Modomics - A Database of RNA Modifications

General Data

RNA Type other
Original Source 1VQ7_C
Sequence (UNICHARACTER ENCODING) C2OPPAEACC
Sequence (SHORT NAMES ENCODING) C5AAps2Upm1IpYpYApm6t6AACC
Sequence (MODOMICS CODE ENCODING) C2000002551U2000019551A2000009551U2000009551UA2000662551AACC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 1 2 3 4 5 7
Modification positions 5AA ps2U pm1I pY pY pm6t6A
Level of Experimental Evidence 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS