCACCUUACUUGGCUUGGCUUACAGUGGAAUUCAUUGCCUGCUUUACCUGGAAUCCGAAAAUGGCUAAAACAGCUUUUCCAUCAUUUGCCCCAUGAAACCUCAAGGCUUGAAACAAAUGCACCUGAAUCAAUAUGUAUUUUAGAUCUUGAAGUAAGCAAAGAUUUUAACAAAUUAAAUAUUCUGAAUUUUGUUUAAUUUUUUUUCUAACUUAACUUUUCCUUAAAUAAAACAGGUAUUUCUCCUUGGAGUAGUAUAUACCAGCCACUUACAAUUAAAGGAGAAAUGUAAUUCUCACCACAGCUCCUAUCAGCCGUUAUGCCUGCCCCUUCCUGUGUGUAAACAGCUUUGUACAGAAAGACAAAAAUCUUGGUGGGAUGCGGUUUGUACUCUGAUUCACAGAAAAGCAGUGUAAGUAGUAAAACAAAAAUAUUGCUUUCACUUAGUGCGUAGGUUUUACCGGGGAUUUAAUCCUCAUGUGAAGAUUUAAUUUGUCAUGUGACCCAUUAACAUAUAUGUAUGUAAGCCCUGAACUGUGUAUUUAGAAAGCAAUUUUAGUAAAUUGAACUAUUUUUUAGACCUGGAAACGUAGCAAAAUUGAGACUUCUAGUUCAGCAUGAAAUAAACACUCUAAGAGCCCAGGAAAAACAUGGCCUUCAACCUGCUCUGCUUGUACAUUGGGCAGAAUGCCUUCAGAAAACGGUGAGUUUUAAAGUAUAAGCAUUUUUAAAGAACAUUACCUUAAUUUUUUAAAAUCAUGAACUUUUUAUUGAAAGUUUUUUUGUUCUGAAAACAGCAGCUUGGUCACAUUAUGACAGAUGUGUUUUUUAUUGCUGCAAAAUAGUUAAUGUAGUUAAAUAUAAGCACUUAGAGGAGCAAUGCCUGGCACACAGUGAAUGUUACAUAUUAGCUGAGCUGUUACUGUUAUUCCUUAAUAAUUAAGUUCUGAUAAUUAUUCAGCCUGAAAAUUAAAAAAAAAAAUUAGCACAAGGCUUUGUAGGUAAGACCAUUAUAGAUCUUUCUAUAUACUUAAGGUGUGUUUUGUGUCACCAUGAGGUGUAGAUGGUCAGCCUUUUGAACAAACUGACACUACAGAAGAGGCAGGUUUCAGCUAUCUAAAAAUGGCAACUGUUAAAAAGUAGUUUGGAUUGCUACGUUAGGAUGGUAUCAUUAGAAGCGUUUAAAAGUUGAGUGUAGAGGCCGGGUGCGGUGGCUCACACCUGUAAUCCCAGCACGUUAGGAGGCCGAGGCGGGCAGAUCACAAGGUCAGGAGAUCGAGAUCAUUCCUGGCUAACACGGUGAAACCCCGUCUCUAC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 266 970
Modification Positions m6A m6A
Genomic Coordinates 2:108730790:+ 2:108740567:+
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs 3kRDPWwiRCgi
L6w2k2VEv4EY
4HMi5ykupT9V
5aTkEfEpX8Xm
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
KTLz8piFYdwC
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML