Modomics - A Database of RNA Modifications

General Data

RNA Type rRNA
SOTerm SO:0001001
Original Source U32322
Sequence (UNICHARACTER ENCODING) ACGACUAGGGGCACCAAGCCAGCCGGUGGAUGGCUCGGCUCGGGCGCUGACGAAGGGCGCGGCAAGUGGCGAAAUGCCCGGGGUAGGCACACGCUGCCUUUGAACCCGGGAUUCCCCGAAUGGGACCUGCCCCUUUGGGGCGCACCCGACUCGNNNAGAGUCGGGUGUGGGAACUCCCCGAACGGAAACAUCUUAGUAGGGGAAGGAGGAGAAAUCAACCGAGAUCCCCUGAGUAGGGGCGACCGAAAGGGGGAUAGCCCAAACCAAACCCGCCGCCGGCAAGUCGGUGGGAAUGUGGUGUUAUUGGCCUCCAGUCUGGUUUAAAGCCGGCCUCCCUGGCCUACCUAGCCGAACUCUCCUGGAAUGGAGGGCCAUAGAGGGUGACAGCCCCGUAGGCUAAAGGUAGGUGGGAGGUGACUGGAGGCAGCGUACCAUCCCCUGGUUCGGGGGUGGGAAGUUGGGGGCCACGUGCCUCCAAGGCUAAAUACGUCCCGAGACCGAUAGCGAACUAAGUACCGUGAGGGAAAGCUGCAAAGACCCCGGAAGGGGGGUGAAAAGAGCCUGAAACCGGCUGGUCAUAGUAGGGCAAGGCUCGAAAGGAGUGAAGUCUCCCGAAGGAAAGAGGCGCNAGCCUAGUACGAGGGAGAUGGACCGGGGUCUUGCCUUUCGUCCUGAAACACGGGCCGGGGAGUUCACGCCAGUGGCGAGCCUAAGGGGGUUAACCCCGAAGGCAUAGGGAAACCGAGUGCCCGCAGCCCGGGAAACCNGGUGAGGGGCAGGGUCUGCCAGGGCCUAAAGUCACUGGCGUGAGGCUAGAAACCGGGCGAUCUAGGCCGGGGCAGGCCGAAGCCGGGGGAAACCUCGGUGGAGGGCCGNNUAGGGGUUCUGACGUGCAAUUCGUUCCCCUGACCCCGGUCUAGGGGCGAAAGACCAAUCUAGCUCGGUGAUAGCUAGUUCCCCCCGAAAUGCGUCCUAGCGCAGCCUUCCUGGAGGUUGCCUACGGGGUAGAGUAACUGAUUGGGGGUUCGGAGCGAAAGCUCCGGGCUUCCAGUCAAACUCCGAACUCGUAGGCGCCGAAGAAGGGGAGAGUGGGCCACUCGGCGUAAGGUUGGGUGGCGAAAGGGAAACAGCCCAGACUUGGGUUAAGGCCCCAAAAUGCCGGCUAAGUGCCAGUUAAGGGGCGUCUCUAGCCUUAGACAGCGGGAAGGUGGGCCCAGCAGCAGCCAUCCUCUAAGGAGUGCGUAACAGCUCACCCGCCGAGGCUAGAGGCCCCGAAGAUUGGUCGGGGCUUAAGCCGGCUGCCGAGACCCAAGCGUGGAGGCUCAUUGAGUCUCCAUGGGUAGGGGGGCGCUGUGGUGGGGUAGAAGGUGGGUCGUGAGAUCCACUGGACCCGCCACAGGUGCAGAUCCCGGCGGCAGUAACAGCGAGGAGGGGUAAGACUCCCCUCCGCCGGAAGGGCUAGGGUUUCCCGGCAAUGGUCGUCAGCCGGGAGUGAGCCGGUCCUAAGGCGAGGCCUAAUAGGUACUCGCCGAAAGGGAAGUGGGUUAAUAUUCCCACGCCCUAGGGGUAGGCGCGGUAACGCAAGCUGGACUCCUGACGGAUCUGGGUAGGGUGAGUGGGGCCACCGCCCCAUCCAAGCGCUUAAGUCCCUGGAGUGCCGUAAUGGUGAGAAGGGGACGAAGGCGUGAUGGGNGUUCCCUUUGGGGACUUCACCCAAUCCCAGGUUCCCUUGAAAAGGGAGUCCAGAACGAUCCCCUAGGACCGUACCGAGAACCGACACUGGUGCCCCUGGGUGAGAAGCCCAAGGCGUCUGGGGGUUAACUCAGGCUAGGGAACUCGGCAAAAUAGCCCCGUACCUUCGGUAGAAGGGGUGCCUACUGGGGUCGUAAACCGGCCUCAGUAGGUCGCAGUGACAAGGGGGACCUGACUGUUUAAUAAAAACAUAGGUCCCCGCUAGCCCGAAAGGGUGUGUACGGGGGCUAAAUCCUGGCCACUGGUGGAUGGUGAAAGCCGGGUCCAACCGGUCGAAGCCCCACUGAAGGCCGGGGGUAACUCUGACCCUCUUAAGGUAGCCAAAUGCCUUGCCGGGUAAGUUCCGGCGCGCAUGAAUGGAUCAACGUGGUCCCUACUGUCCCAGCCUGGGGCCCCGUGAACGCCCAGAGUGGGUUCACAGUCCCGCAACUCCCCACACCGAGAGAAGACCCCGUGGAGCUUCACCGCAGCCUGGCGCUGCUCCUCGGGCGCCUAUGCGUAGAGUAGGUGGGAGGGGUCGAACCCAUCCUUUCGGGGAUGGGGGACCCGAAGGUGAAACACCACCCAUGGGUGCUCGAGGAGCUUACCUGCCCNNNNGGGUGGGGACAGCGUCAGGUGGGCGGUUCGGCUGGGGCGGCACUCCCGCGAAAAGAUAACACGGGAGCCCAAAGGUCGGCUCAGGCGGUACAGAACGCCGCCGUGGAGUGCAAGGGCAAAAGCCGGCUUGACGAGACCCUCCAAAGUACGGGGUCUCGACGCGAAAGCGCGGCCUAGCGAACGCUCGUGCCCCCCCACGUGGGGGCCGGGCAUGACAGAAAAGUUACCCCGGGGAUAACAGGGUCGUCGCGGGCGAGAGCUCCCAUCGACCCCGCGGUUUGCUACAUCGAUGUCGGCUCUUCCCACCCUGGGGGUGCAGCUGCCCCCAAGGGUAGGGCUGCCCGCCCGUUAAAGGGGAACGUGAGCUGGGUUUAGACCGUCGCGAGACGGGUCGGACUCUAAGGGUGGGGAGUGUGGGCUGCCUGAGGGGAAGGUACCCCAAGUACGAGAGGAACAGGGUACCGGGGCCUCUAGUUUACCGGUUGUCCGGUAGGGCACUGCCGGGCAGCCACGCCCUGUGGGGUAACCGCUGAAAGCAUCUAAGCGGGAACCCCUCCCCGAAAAGAGGCAGCCAUGCGGGGUUAACCCGCGAGAGCCCACCUCUAGAAGAGGGGGUUGAUGGGNNCGGGGUGUAAGUCCCGAGGGCGAAAGUCCGAGGGAUUUAGCCCGCGCCUCCCAAUCGGGCAAGCCCUCUU
Sequence (SHORT NAMES ENCODING) ACGACUAGGGGCACCAAGCCAGCCGGUGGAUGGCUCGGCUCGGGCGCUGACGAAGGGCGCGGCAAGUGGCGAAAUGCCCGGGGUAGGCACACGCUGCCUUUGAACCCGGGAUUCCCCGAAUGGGACCUGCCCCUUUGGGGCGCACCCGACUCGxUxUxUAGAGUCGGGUGUGGGAACUCCCCGAACGGAAACAUCUUAGUAGGGGAAGGAGGAGAAAUCAACCGAGAUCCCCUGAGUAGGGGCGACCGAAAGGGGGAUAGCCCAAACCAAACCCGCCGCCGGCAAGUCGGUGGGAAUGUGGUGUUAUUGGCCUCCAGUCUGGUUUAAAGCCGGCCUCCCUGGCCUACCUAGCCGAACUCUCCUGGAAUGGAGGGCCAUAGAGGGUGACAGCCCCGUAGGCUAAAGGUAGGUGGGAGGUGACUGGAGGCAGCGUACCAUCCCCUGGUUCGGGGGUGGGAAGUUGGGGGCCACGUGCCUCCAAGGCUAAAUACGUCCCGAGACCGAUAGCGAACUAAGUACCGUGAGGGAAAGCUGCAAAGACCCCGGAAGGGGGGUGAAAAGAGCCUGAAACCGGCUGGUCAUAGUAGGGCAAGGCUCGAAAGGAGUGAAGUCUCCCGAAGGAAAGAGGCGCxUAGCCUAGUACGAGGGAGAUGGACCGGGGUCUUGCCUUUCGUCCUGAAACACGGGCCGGGGAGUUCACGCCAGUGGCGAGCCUAAGGGGGUUAACCCCGAAGGCAUAGGGAAACCGAGUGCCCGCAGCCCGGGAAACCxUGGUGAGGGGCAGGGUCUGCCAGGGCCUAAAGUCACUGGCGUGAGGCUAGAAACCGGGCGAUCUAGGCCGGGGCAGGCCGAAGCCGGGGGAAACCUCGGUGGAGGGCCGxUxUUAGGGGUUCUGACGUGCAAUUCGUUCCCCUGACCCCGGUCUAGGGGCGAAAGACCAAUCUAGCUCGGUGAUAGCUAGUUCCCCCCGAAAUGCGUCCUAGCGCAGCCUUCCUGGAGGUUGCCUACGGGGUAGAGUAACUGAUUGGGGGUUCGGAGCGAAAGCUCCGGGCUUCCAGUCAAACUCCGAACUCGUAGGCGCCGAAGAAGGGGAGAGUGGGCCACUCGGCGUAAGGUUGGGUGGCGAAAGGGAAACAGCCCAGACUUGGGUUAAGGCCCCAAAAUGCCGGCUAAGUGCCAGUUAAGGGGCGUCUCUAGCCUUAGACAGCGGGAAGGUGGGCCCAGCAGCAGCCAUCCUCUAAGGAGUGCGUAACAGCUCACCCGCCGAGGCUAGAGGCCCCGAAGAUUGGUCGGGGCUUAAGCCGGCUGCCGAGACCCAAGCGUGGAGGCUCAUUGAGUCUCCAUGGGUAGGGGGGCGCUGUGGUGGGGUAGAAGGUGGGUCGUGAGAUCCACUGGACCCGCCACAGGUGCAGAUCCCGGCGGCAGUAACAGCGAGGAGGGGUAAGACUCCCCUCCGCCGGAAGGGCUAGGGUUUCCCGGCAAUGGUCGUCAGCCGGGAGUGAGCCGGUCCUAAGGCGAGGCCUAAUAGGUACUCGCCGAAAGGGAAGUGGGUUAAUAUUCCCACGCCCUAGGGGUAGGCGCGGUAACGCAAGCUGGACUCCUGACGGAUCUGGGUAGGGUGAGUGGGGCCACCGCCCCAUCCAAGCGCUUAAGUCCCUGGAGUGCCGUAAUGGUGAGAAGGGGACGAAGGCGUGAUGGGxUGUUCCCUUUGGGGACUUCACCCAAUCCCAGGUUCCCUUGAAAAGGGAGUCCAGAACGAUCCCCUAGGACCGUACCGAGAACCGACACUGGUGCCCCUGGGUGAGAAGCCCAAGGCGUCUGGGGGUUAACUCAGGCUAGGGAACUCGGCAAAAUAGCCCCGUACCUUCGGUAGAAGGGGUGCCUACUGGGGUCGUAAACCGGCCUCAGUAGGUCGCAGUGACAAGGGGGACCUGACUGUUUAAUAAAAACAUAGGUCCCCGCUAGCCCGAAAGGGUGUGUACGGGGGCUAAAUCCUGGCCACUGGUGGAUGGUGAAAGCCGGGUCCAACCGGUCGAAGCCCCACUGAAGGCCGGGGGUAACUCUGACCCUCUUAAGGUAGCCAAAUGCCUUGCCGGGUAAGUUCCGGCGCGCAUGAAUGGAUCAACGUGGUCCCUACUGUCCCAGCCUGGGGCCCCGUGAACGCCCAGAGUGGGUUCACAGUCCCGCAACUCCCCACACCGAGAGAAGACCCCGUGGAGCUUCACCGCAGCCUGGCGCUGCUCCUCGGGCGCCUAUGCGUAGAGUAGGUGGGAGGGGUCGAACCCAUCCUUUCGGGGAUGGGGGACCCGAAGGUGAAACACCACCCAUGGGUGCUCGAGGAGCUUACCUGCCCxUxUxUxUGGGUGGGGACAGCGUCAGGUGGGCGGUUCGGCUGGGGCGGCACUCCCGCGAAAAGAUAACACGGGAGCCCAAAGGUCGGCUCAGGCGGUACAGAACGCCGCCGUGGAGUGCAAGGGCAAAAGCCGGCUUGACGAGACCCUCCAAAGUACGGGGUCUCGACGCGAAAGCGCGGCCUAGCGAACGCUCGUGCCCCCCCACGUGGGGGCCGGGCAUGACAGAAAAGUUACCCCGGGGAUAACAGGGUCGUCGCGGGCGAGAGCUCCCAUCGACCCCGCGGUUUGCUACAUCGAUGUCGGCUCUUCCCACCCUGGGGGUGCAGCUGCCCCCAAGGGUAGGGCUGCCCGCCCGUUAAAGGGGAACGUGAGCUGGGUUUAGACCGUCGCGAGACGGGUCGGACUCUAAGGGUGGGGAGUGUGGGCUGCCUGAGGGGAAGGUACCCCAAGUACGAGAGGAACAGGGUACCGGGGCCUCUAGUUUACCGGUUGUCCGGUAGGGCACUGCCGGGCAGCCACGCCCUGUGGGGUAACCGCUGAAAGCAUCUAAGCGGGAACCCCUCCCCGAAAAGAGGCAGCCAUGCGGGGUUAACCCGCGAGAGCCCACCUCUAGAAGAGGGGGUUGAUGGGxUxUCGGGGUGUAAGUCCCGAGGGCGAAAGUCCGAGGGAUUUAGCCCGCGCCUCCCAAUCGGGCAAGCCCUCUU
Sequence (MODOMICS CODE ENCODING) ACGACUAGGGGCACCAAGCCAGCCGGUGGAUGGCUCGGCUCGGGCGCUGACGAAGGGCGCGGCAAGUGGCGAAAUGCCCGGGGUAGGCACACGCUGCCUUUGAACCCGGGAUUCCCCGAAUGGGACCUGCCCCUUUGGGGCGCACCCGACUCG2000000999U2000000999U2000000999UAGAGUCGGGUGUGGGAACUCCCCGAACGGAAACAUCUUAGUAGGGGAAGGAGGAGAAAUCAACCGAGAUCCCCUGAGUAGGGGCGACCGAAAGGGGGAUAGCCCAAACCAAACCCGCCGCCGGCAAGUCGGUGGGAAUGUGGUGUUAUUGGCCUCCAGUCUGGUUUAAAGCCGGCCUCCCUGGCCUACCUAGCCGAACUCUCCUGGAAUGGAGGGCCAUAGAGGGUGACAGCCCCGUAGGCUAAAGGUAGGUGGGAGGUGACUGGAGGCAGCGUACCAUCCCCUGGUUCGGGGGUGGGAAGUUGGGGGCCACGUGCCUCCAAGGCUAAAUACGUCCCGAGACCGAUAGCGAACUAAGUACCGUGAGGGAAAGCUGCAAAGACCCCGGAAGGGGGGUGAAAAGAGCCUGAAACCGGCUGGUCAUAGUAGGGCAAGGCUCGAAAGGAGUGAAGUCUCCCGAAGGAAAGAGGCGC2000000999UAGCCUAGUACGAGGGAGAUGGACCGGGGUCUUGCCUUUCGUCCUGAAACACGGGCCGGGGAGUUCACGCCAGUGGCGAGCCUAAGGGGGUUAACCCCGAAGGCAUAGGGAAACCGAGUGCCCGCAGCCCGGGAAACC2000000999UGGUGAGGGGCAGGGUCUGCCAGGGCCUAAAGUCACUGGCGUGAGGCUAGAAACCGGGCGAUCUAGGCCGGGGCAGGCCGAAGCCGGGGGAAACCUCGGUGGAGGGCCG2000000999U2000000999UUAGGGGUUCUGACGUGCAAUUCGUUCCCCUGACCCCGGUCUAGGGGCGAAAGACCAAUCUAGCUCGGUGAUAGCUAGUUCCCCCCGAAAUGCGUCCUAGCGCAGCCUUCCUGGAGGUUGCCUACGGGGUAGAGUAACUGAUUGGGGGUUCGGAGCGAAAGCUCCGGGCUUCCAGUCAAACUCCGAACUCGUAGGCGCCGAAGAAGGGGAGAGUGGGCCACUCGGCGUAAGGUUGGGUGGCGAAAGGGAAACAGCCCAGACUUGGGUUAAGGCCCCAAAAUGCCGGCUAAGUGCCAGUUAAGGGGCGUCUCUAGCCUUAGACAGCGGGAAGGUGGGCCCAGCAGCAGCCAUCCUCUAAGGAGUGCGUAACAGCUCACCCGCCGAGGCUAGAGGCCCCGAAGAUUGGUCGGGGCUUAAGCCGGCUGCCGAGACCCAAGCGUGGAGGCUCAUUGAGUCUCCAUGGGUAGGGGGGCGCUGUGGUGGGGUAGAAGGUGGGUCGUGAGAUCCACUGGACCCGCCACAGGUGCAGAUCCCGGCGGCAGUAACAGCGAGGAGGGGUAAGACUCCCCUCCGCCGGAAGGGCUAGGGUUUCCCGGCAAUGGUCGUCAGCCGGGAGUGAGCCGGUCCUAAGGCGAGGCCUAAUAGGUACUCGCCGAAAGGGAAGUGGGUUAAUAUUCCCACGCCCUAGGGGUAGGCGCGGUAACGCAAGCUGGACUCCUGACGGAUCUGGGUAGGGUGAGUGGGGCCACCGCCCCAUCCAAGCGCUUAAGUCCCUGGAGUGCCGUAAUGGUGAGAAGGGGACGAAGGCGUGAUGGG2000000999UGUUCCCUUUGGGGACUUCACCCAAUCCCAGGUUCCCUUGAAAAGGGAGUCCAGAACGAUCCCCUAGGACCGUACCGAGAACCGACACUGGUGCCCCUGGGUGAGAAGCCCAAGGCGUCUGGGGGUUAACUCAGGCUAGGGAACUCGGCAAAAUAGCCCCGUACCUUCGGUAGAAGGGGUGCCUACUGGGGUCGUAAACCGGCCUCAGUAGGUCGCAGUGACAAGGGGGACCUGACUGUUUAAUAAAAACAUAGGUCCCCGCUAGCCCGAAAGGGUGUGUACGGGGGCUAAAUCCUGGCCACUGGUGGAUGGUGAAAGCCGGGUCCAACCGGUCGAAGCCCCACUGAAGGCCGGGGGUAACUCUGACCCUCUUAAGGUAGCCAAAUGCCUUGCCGGGUAAGUUCCGGCGCGCAUGAAUGGAUCAACGUGGUCCCUACUGUCCCAGCCUGGGGCCCCGUGAACGCCCAGAGUGGGUUCACAGUCCCGCAACUCCCCACACCGAGAGAAGACCCCGUGGAGCUUCACCGCAGCCUGGCGCUGCUCCUCGGGCGCCUAUGCGUAGAGUAGGUGGGAGGGGUCGAACCCAUCCUUUCGGGGAUGGGGGACCCGAAGGUGAAACACCACCCAUGGGUGCUCGAGGAGCUUACCUGCCC2000000999U2000000999U2000000999U2000000999UGGGUGGGGACAGCGUCAGGUGGGCGGUUCGGCUGGGGCGGCACUCCCGCGAAAAGAUAACACGGGAGCCCAAAGGUCGGCUCAGGCGGUACAGAACGCCGCCGUGGAGUGCAAGGGCAAAAGCCGGCUUGACGAGACCCUCCAAAGUACGGGGUCUCGACGCGAAAGCGCGGCCUAGCGAACGCUCGUGCCCCCCCACGUGGGGGCCGGGCAUGACAGAAAAGUUACCCCGGGGAUAACAGGGUCGUCGCGGGCGAGAGCUCCCAUCGACCCCGCGGUUUGCUACAUCGAUGUCGGCUCUUCCCACCCUGGGGGUGCAGCUGCCCCCAAGGGUAGGGCUGCCCGCCCGUUAAAGGGGAACGUGAGCUGGGUUUAGACCGUCGCGAGACGGGUCGGACUCUAAGGGUGGGGAGUGUGGGCUGCCUGAGGGGAAGGUACCCCAAGUACGAGAGGAACAGGGUACCGGGGCCUCUAGUUUACCGGUUGUCCGGUAGGGCACUGCCGGGCAGCCACGCCCUGUGGGGUAACCGCUGAAAGCAUCUAAGCGGGAACCCCUCCCCGAAAAGAGGCAGCCAUGCGGGGUUAACCCGCGAGAGCCCACCUCUAGAAGAGGGGGUUGAUGGG2000000999U2000000999UCGGGGUGUAAGUCCCGAGGGCGAAAGUCCGAGGGAUUUAGCCCGCGCCUCCCAAUCGGGCAAGCCCUCUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment 192 193 194 763 938 1052 1053 2166 3489 3490 3491 3492 4165 4166
Position in the sequence 154 155 156 629 767 876 877 1693 2346 2347 2348 2349 2973 2974
Modification positions xU xU xU xU xU xU xU xU xU xU xU xU xU xU
Level of Experimental Evidence 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS