General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000486110
Gene ID:	ENSG00000197568
Gene Name:	HHLA3
Sequence (UNICHARACTER ENCODING)	ACCUUCUAUUCCCAGAAUCACUAGGCGCCGGCGCCUCCGAGGCAGUGUGUUUCCGCCCAGAGCUGGAGUCUCCCAGCUGCCAGCCGACCCCGAACCCGCACUCCCGCCAACCGCGCUUUUUGUGGGCGGUCGGAAACCACAGCCUCCGUUGGAUAUGUUCGGUGCAUGUUAUAAЖCAACCACUUAAACCCUCCGGAUCUGAGCCUCCCGCAGAGGAAUGCAGAAUGACGCCACGGCACGCAGGAUGUGAUGUCACCGAGAUGCAGAGGAUACUCAGUCAACCAACAUUUACUGAGCAUCUACUUCGUGCCGUAUGUACGAAGCUAGCAAAUAUGUACAGCACCAGUACUGAUUGCAGGGAGCACUGUAGAAGAGGAAUGAAGGCCAAACAAUUAAAAGCGGAGGCGGGGAGAUUGACUCUUUUCGCCGACACCUUGUAUUUCGUCUGGCAACCUUACUCACCCCUCAACCAUUUGUUUGAGUUGUUUAGAGUUAUGGAUAUAGUUAAAGUACGAAGCCAAAUGUGUGGGAAUAAUAACGCCAAAUUCAAGAUAGUGGUUUCAAUGGAGCACGAAGGAGAAAAACACCAUCAGGGGUCUUGUCAACGGAAAGGGGUCCCUAUCCAGACCCCAAGAGAGCAUUCUUGGAUCUCUUGCAAGAAAGAAUUUGAGGCGAAUCCAUAGAGUAAGCUUAGUGAUGUGUGUCAGACCUCUGAGCCCAAGCAAAGCCAUCAUAUCCCCUGUGACCUGCAUGUAUACAPCCAGAUGGCCUGAAGCAAGUGAAGAAUCACAAAAGAAGUGAAAAGGGCCGGUUCCUGCCUUAACUGAUGACAUUCCACCAUUGUGAUUUGUUCCUGCCCCACCUUAACUGAGCGAUUAACCUGUGAЖCUUCCUUCUCCUGGCUCAGAAGCUUCCCCACUGAGCACCUUGUGACCCCCGCCCCUGCCUGCCAUAGAACAACCCCCUUUGAUUGUAAUUUUCCUPUACCUACCCAAAUCCUAUAAAACGGCCCCACCCCUAUCUCCCUUCGCUGACACUCUCUUUGGACUCAGCCUGCCUGCACCUAGGUGAUUAAAAAGCUPUAUUGCUCACGCAAA
Sequence (SHORT NAMES ENCODING)	ACCUUCUAUUCCCAGAAUCACUAGGCGCCGGCGCCUCCGAGGCAGUGUGUUUCCGCCCAGAGCUGGAGUCUCCCAGCUGCCAGCCGACCCCGAACCCGCACUCCCGCCAACCGCGCUUUUUGUGGGCGGUCGGAAACCACAGCCUCCGUUGGAUAUGUUCGGUGCAUGUUAUAAm6ACAACCACUUAAACCCUCCGGAUCUGAGCCUCCCGCAGAGGAAUGCAGAAUGACGCCACGGCACGCAGGAUGUGAUGUCACCGAGAUGCAGAGGAUACUCAGUCAACCAACAUUUACUGAGCAUCUACUUCGUGCCGUAUGUACGAAGCUAGCAAAUAUGUACAGCACCAGUACUGAUUGCAGGGAGCACUGUAGAAGAGGAAUGAAGGCCAAACAAUUAAAAGCGGAGGCGGGGAGAUUGACUCUUUUCGCCGACACCUUGUAUUUCGUCUGGCAACCUUACUCACCCCUCAACCAUUUGUUUGAGUUGUUUAGAGUUAUGGAUAUAGUUAAAGUACGAAGCCAAAUGUGUGGGAAUAAUAACGCCAAAUUCAAGAUAGUGGUUUCAAUGGAGCACGAAGGAGAAAAACACCAUCAGGGGUCUUGUCAACGGAAAGGGGUCCCUAUCCAGACCCCAAGAGAGCAUUCUUGGAUCUCUUGCAAGAAAGAAUUUGAGGCGAAUCCAUAGAGUAAGCUUAGUGAUGUGUGUCAGACCUCUGAGCCCAAGCAAAGCCAUCAUAUCCCCUGUGACCUGCAUGUAUACAYCCAGAUGGCCUGAAGCAAGUGAAGAAUCACAAAAGAAGUGAAAAGGGCCGGUUCCUGCCUUAACUGAUGACAUUCCACCAUUGUGAUUUGUUCCUGCCCCACCUUAACUGAGCGAUUAACCUGUGAm6ACUUCCUUCUCCUGGCUCAGAAGCUUCCCCACUGAGCACCUUGUGACCCCCGCCCCUGCCUGCCAUAGAACAACCCCCUUUGAUUGUAAUUUUCCUYUACCUACCCAAAUCCUAUAAAACGGCCCCACCCCUAUCUCCCUUCGCUGACACUCUCUUUGGACUCAGCCUGCCUGCACCUAGGUGAUUAAAAAGCUYUAUUGCUCACGCAAA
Sequence (MODOMICS CODE ENCODING)	ACCUUCUAUUCCCAGAAUCACUAGGCGCCGGCGCCUCCGAGGCAGUGUGUUUCCGCCCAGAGCUGGAGUCUCCCAGCUGCCAGCCGACCCCGAACCCGCACUCCCGCCAACCGCGCUUUUUGUGGGCGGUCGGAAACCACAGCCUCCGUUGGAUAUGUUCGGUGCAUGUUAUAA2000000006ACAACCACUUAAACCCUCCGGAUCUGAGCCUCCCGCAGAGGAAUGCAGAAUGACGCCACGGCACGCAGGAUGUGAUGUCACCGAGAUGCAGAGGAUACUCAGUCAACCAACAUUUACUGAGCAUCUACUUCGUGCCGUAUGUACGAAGCUAGCAAAUAUGUACAGCACCAGUACUGAUUGCAGGGAGCACUGUAGAAGAGGAAUGAAGGCCAAACAAUUAAAAGCGGAGGCGGGGAGAUUGACUCUUUUCGCCGACACCUUGUAUUUCGUCUGGCAACCUUACUCACCCCUCAACCAUUUGUUUGAGUUGUUUAGAGUUAUGGAUAUAGUUAAAGUACGAAGCCAAAUGUGUGGGAAUAAUAACGCCAAAUUCAAGAUAGUGGUUUCAAUGGAGCACGAAGGAGAAAAACACCAUCAGGGGUCUUGUCAACGGAAAGGGGUCCCUAUCCAGACCCCAAGAGAGCAUUCUUGGAUCUCUUGCAAGAAAGAAUUUGAGGCGAAUCCAUAGAGUAAGCUUAGUGAUGUGUGUCAGACCUCUGAGCCCAAGCAAAGCCAUCAUAUCCCCUGUGACCUGCAUGUAUACA2000000009UCCAGAUGGCCUGAAGCAAGUGAAGAAUCACAAAAGAAGUGAAAAGGGCCGGUUCCUGCCUUAACUGAUGACAUUCCACCAUUGUGAUUUGUUCCUGCCCCACCUUAACUGAGCGAUUAACCUGUGA2000000006ACUUCCUUCUCCUGGCUCAGAAGCUUCCCCACUGAGCACCUUGUGACCCCCGCCCCUGCCUGCCAUAGAACAACCCCCUUUGAUUGUAAUUUUCCU2000000009UUACCUACCCAAAUCCUAUAAAACGGCCCCACCCCUAUCUCCCUUCGCUGACACUCUCUUUGGACUCAGCCUGCCUGCACCUAGGUGAUUAAAAAGCU2000000009UUAUUGCUCACGCAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	175	759	886	982	1080
Modification Positions	m6A	Y	m6A	Y	Y
Genomic Coordinates	1:70354972:+	1:70367687:+	1:70367814:+	1:70367910:+	1:70368008:+
Level of Experimental Evidence	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8