General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000490673
Gene ID:	ENSG00000054277
Gene Name:	OPN3
Sequence (UNICHARACTER ENCODING)	AGAGCAGGCGGCGGAGCCCCAACCCCACCCAGUGCGGAGCGCGCCGCGAGCCCCGCCGCAAGCUGAGCGCCUCCGCCCGCCAGGCGCGCCGGCGCCGGGCCAUGUACUCGGGGAACCGCAGCGGCGGCCACGGCUACUGGGACGGCGGCGGGGCCGCGGGCGCUGAGGGGCCGGCGCCGGCGGGGACACUGAGCCCCGCGCCCCUCUUCAGCCCCGGCACCUACGAGCGCCUGGCGCUGCUGCUGGGCUCCAUUGGGCUGCUGGGCGUCGGCAACAACCUGCUGGUGCUCGUCCUCUACUACЖAGUUCCAGCGGCUCCGCACUCCCACUCACCPCCUCCUGGUCAACAUCAGCCUCAGCGACCUGCUGGUGUCCCUCUUCGGGGUCACCUPUACCUUCGUGUCCUGCCUGAGGAACGGCUGGGUGUGGGACACCGUGGGCUGCGUGUGGGACGGGUUUAGCGGCAGCCUCUUCGCUUCGUUGUGUGGAAGAUCUUCAGACAAUUCAAGUGAUCAAGAUUUUAAAAUAUGAAAAGAAACUGGCCAAAAUGUGCUUUUUAAUGAUAUUCACCUUCCUGGUCUGUUGGAUGCCUUAUAUCGUGAUCUGCUUCUUGGUGGUUAAUGGUCAUGGUCACCUGGUCACUCCAACAAUAUCUAUUGUUUCGUACCUCUUUGCUAAAUCGAACACUGUAUACAAUCCAGUGAUUUAUGUCUUCAUGAUCAGAAAGUUUCGAAGAUCCCUUUUGCAGCUUCUGUGCCUCCGACUGCUGAGGUGCCAGAGGCCUGCUAAAGЖCCUACCAGCAGCUGGAAGUGAAAUGCAGAUCAGACCCAUUGUGAUGUCACAGAAAGAUGGGGЖCAGGCCAAAGAAAAAAGUGЖCUUUCAACUCUUCUUCCAUCAUUUUUAUCAUCACCAGUGAUGAAUCACUGUCAGUUGACGACAGCGACAAAACCAAUGGGUCCAAAGUUGAUGUAAUCCAAGUUCGUCCUUUGUAGGAAUGAAGAAUGGCAACGAAAGAUGGGGCCUUAAAUUGGAUGCCACUUUUGGЖCUUUCAUCAUAAGAAGUGUCUGGAAUACCCGUUCUAUGUAAUAUCAACAGAЖCCUUGUGGUCCAGCAGGAAAUCCGAAUUGCCCAUAUGCUCUUGGGCCUCAGGAAGAGGUUGAЖCAAAAACAAAUUCUUUUAAUUCAACGGGUGCUPUACAUAAUGAAAAAACCACUUGUGGCACACGAUGGGCAUCUAЖCAUCAUCAUCUUCUAAUGUGUUGGAGAUUUUCAUUUCAAAUAUAUUUUUUAAAUUACUCUAUUUUCCAAAACACGUAAUGCAUUUUUCUCGAAAAUACCUUACUGUAAAAAUAЖCUGUCGCGUACACAUGUGUGAAGUAGCUAGAACAUACUGAAUUUUUUUUGUACUGUUGGЖCUCUAUUCAGUGUCAUGUCCUAUAUCUGAUCAAGUUAUCAAGGAGAUAAUUCUAGAAUGAAAAAGAAAAUCCUCUUGUUGGAAACAAAAGЖCGUUUUAUAUGUGCAGUAUGACAAAGAGGAGUUUCAGAGACAACUUUGAAUCCUUGUCAGCCUGGAGЖCCAGCACCAGAGGAAUCUACAAGGCAAЖCUCCCAUAUAUUUGCUUCCCCCAAAUUGCUGCCCCUACAGЖCUCAAAGCUCUUUUUCUUUGUUUUGUUGUUUCUCUAAAAAUUUACUGUUCUUUGUCGAUGCUAUAUAAGCCAGGGAGUUCUAAGACGCCAGCUCUUUGAGAUUUGCUCAUUCCCCUGUAUUUCCCACAUAUAUAUUACAUAUACCCGCUAAUAAAUUUAUGUUUGUUUUUCUCUUGUCAA
Sequence (SHORT NAMES ENCODING)	AGAGCAGGCGGCGGAGCCCCAACCCCACCCAGUGCGGAGCGCGCCGCGAGCCCCGCCGCAAGCUGAGCGCCUCCGCCCGCCAGGCGCGCCGGCGCCGGGCCAUGUACUCGGGGAACCGCAGCGGCGGCCACGGCUACUGGGACGGCGGCGGGGCCGCGGGCGCUGAGGGGCCGGCGCCGGCGGGGACACUGAGCCCCGCGCCCCUCUUCAGCCCCGGCACCUACGAGCGCCUGGCGCUGCUGCUGGGCUCCAUUGGGCUGCUGGGCGUCGGCAACAACCUGCUGGUGCUCGUCCUCUACUACm6AAGUUCCAGCGGCUCCGCACUCCCACUCACCYCCUCCUGGUCAACAUCAGCCUCAGCGACCUGCUGGUGUCCCUCUUCGGGGUCACCUYUACCUUCGUGUCCUGCCUGAGGAACGGCUGGGUGUGGGACACCGUGGGCUGCGUGUGGGACGGGUUUAGCGGCAGCCUCUUCGCUUCGUUGUGUGGAAGAUCUUCAGACAAUUCAAGUGAUCAAGAUUUUAAAAUAUGAAAAGAAACUGGCCAAAAUGUGCUUUUUAAUGAUAUUCACCUUCCUGGUCUGUUGGAUGCCUUAUAUCGUGAUCUGCUUCUUGGUGGUUAAUGGUCAUGGUCACCUGGUCACUCCAACAAUAUCUAUUGUUUCGUACCUCUUUGCUAAAUCGAACACUGUAUACAAUCCAGUGAUUUAUGUCUUCAUGAUCAGAAAGUUUCGAAGAUCCCUUUUGCAGCUUCUGUGCCUCCGACUGCUGAGGUGCCAGAGGCCUGCUAAAGm6ACCUACCAGCAGCUGGAAGUGAAAUGCAGAUCAGACCCAUUGUGAUGUCACAGAAAGAUGGGGm6ACAGGCCAAAGAAAAAAGUGm6ACUUUCAACUCUUCUUCCAUCAUUUUUAUCAUCACCAGUGAUGAAUCACUGUCAGUUGACGACAGCGACAAAACCAAUGGGUCCAAAGUUGAUGUAAUCCAAGUUCGUCCUUUGUAGGAAUGAAGAAUGGCAACGAAAGAUGGGGCCUUAAAUUGGAUGCCACUUUUGGm6ACUUUCAUCAUAAGAAGUGUCUGGAAUACCCGUUCUAUGUAAUAUCAACAGAm6ACCUUGUGGUCCAGCAGGAAAUCCGAAUUGCCCAUAUGCUCUUGGGCCUCAGGAAGAGGUUGAm6ACAAAAACAAAUUCUUUUAAUUCAACGGGUGCUYUACAUAAUGAAAAAACCACUUGUGGCACACGAUGGGCAUCUAm6ACAUCAUCAUCUUCUAAUGUGUUGGAGAUUUUCAUUUCAAAUAUAUUUUUUAAAUUACUCUAUUUUCCAAAACACGUAAUGCAUUUUUCUCGAAAAUACCUUACUGUAAAAAUAm6ACUGUCGCGUACACAUGUGUGAAGUAGCUAGAACAUACUGAAUUUUUUUUGUACUGUUGGm6ACUCUAUUCAGUGUCAUGUCCUAUAUCUGAUCAAGUUAUCAAGGAGAUAAUUCUAGAAUGAAAAAGAAAAUCCUCUUGUUGGAAACAAAAGm6ACGUUUUAUAUGUGCAGUAUGACAAAGAGGAGUUUCAGAGACAACUUUGAAUCCUUGUCAGCCUGGAGm6ACCAGCACCAGAGGAAUCUACAAGGCAAm6ACUCCCAUAUAUUUGCUUCCCCCAAAUUGCUGCCCCUACAGm6ACUCAAAGCUCUUUUUCUUUGUUUUGUUGUUUCUCUAAAAAUUUACUGUUCUUUGUCGAUGCUAUAUAAGCCAGGGAGUUCUAAGACGCCAGCUCUUUGAGAUUUGCUCAUUCCCCUGUAUUUCCCACAUAUAUAUUACAUAUACCCGCUAAUAAAUUUAUGUUUGUUUUUCUCUUGUCAA
Sequence (MODOMICS CODE ENCODING)	AGAGCAGGCGGCGGAGCCCCAACCCCACCCAGUGCGGAGCGCGCCGCGAGCCCCGCCGCAAGCUGAGCGCCUCCGCCCGCCAGGCGCGCCGGCGCCGGGCCAUGUACUCGGGGAACCGCAGCGGCGGCCACGGCUACUGGGACGGCGGCGGGGCCGCGGGCGCUGAGGGGCCGGCGCCGGCGGGGACACUGAGCCCCGCGCCCCUCUUCAGCCCCGGCACCUACGAGCGCCUGGCGCUGCUGCUGGGCUCCAUUGGGCUGCUGGGCGUCGGCAACAACCUGCUGGUGCUCGUCCUCUACUAC2000000006AAGUUCCAGCGGCUCCGCACUCCCACUCACC2000000009UCCUCCUGGUCAACAUCAGCCUCAGCGACCUGCUGGUGUCCCUCUUCGGGGUCACCU2000000009UUACCUUCGUGUCCUGCCUGAGGAACGGCUGGGUGUGGGACACCGUGGGCUGCGUGUGGGACGGGUUUAGCGGCAGCCUCUUCGCUUCGUUGUGUGGAAGAUCUUCAGACAAUUCAAGUGAUCAAGAUUUUAAAAUAUGAAAAGAAACUGGCCAAAAUGUGCUUUUUAAUGAUAUUCACCUUCCUGGUCUGUUGGAUGCCUUAUAUCGUGAUCUGCUUCUUGGUGGUUAAUGGUCAUGGUCACCUGGUCACUCCAACAAUAUCUAUUGUUUCGUACCUCUUUGCUAAAUCGAACACUGUAUACAAUCCAGUGAUUUAUGUCUUCAUGAUCAGAAAGUUUCGAAGAUCCCUUUUGCAGCUUCUGUGCCUCCGACUGCUGAGGUGCCAGAGGCCUGCUAAAG2000000006ACCUACCAGCAGCUGGAAGUGAAAUGCAGAUCAGACCCAUUGUGAUGUCACAGAAAGAUGGGG2000000006ACAGGCCAAAGAAAAAAGUG2000000006ACUUUCAACUCUUCUUCCAUCAUUUUUAUCAUCACCAGUGAUGAAUCACUGUCAGUUGACGACAGCGACAAAACCAAUGGGUCCAAAGUUGAUGUAAUCCAAGUUCGUCCUUUGUAGGAAUGAAGAAUGGCAACGAAAGAUGGGGCCUUAAAUUGGAUGCCACUUUUGG2000000006ACUUUCAUCAUAAGAAGUGUCUGGAAUACCCGUUCUAUGUAAUAUCAACAGA2000000006ACCUUGUGGUCCAGCAGGAAAUCCGAAUUGCCCAUAUGCUCUUGGGCCUCAGGAAGAGGUUGA2000000006ACAAAAACAAAUUCUUUUAAUUCAACGGGUGCU2000000009UUACAUAAUGAAAAAACCACUUGUGGCACACGAUGGGCAUCUA2000000006ACAUCAUCAUCUUCUAAUGUGUUGGAGAUUUUCAUUUCAAAUAUAUUUUUUAAAUUACUCUAUUUUCCAAAACACGUAAUGCAUUUUUCUCGAAAAUACCUUACUGUAAAAAUA2000000006ACUGUCGCGUACACAUGUGUGAAGUAGCUAGAACAUACUGAAUUUUUUUUGUACUGUUGG2000000006ACUCUAUUCAGUGUCAUGUCCUAUAUCUGAUCAAGUUAUCAAGGAGAUAAUUCUAGAAUGAAAAAGAAAAUCCUCUUGUUGGAAACAAAAG2000000006ACGUUUUAUAUGUGCAGUAUGACAAAGAGGAGUUUCAGAGACAACUUUGAAUCCUUGUCAGCCUGGAG2000000006ACCAGCACCAGAGGAAUCUACAAGGCAA2000000006ACUCCCAUAUAUUUGCUUCCCCCAAAUUGCUGCCCCUACAG2000000006ACUCAAAGCUCUUUUUCUUUGUUUUGUUGUUUCUCUAAAAAUUUACUGUUCUUUGUCGAUGCUAUAUAAGCCAGGGAGUUCUAAGACGCCAGCUCUUUGAGAUUUGCUCAUUCCCCUGUAUUUCCCACAUAUAUAUUACAUAUACCCGCUAAUAAAUUUAUGUUUGUUUUUCUCUUGUCAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	303	334	391	791	854	874	1043	1095	1158	1191	1234	1348	1408	1499	1567	1595	1636
Modification Positions	m6A	Y	Y	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	1:241640053:-	1:241640022:-	1:241639965:-	1:241594627:-	1:241594564:-	1:241594544:-	1:241594375:-	1:241594323:-	1:241594260:-	1:241594227:-	1:241594184:-	1:241594070:-	1:241594010:-	1:241593919:-	1:241593851:-	1:241593823:-	1:241593782:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	UN3tNpbCPHYf D6ncpa2PPWj3 ArijeGVTwYBw bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB WdHxkJGRmFxn bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB WdHxkJGRmFxn bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr	bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn KENzb7mwdBd9 Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr	5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	aJksAshEgQ8U D6ncpa2PPWj3	bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr	bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr