Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000438943
Gene ID: ENSG00000135953
Gene Name: MFSD9
Sequence (UNICHARACTER ENCODING) GGGGCGGGGCUGGGCUCCCGGGGUAGGUCCGCGGCUGCUGCUGCGUCCGACCCCCGGCCGGCGCGGGUAUGGAGCUUGGGGGUCACUGGGACAUGAACUCGGCCCCGAGGCUGGUCUCGGAGACCGCAGAGCGGAAACAGGAGCAGAAGACAGGAACCGAGGCGGAGGCUGCCGACUCCGGUGCCGUCGGAGCCCGCCGCUUCCUGCUCUGUCUCUACUUGGUGGGCUUCUUGGAUUUGUUUGGUGUCAGCAUGGUUGUGCCUUUAUUGAGCCUUCAUGUCAAGUCCCUUGGAGCAAGUCCAACAGUUGCUGGAAUAGUAGACGACGUAUGUUCAAAGAGAUUUUGAGAUUUGAGCACUAUAACCAAGUCCCAUGCCACUAGUGGCAACAGGUACUUAUGGAGCCUCUGCAAGGAGCUGGCUGUGUGUAUAAAAGGGCUCCUCCUAUGGCAUUUUGCAACUCUUUUCUAGCACAUUGGUGGGCUGCUGGAGCGAUGUAGUGGGAAGACGGUCUUCCUUGCUGGCAUGCAUUCUACUCAGUGCUCUGGGCUAUCUCCUUCUCGGAGCAGCCACCAAUGUGUUUCUGUUUGUCCUGGCUAGAGUCCCGGCAGGUAUUUUUAAACACACUCUCUCCAUCUCAAGGGCUCUACUUUCUGAUGUGGUUCCAGAGAAGGAACGGCCGCUUGUAAUCGGACACUUCAACACAGCCUCCGGUGUGGGCUUCAUCUUGGGCCCCGUGGUCGGUGGCUAUCUCACUGAAUUAGAGGAUGGGUUUUAUCUCACAGCCUUCAUCUGCUUUUUGGUCUUCAUUCUCAAUGCUGGUCUCGUUUGGUUCUUUCCAUGGAGGGAAGCAAAACCGGGCAGUACAGAGAAGGGCCUGCCAUUGCGAAAGACCCAUGUGCUGUUGGGAAGGAGCCAUGACACAGUGCAGGAGGCAGCCACCAGCCGCAGAGCCAGGGCCAGCAAGAAGACUGCCCAGCCCUGGGUCGAAGUAGUGUUGGCCUUGCGGAACAUGAAGAACCUGCUGUUUUCCGAAAUGUGGGЖCAUAUUUCUGGUGCGCUUGCUGAUGGCCAUGGCAGUCAUGCUGUACUACAGUAЖCUUUGUCCUGGCCCUGGAGGAGCGCUUUGGGGUGCGGCCCAAGGUGACAGGCUACCUCAUCAGUUACAGCAGCAUGCUGGGGGCCGUGGCCGGCCUUGCCCUGGGGCCAAUCCUACGGCUGUACAAGCACAACUCGCAGGCACUGCUGCUGCAUUCCAGCAUACUCACCUGCACACUGCUGCUGCUCUACUCCUUGGCCCCCACCAUGGGUGCAGUUGUCCUCUCCUCCACUCUCCUGUCCUUCUCCACUGCCAUUGGCAGGACGUGCAUCACGGЖCCUCCAGCUGЖCUGUGGGCGGGGCCCAGGCCAGCGGCACCCUUAUUGGCGUGGGGCAGUCUGUGЖCUGCAGUGGGCCGCAUCAUCGCCCCUCUCCUCUCGGGGGUUGCCCAGGAGGUCAGCCCUUGCGGCCCCCCCAGCCUGGGCGCUGUGUUAGCCUUAGUGGCCAUUUUCAUAAUGUCUCUAAACAAGCGACACUCUAGUGGUGAUGGGAAUAGUAAAUUAAAAAGUGAGUAGAUGGAUUUGGACAACAUAAAGCAACAAAAUUUGAGAUGGUUGAAUGAGGGCCGGAGGCCAUGAUGAAAAGGGCACUUUGGAAAGGGUUGGGGUGGAAGGGAAAUAUUUCCGGGUGGGUGUGAGCUGUUGGGCUUCCAGGUCAGCUCUUGGCCAUGCAGCCAUGCCUGCAGGAUGAUCAGAAGUCACGGCACCUCAUGGGAAGGUUAAGACUGGAGCAAAGCUUUUCCAAGGUGAGCAUAUUCAGCGUUUACCUGGAAGUCUCUUCUUCCCACCUGGGCUAAUCAGGUUACAAUUUUCAAGGGUAAACAAACUACCAGCUACAGGAUAGGGAAGUGGUGGUGGAAUAAGAGAACAUGAUACCUGGAGGAAGGGAAGAAACCACAAGCAUUUUCCUACUGAAAAAUAGGGUGACAUGUCAGUCAAAUUCUGAUCAACUGGAACUUGAGUUUCCAGUUAAAUUCCAUACACUAGGAGGGAGUUUUCUAUCAAAAUCCUGCAGAUUGAAGAAGCUGGUUUAUUAGAACCAGCCUGUCGCUUUUCAAAGCUGCUUAAAAAUAAGAUACUGACCUCACCCCUAGAGAUGAUUCAGUGGGCCUGGGUGGGGCCAAGAAAUCCGUGGUGUUUUGUAAGCACUGCUGGCGAUUUCUCAUGGCAGUAAAGACCACACUGAGACUGCACUGAUUUUGAUUAAAGUACAUAGGCUUGGCUGUUUUUACACAGCUAACUAAAUUUGGACUCUUAAAAUUGUGUUUGUAAUCACAGUGUGUUACACCUUUCCCAGCUCUCAGCAGUUGUACUGCAUGAUGGAGCAGCGGGCCCCUGGGACCUGUUCCCUGUGCUCCCUGCCUCUGAGAGCCCAGCUUGCUCUGAAGUUGGACUAAACCACUUAGAUGCUGGGGUUGCCACAGCCUGCUCCUGGAAGCCUGCAUUCCAGUCAGGUUGCAUCCUUCUGGUGCUGACAGAACCCAGUGGUGAAGCCAAAGCACAGGAAUGCUUUAAAAAUGAACAGUUUAUGCAGAAUAAGGGUCAGGAGUCAUGCCAGACCAGAACUUGAUGCUACUGUGUCUUGUGUUAAGAAUCAUUUCCUGGCCAGGCUCGGUGGCUCAGGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGGCAGGUGAAUCACUUGGUCAGGAGAUGGAGACCAUUCUGGCUAACAUGGUGAAACCCCGUCUCUACUAAAAAUACAAAAAAAAAAUUAGCCGGGCGUGAUGGCGGGCGCCUGCAGUCCCAGCUAUUCGGGAGGCUGAGGUAGAAUGGCGUGAACCUGGGAGGCGGAGCUUGCGGUGAGCCAAGAUUGUGCCACUGCUCUCCAGCCUGGGCGACAGAGUGAGACUCCGUCUCAAAAAAAAAAGAA
Sequence (SHORT NAMES ENCODING) GGGGCGGGGCUGGGCUCCCGGGGUAGGUCCGCGGCUGCUGCUGCGUCCGACCCCCGGCCGGCGCGGGUAUGGAGCUUGGGGGUCACUGGGACAUGAACUCGGCCCCGAGGCUGGUCUCGGAGACCGCAGAGCGGAAACAGGAGCAGAAGACAGGAACCGAGGCGGAGGCUGCCGACUCCGGUGCCGUCGGAGCCCGCCGCUUCCUGCUCUGUCUCUACUUGGUGGGCUUCUUGGAUUUGUUUGGUGUCAGCAUGGUUGUGCCUUUAUUGAGCCUUCAUGUCAAGUCCCUUGGAGCAAGUCCAACAGUUGCUGGAAUAGUAGACGACGUAUGUUCAAAGAGAUUUUGAGAUUUGAGCACUAUAACCAAGUCCCAUGCCACUAGUGGCAACAGGUACUUAUGGAGCCUCUGCAAGGAGCUGGCUGUGUGUAUAAAAGGGCUCCUCCUAUGGCAUUUUGCAACUCUUUUCUAGCACAUUGGUGGGCUGCUGGAGCGAUGUAGUGGGAAGACGGUCUUCCUUGCUGGCAUGCAUUCUACUCAGUGCUCUGGGCUAUCUCCUUCUCGGAGCAGCCACCAAUGUGUUUCUGUUUGUCCUGGCUAGAGUCCCGGCAGGUAUUUUUAAACACACUCUCUCCAUCUCAAGGGCUCUACUUUCUGAUGUGGUUCCAGAGAAGGAACGGCCGCUUGUAAUCGGACACUUCAACACAGCCUCCGGUGUGGGCUUCAUCUUGGGCCCCGUGGUCGGUGGCUAUCUCACUGAAUUAGAGGAUGGGUUUUAUCUCACAGCCUUCAUCUGCUUUUUGGUCUUCAUUCUCAAUGCUGGUCUCGUUUGGUUCUUUCCAUGGAGGGAAGCAAAACCGGGCAGUACAGAGAAGGGCCUGCCAUUGCGAAAGACCCAUGUGCUGUUGGGAAGGAGCCAUGACACAGUGCAGGAGGCAGCCACCAGCCGCAGAGCCAGGGCCAGCAAGAAGACUGCCCAGCCCUGGGUCGAAGUAGUGUUGGCCUUGCGGAACAUGAAGAACCUGCUGUUUUCCGAAAUGUGGGm6ACAUAUUUCUGGUGCGCUUGCUGAUGGCCAUGGCAGUCAUGCUGUACUACAGUAm6ACUUUGUCCUGGCCCUGGAGGAGCGCUUUGGGGUGCGGCCCAAGGUGACAGGCUACCUCAUCAGUUACAGCAGCAUGCUGGGGGCCGUGGCCGGCCUUGCCCUGGGGCCAAUCCUACGGCUGUACAAGCACAACUCGCAGGCACUGCUGCUGCAUUCCAGCAUACUCACCUGCACACUGCUGCUGCUCUACUCCUUGGCCCCCACCAUGGGUGCAGUUGUCCUCUCCUCCACUCUCCUGUCCUUCUCCACUGCCAUUGGCAGGACGUGCAUCACGGm6ACCUCCAGCUGm6ACUGUGGGCGGGGCCCAGGCCAGCGGCACCCUUAUUGGCGUGGGGCAGUCUGUGm6ACUGCAGUGGGCCGCAUCAUCGCCCCUCUCCUCUCGGGGGUUGCCCAGGAGGUCAGCCCUUGCGGCCCCCCCAGCCUGGGCGCUGUGUUAGCCUUAGUGGCCAUUUUCAUAAUGUCUCUAAACAAGCGACACUCUAGUGGUGAUGGGAAUAGUAAAUUAAAAAGUGAGUAGAUGGAUUUGGACAACAUAAAGCAACAAAAUUUGAGAUGGUUGAAUGAGGGCCGGAGGCCAUGAUGAAAAGGGCACUUUGGAAAGGGUUGGGGUGGAAGGGAAAUAUUUCCGGGUGGGUGUGAGCUGUUGGGCUUCCAGGUCAGCUCUUGGCCAUGCAGCCAUGCCUGCAGGAUGAUCAGAAGUCACGGCACCUCAUGGGAAGGUUAAGACUGGAGCAAAGCUUUUCCAAGGUGAGCAUAUUCAGCGUUUACCUGGAAGUCUCUUCUUCCCACCUGGGCUAAUCAGGUUACAAUUUUCAAGGGUAAACAAACUACCAGCUACAGGAUAGGGAAGUGGUGGUGGAAUAAGAGAACAUGAUACCUGGAGGAAGGGAAGAAACCACAAGCAUUUUCCUACUGAAAAAUAGGGUGACAUGUCAGUCAAAUUCUGAUCAACUGGAACUUGAGUUUCCAGUUAAAUUCCAUACACUAGGAGGGAGUUUUCUAUCAAAAUCCUGCAGAUUGAAGAAGCUGGUUUAUUAGAACCAGCCUGUCGCUUUUCAAAGCUGCUUAAAAAUAAGAUACUGACCUCACCCCUAGAGAUGAUUCAGUGGGCCUGGGUGGGGCCAAGAAAUCCGUGGUGUUUUGUAAGCACUGCUGGCGAUUUCUCAUGGCAGUAAAGACCACACUGAGACUGCACUGAUUUUGAUUAAAGUACAUAGGCUUGGCUGUUUUUACACAGCUAACUAAAUUUGGACUCUUAAAAUUGUGUUUGUAAUCACAGUGUGUUACACCUUUCCCAGCUCUCAGCAGUUGUACUGCAUGAUGGAGCAGCGGGCCCCUGGGACCUGUUCCCUGUGCUCCCUGCCUCUGAGAGCCCAGCUUGCUCUGAAGUUGGACUAAACCACUUAGAUGCUGGGGUUGCCACAGCCUGCUCCUGGAAGCCUGCAUUCCAGUCAGGUUGCAUCCUUCUGGUGCUGACAGAACCCAGUGGUGAAGCCAAAGCACAGGAAUGCUUUAAAAAUGAACAGUUUAUGCAGAAUAAGGGUCAGGAGUCAUGCCAGACCAGAACUUGAUGCUACUGUGUCUUGUGUUAAGAAUCAUUUCCUGGCCAGGCUCGGUGGCUCAGGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGGCAGGUGAAUCACUUGGUCAGGAGAUGGAGACCAUUCUGGCUAACAUGGUGAAACCCCGUCUCUACUAAAAAUACAAAAAAAAAAUUAGCCGGGCGUGAUGGCGGGCGCCUGCAGUCCCAGCUAUUCGGGAGGCUGAGGUAGAAUGGCGUGAACCUGGGAGGCGGAGCUUGCGGUGAGCCAAGAUUGUGCCACUGCUCUCCAGCCUGGGCGACAGAGUGAGACUCCGUCUCAAAAAAAAAAGAA
Sequence (MODOMICS CODE ENCODING) GGGGCGGGGCUGGGCUCCCGGGGUAGGUCCGCGGCUGCUGCUGCGUCCGACCCCCGGCCGGCGCGGGUAUGGAGCUUGGGGGUCACUGGGACAUGAACUCGGCCCCGAGGCUGGUCUCGGAGACCGCAGAGCGGAAACAGGAGCAGAAGACAGGAACCGAGGCGGAGGCUGCCGACUCCGGUGCCGUCGGAGCCCGCCGCUUCCUGCUCUGUCUCUACUUGGUGGGCUUCUUGGAUUUGUUUGGUGUCAGCAUGGUUGUGCCUUUAUUGAGCCUUCAUGUCAAGUCCCUUGGAGCAAGUCCAACAGUUGCUGGAAUAGUAGACGACGUAUGUUCAAAGAGAUUUUGAGAUUUGAGCACUAUAACCAAGUCCCAUGCCACUAGUGGCAACAGGUACUUAUGGAGCCUCUGCAAGGAGCUGGCUGUGUGUAUAAAAGGGCUCCUCCUAUGGCAUUUUGCAACUCUUUUCUAGCACAUUGGUGGGCUGCUGGAGCGAUGUAGUGGGAAGACGGUCUUCCUUGCUGGCAUGCAUUCUACUCAGUGCUCUGGGCUAUCUCCUUCUCGGAGCAGCCACCAAUGUGUUUCUGUUUGUCCUGGCUAGAGUCCCGGCAGGUAUUUUUAAACACACUCUCUCCAUCUCAAGGGCUCUACUUUCUGAUGUGGUUCCAGAGAAGGAACGGCCGCUUGUAAUCGGACACUUCAACACAGCCUCCGGUGUGGGCUUCAUCUUGGGCCCCGUGGUCGGUGGCUAUCUCACUGAAUUAGAGGAUGGGUUUUAUCUCACAGCCUUCAUCUGCUUUUUGGUCUUCAUUCUCAAUGCUGGUCUCGUUUGGUUCUUUCCAUGGAGGGAAGCAAAACCGGGCAGUACAGAGAAGGGCCUGCCAUUGCGAAAGACCCAUGUGCUGUUGGGAAGGAGCCAUGACACAGUGCAGGAGGCAGCCACCAGCCGCAGAGCCAGGGCCAGCAAGAAGACUGCCCAGCCCUGGGUCGAAGUAGUGUUGGCCUUGCGGAACAUGAAGAACCUGCUGUUUUCCGAAAUGUGGG2000000006ACAUAUUUCUGGUGCGCUUGCUGAUGGCCAUGGCAGUCAUGCUGUACUACAGUA2000000006ACUUUGUCCUGGCCCUGGAGGAGCGCUUUGGGGUGCGGCCCAAGGUGACAGGCUACCUCAUCAGUUACAGCAGCAUGCUGGGGGCCGUGGCCGGCCUUGCCCUGGGGCCAAUCCUACGGCUGUACAAGCACAACUCGCAGGCACUGCUGCUGCAUUCCAGCAUACUCACCUGCACACUGCUGCUGCUCUACUCCUUGGCCCCCACCAUGGGUGCAGUUGUCCUCUCCUCCACUCUCCUGUCCUUCUCCACUGCCAUUGGCAGGACGUGCAUCACGG2000000006ACCUCCAGCUG2000000006ACUGUGGGCGGGGCCCAGGCCAGCGGCACCCUUAUUGGCGUGGGGCAGUCUGUG2000000006ACUGCAGUGGGCCGCAUCAUCGCCCCUCUCCUCUCGGGGGUUGCCCAGGAGGUCAGCCCUUGCGGCCCCCCCAGCCUGGGCGCUGUGUUAGCCUUAGUGGCCAUUUUCAUAAUGUCUCUAAACAAGCGACACUCUAGUGGUGAUGGGAAUAGUAAAUUAAAAAGUGAGUAGAUGGAUUUGGACAACAUAAAGCAACAAAAUUUGAGAUGGUUGAAUGAGGGCCGGAGGCCAUGAUGAAAAGGGCACUUUGGAAAGGGUUGGGGUGGAAGGGAAAUAUUUCCGGGUGGGUGUGAGCUGUUGGGCUUCCAGGUCAGCUCUUGGCCAUGCAGCCAUGCCUGCAGGAUGAUCAGAAGUCACGGCACCUCAUGGGAAGGUUAAGACUGGAGCAAAGCUUUUCCAAGGUGAGCAUAUUCAGCGUUUACCUGGAAGUCUCUUCUUCCCACCUGGGCUAAUCAGGUUACAAUUUUCAAGGGUAAACAAACUACCAGCUACAGGAUAGGGAAGUGGUGGUGGAAUAAGAGAACAUGAUACCUGGAGGAAGGGAAGAAACCACAAGCAUUUUCCUACUGAAAAAUAGGGUGACAUGUCAGUCAAAUUCUGAUCAACUGGAACUUGAGUUUCCAGUUAAAUUCCAUACACUAGGAGGGAGUUUUCUAUCAAAAUCCUGCAGAUUGAAGAAGCUGGUUUAUUAGAACCAGCCUGUCGCUUUUCAAAGCUGCUUAAAAAUAAGAUACUGACCUCACCCCUAGAGAUGAUUCAGUGGGCCUGGGUGGGGCCAAGAAAUCCGUGGUGUUUUGUAAGCACUGCUGGCGAUUUCUCAUGGCAGUAAAGACCACACUGAGACUGCACUGAUUUUGAUUAAAGUACAUAGGCUUGGCUGUUUUUACACAGCUAACUAAAUUUGGACUCUUAAAAUUGUGUUUGUAAUCACAGUGUGUUACACCUUUCCCAGCUCUCAGCAGUUGUACUGCAUGAUGGAGCAGCGGGCCCCUGGGACCUGUUCCCUGUGCUCCCUGCCUCUGAGAGCCCAGCUUGCUCUGAAGUUGGACUAAACCACUUAGAUGCUGGGGUUGCCACAGCCUGCUCCUGGAAGCCUGCAUUCCAGUCAGGUUGCAUCCUUCUGGUGCUGACAGAACCCAGUGGUGAAGCCAAAGCACAGGAAUGCUUUAAAAAUGAACAGUUUAUGCAGAAUAAGGGUCAGGAGUCAUGCCAGACCAGAACUUGAUGCUACUGUGUCUUGUGUUAAGAAUCAUUUCCUGGCCAGGCUCGGUGGCUCAGGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGGCAGGUGAAUCACUUGGUCAGGAGAUGGAGACCAUUCUGGCUAACAUGGUGAAACCCCGUCUCUACUAAAAAUACAAAAAAAAAAUUAGCCGGGCGUGAUGGCGGGCGCCUGCAGUCCCAGCUAUUCGGGAGGCUGAGGUAGAAUGGCGUGAACCUGGGAGGCGGAGCUUGCGGUGAGCCAAGAUUGUGCCACUGCUCUCCAGCCUGGGCGACAGAGUGAGACUCCGUCUCAAAAAAAAAAGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1043 1097 1373 1384 1438
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 2:102718985:- 2:102718931:- 2:102718655:- 2:102718644:- 2:102718590:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
V5PvfiKsgFMd
VyCX26p5UBRL
WdHxkJGRmFxn
nfCHyrYzE6fB
5FhTyQVy2tKW
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
nfCHyrYzE6fB
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn