Modomics - A Database of RNA Modifications

General Data

RNA Type other
Original Source 1VQ5_C
Sequence (UNICHARACTER ENCODING) DC2OPPO2ACC
Sequence (SHORT NAMES ENCODING) pDC5AAps2Upm1IpYpYpm1Ips2UACC
Sequence (MODOMICS CODE ENCODING) 2000008551UC2000002551U2000019551A2000009551U2000009551U2000019551A2000002551UACC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 0 2 3 4 5 6 7 8
Modification positions pD 5AA ps2U pm1I pY pY pm1I ps2U
Level of Experimental Evidence 5 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS