Modomics - A Database of RNA Modifications

General Data

RNA Type snRNA
SOTerm SO:0000395
Original Source None
Sequence (UNICHARACTER ENCODING) ʍBACGCGGCUUPCPCGGCAGAUCGAAUUAPUCUPJC#CCUJUPABPAAAGAAUACCGUGUCGGGGAUGCAUAUUUGCGUCUUUUGAUCGAAUUUUUUGCGGCCUCUCUUUACGAGUGGCUAU
Sequence (SHORT NAMES ENCODING) m2,2,7GpppNpAmpCmACGCGGCUUpYCpYCGGCAGAUCGAAUUApYUCUpYpUmCpGmCCUpUmUpYApCmpYAAAGAAUACCGUGUCGGGGAUGCAUAUUUGCGUCUUUUGAUCGAAUUUUUUGCGGCCUCUCUUUACGAGUGGCUAU
Sequence (MODOMICS CODE ENCODING) 2002279553N2000090551A2000090551CACGCGGCUU2000009551UC2000009551UCGGCAGAUCGAAUUA2000009551UUCU2000009551U2000090551UC2000090551GCCU2000090551UU2000009551UA2000090551C2000009551UAAAGAAUACCGUGUCGGGGAUGCAUAUUUGCGUCUUUUGAUCGAAUUUUUUGCGGCCUCUCUUUACGAGUGGCUAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment None 1 None 9 None 18 None 20 None 39 None 43 None 44 None 46 None 50 None 52 None 54 None 55 None
Position in the sequence 0 1 1 2 2 12 12 14 14 30 30 34 34 35 35 37 37 41 41 43 43 45 45 46 46
Modification positions m2,2,7GpppN pAm pAm pCm pCm pY pY pY pY pY pY pY pY pUm pUm pGm pGm pUm pUm pY pY pCm pCm pY pY
Level of Experimental Evidence 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5
Level of Experimental Reliability 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS