Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000452259
Gene ID: ENSG00000142945
Gene Name: KIF2C
Sequence (UNICHARACTER ENCODING) ACGCUUGCGCGCGGGAUUUAAACUGCGGCGGUUUACGCGGCGUUAAGACUUCGUAGGGUUAGCGAAAUUGAGGUUUCUUGGUAUUGCGCGUUUCUCUUCCUUGCUGACUCUCCGAAUGGCCAUGGACUCGUCGCUUCAGGCCCGCCUGUUUCCCGGUCUCGCUAUCAAGAUCCAACGCAGUAAUGGUUUAAUUCACAGUGCCAAUGUAAGGACUGUGAACUUGGAGAAAUCCUGUGUUUCAGUGGAAUGGGCAGAAGGAGGUGCCACAAAGGGCAAAGAGAUUGAUUUUGAUGAUGUGGCUGCAAUAAACCCAGAACUCUUACAGCUUCUUCCCUUACAPCCGAAGGACAAUCUGCCCUUGCAGGAAAAUGUAACAAUCCAGAAACAAAAACGGAGAUCCGUCAACUCCAAAAUUCCUGCUCCAAAAGAAAGUCUUCGAAGCCGCUCCACUCGCAUGUCCACUGUCUCAGAGCUUCGCAUCACGGCUCAGGAGAAUGACAUGGAGGUGGAGCUGCCUGCAGCUGCAAACUCCCGCAAGCAGUUUUCAGUUCCUCUUCGGAGGAAAUCAUGUCUUGUGAAGGAAGUGGAAAAAAUGAAGAACAAGCGAGAAGAGAAGAAGGCCCAGAACUCUGAAAUGAGAAUGAAGAGAGCUCAGGAGUAUGACAGUAGUUUUCCAAACUGGGAAUUUGCCCGAAUGAUUAAAGAAUUUCGGGCUACUUUGGAAUGUCAPCCACUUACUAUGACUGAUCCUAUCGAAGAGCACAGAAUAUGUGUCUGUGUUAGGAAACGCCCACUGAAUAAGCAAGAAUUGGCCAAGAAAGAAAUUGAUGUGAUUUCCAUUCCUAGCAAGUGUCUCCUCUUGGUACAUGAACCCAAGUUGAAAGUGGACUUAACAAAGUAUCUGGAGAACCAAGCAUUCUGCUUUGACUUUGCAUUUGAUGAAACAGCUUCGAAUGAAGUUGUCUACAGGUUCACAGCAAGGCCACUGGUACAGACAAUCUUUGAAGGUGGAAAAGCAACUUGUUUUGCAUAUGGCCAGACAGGAAGUGGCAAGACACAUЖCUAUGGGCGGAGЖCCUCUCUGGGAAAGCCCAGAAUGCAPCCAAAGGGAUCUAUGCCAUGGCCU
Sequence (SHORT NAMES ENCODING) ACGCUUGCGCGCGGGAUUUAAACUGCGGCGGUUUACGCGGCGUUAAGACUUCGUAGGGUUAGCGAAAUUGAGGUUUCUUGGUAUUGCGCGUUUCUCUUCCUUGCUGACUCUCCGAAUGGCCAUGGACUCGUCGCUUCAGGCCCGCCUGUUUCCCGGUCUCGCUAUCAAGAUCCAACGCAGUAAUGGUUUAAUUCACAGUGCCAAUGUAAGGACUGUGAACUUGGAGAAAUCCUGUGUUUCAGUGGAAUGGGCAGAAGGAGGUGCCACAAAGGGCAAAGAGAUUGAUUUUGAUGAUGUGGCUGCAAUAAACCCAGAACUCUUACAGCUUCUUCCCUUACAYCCGAAGGACAAUCUGCCCUUGCAGGAAAAUGUAACAAUCCAGAAACAAAAACGGAGAUCCGUCAACUCCAAAAUUCCUGCUCCAAAAGAAAGUCUUCGAAGCCGCUCCACUCGCAUGUCCACUGUCUCAGAGCUUCGCAUCACGGCUCAGGAGAAUGACAUGGAGGUGGAGCUGCCUGCAGCUGCAAACUCCCGCAAGCAGUUUUCAGUUCCUCUUCGGAGGAAAUCAUGUCUUGUGAAGGAAGUGGAAAAAAUGAAGAACAAGCGAGAAGAGAAGAAGGCCCAGAACUCUGAAAUGAGAAUGAAGAGAGCUCAGGAGUAUGACAGUAGUUUUCCAAACUGGGAAUUUGCCCGAAUGAUUAAAGAAUUUCGGGCUACUUUGGAAUGUCAYCCACUUACUAUGACUGAUCCUAUCGAAGAGCACAGAAUAUGUGUCUGUGUUAGGAAACGCCCACUGAAUAAGCAAGAAUUGGCCAAGAAAGAAAUUGAUGUGAUUUCCAUUCCUAGCAAGUGUCUCCUCUUGGUACAUGAACCCAAGUUGAAAGUGGACUUAACAAAGUAUCUGGAGAACCAAGCAUUCUGCUUUGACUUUGCAUUUGAUGAAACAGCUUCGAAUGAAGUUGUCUACAGGUUCACAGCAAGGCCACUGGUACAGACAAUCUUUGAAGGUGGAAAAGCAACUUGUUUUGCAUAUGGCCAGACAGGAAGUGGCAAGACACAUm6ACUAUGGGCGGAGm6ACCUCUCUGGGAAAGCCCAGAAUGCAYCCAAAGGGAUCUAUGCCAUGGCCU
Sequence (MODOMICS CODE ENCODING) ACGCUUGCGCGCGGGAUUUAAACUGCGGCGGUUUACGCGGCGUUAAGACUUCGUAGGGUUAGCGAAAUUGAGGUUUCUUGGUAUUGCGCGUUUCUCUUCCUUGCUGACUCUCCGAAUGGCCAUGGACUCGUCGCUUCAGGCCCGCCUGUUUCCCGGUCUCGCUAUCAAGAUCCAACGCAGUAAUGGUUUAAUUCACAGUGCCAAUGUAAGGACUGUGAACUUGGAGAAAUCCUGUGUUUCAGUGGAAUGGGCAGAAGGAGGUGCCACAAAGGGCAAAGAGAUUGAUUUUGAUGAUGUGGCUGCAAUAAACCCAGAACUCUUACAGCUUCUUCCCUUACA2000000009UCCGAAGGACAAUCUGCCCUUGCAGGAAAAUGUAACAAUCCAGAAACAAAAACGGAGAUCCGUCAACUCCAAAAUUCCUGCUCCAAAAGAAAGUCUUCGAAGCCGCUCCACUCGCAUGUCCACUGUCUCAGAGCUUCGCAUCACGGCUCAGGAGAAUGACAUGGAGGUGGAGCUGCCUGCAGCUGCAAACUCCCGCAAGCAGUUUUCAGUUCCUCUUCGGAGGAAAUCAUGUCUUGUGAAGGAAGUGGAAAAAAUGAAGAACAAGCGAGAAGAGAAGAAGGCCCAGAACUCUGAAAUGAGAAUGAAGAGAGCUCAGGAGUAUGACAGUAGUUUUCCAAACUGGGAAUUUGCCCGAAUGAUUAAAGAAUUUCGGGCUACUUUGGAAUGUCA2000000009UCCACUUACUAUGACUGAUCCUAUCGAAGAGCACAGAAUAUGUGUCUGUGUUAGGAAACGCCCACUGAAUAAGCAAGAAUUGGCCAAGAAAGAAAUUGAUGUGAUUUCCAUUCCUAGCAAGUGUCUCCUCUUGGUACAUGAACCCAAGUUGAAAGUGGACUUAACAAAGUAUCUGGAGAACCAAGCAUUCUGCUUUGACUUUGCAUUUGAUGAAACAGCUUCGAAUGAAGUUGUCUACAGGUUCACAGCAAGGCCACUGGUACAGACAAUCUUUGAAGGUGGAAAAGCAACUUGUUUUGCAUAUGGCCAGACAGGAAGUGGCAAGACACAU2000000006ACUAUGGGCGGAG2000000006ACCUCUCUGGGAAAGCCCAGAAUGCA2000000009UCCAAAGGGAUCUAUGCCAUGGCCU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 340 730 1061 1074 1100
Modification Positions Y Y m6A m6A Y
Genomic Coordinates 1:44747443:+ 1:44754824:+ 1:44757908:+ 1:44757921:+ 1:44757947:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8