General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000488683
Gene ID:	ENSG00000169504
Gene Name:	CLIC4
Sequence (UNICHARACTER ENCODING)	AGAGUGGCGCGGGGGGCGUGGGGCGGUGCUGAGGAGCUGAAGCCGUGGCCAGCUCGACGCCGGACAGUCCAGCGAGCAGCACGGCGGGAACCGGCAGCCGGAGCAGUCCCGGAGCAGAAGCAGCAGCAGCAGCAGCAGCCCUCGCCGUUCGCGGAGCGCAGCCGAGCCGGCCAUGGCGUUGUCGAUGCCGCUGAAUGGGCUGAAGGAGGAGGACAAAGAGCCCCUCAUCGAGCUCUUCGUCAAGGCUGGCAGUGAUGGUGAAAGCAUAGGAAACUGCCCCUUUUCCCAGAGGCUCUUCAUGAUUCUUUGGCUCAAAGGAGUUGUAUUUAGUGUGACGACUGUUGACCUGAAAAGGAAGCCAGCAGACCUGCAGAACUUGGCUCCCGGGACCCACCCACCAUUUAUAЖCUUUCAACAGUGAAGUCAAAACGGAUGUAAAUAAGAUUGAGGAAUUUCUUGAAGAAGUCUUAUGCCCUCCCAAGUACUUAAAGCUUUCACCAAAACACCCAGAAUCAAAUACUGCUGGAAUGGACAUCUUUGCCAAAUUCUCUGCAUAUAUCAAGAAUUCAAGGCCAGAGGCUAAUGAAGCACUGGAGAGGGGUCUCCUGAAAACCCUGCAGAAACUGGAUGAAUAUCUGAAUUCUCCUCUCCCUGAUGAAAUUGAUGAAAAUAGUAUGGAGGACAUAAAGUUUUCUACACGUAAAUUUCUGGAUGGCAAUGAAAUGACAUUAGCUGAUUGCAACCUGCUGCCCAAACUGCAUAUUGUCAAGGUGGUGGCCAAAAAAUAUCGCAACUUUGAUAUUCCAAAAGAAAUGACUGGCAUCUGGAGAUACCUAACUAAUGCAUACЖGUAGGGACGAGUUCACCAAUACCUGUCCCAGUGAUAAGGAGGUUGAAAUAGCAUAUAGUGAUGUAGCCAAAAGЖCUCACCAAGUAAAAUCGCGUUUGUAAAAGAGAUGUCUUCAUGUCUUCCCCUAAGAAUACGCUUUUCCUAACAGGCUACUCCUUCCUGUAGAGCAGAAAUUGUAUUUUGCACGAACAUGCAGUUAUUGAAGAUUAGGAUCAAGGAUAGACAAGGUAUAGUAGUUAUCUUAAAAUAUACACUCCUAAGCAGUAUUAUUUUAAAAUCCUPUACCCUGGCUACCUCCCCUACCCGGGUUCCCCUCUCUPUAAUUUGGAGACACUCCACCACAAACUUUUCACUPUAGAGGUAGCUUGCCAUCUCUCAGGAGCCCUCACCAUUGUGUCCAUUCACUGUGUAUAGAUGGCAGAACUUUUGAGGUGCAAUGUUUAAUUGUUAAAAAUAGUAGCCACGACUPUAUCAGGCAGCCCCAAACUGGUGCAUAAUGCAUGGUACAAGAAAUAUUUAUGUAUUUUUUGGAAUUUUGUAAUAUUUAGUAAGAGUAUAUGAAAGGAUUGCUACUGUAUCAGAAAUAUUGUUUCAAUUUAGUCUAUCCUGGAUAUGUACUAACGAAUAUUACCACCAGAGAAGAGAGCUUUCUACAAAAGUCACUACЖGAUUUUGCUAUAUUGCUUUGUAGAUAGAUUUUUACUUUUGCCUAAAAGCAUUUAUCCUUCAUACCAAUUGUAЖCAUCUGACACCAUGUAGAAGCUAAAAGUUUAGAGGGAGUGAGGGUUUUCUCAAGACCUUCCUCAAGCAUUUUAUCUPUAGAAGAGAAACUGAUGGGCACCUGAUACUCUGUCUAAAUACGUUUGUUAUAUGUGUUUUGCCCUGUGCCAUUCAUUUGGAACUPUAUUGCAUUCUPUAUUUUAAAAAGCUUGUUUUUACGUAAUCAUAGAGCUUGCUAUUUGUACЖUCUGUUGAGCAACACUACAUAACUGAUUUUUAGUUGACUUAGCUAUAGCAGUACAAUGAUUAGUAAUGUAAAAAUUAACACAGAAAUUAACCUAAGGAAUGAAGGGUGGGUUUGUCAAAAUAUCAAGUAAAUUUUUGUUUCUAAAGUACAUUUAAUGUAGAUGACCUAAAGAAUGCGUUAUCCAUCCUAUAUAAAAGAAAGAUAAAACACAGGUCACCAAUUUUCUCAUUUCACCCCAUUUACCUUGUAUAGAGGAUUGUUCAUUCCUUUGGGACUAAGUUAUAGUUAUGGUGAGUGUGUAUUUACUGUAGUUUUGCCUGAUCUCACUCAUUGCACUUCCUGGAGUUAAAUUUUCCAACAGCCAUGUUGAGGAAUAGCACUCUGCAUGUUUUUGUUUUGUUUUUCGGGGUUUUUUUUAAUUGAAGCCCUAAACCAGGAAUUAUUUGUGUUCUAACAGGAGGAUGAACUUGCUGAAAAUAAAACUUUGCUAUGUAUUUACUCUUUUUUAAAAGACAAAAGCAAAACCAGACUUUCUACGUACUACUCCAAAGACUGUGAUUGUGACUAUAAUACAUUUUUGGUAAUUUUUUUAUACCUAAUUUGUAUAGGAAGUGCUAUUUCUCAUAGGCUGUUUCUUGAAAUUUUAAGUUUAUUGCUPUAAAAUGGCAGUGUUUCUCCCACUUUGAUAUGCUAЖCAUUUAGUAAGCACUGGCUPUAUGAAAGCGGCUUUUUAUAAGUAUACUGCAUUUUUUGAGCCUAUCAUUAAUUAGCUUAGUAUUUUCUPUAUAAUUUCUUGAACAGGCAAAUGAAAGCUUAUUAUAGAAUGCAUGUAUUUUCUUUUAUCUUUGGAЖCЖUCAGCACCAGUAUAUUGCUGGCAGCUAUUGUAUUAAAAAAUAAAGUAUAUUUUCACUAUC
Sequence (SHORT NAMES ENCODING)	AGAGUGGCGCGGGGGGCGUGGGGCGGUGCUGAGGAGCUGAAGCCGUGGCCAGCUCGACGCCGGACAGUCCAGCGAGCAGCACGGCGGGAACCGGCAGCCGGAGCAGUCCCGGAGCAGAAGCAGCAGCAGCAGCAGCAGCCCUCGCCGUUCGCGGAGCGCAGCCGAGCCGGCCAUGGCGUUGUCGAUGCCGCUGAAUGGGCUGAAGGAGGAGGACAAAGAGCCCCUCAUCGAGCUCUUCGUCAAGGCUGGCAGUGAUGGUGAAAGCAUAGGAAACUGCCCCUUUUCCCAGAGGCUCUUCAUGAUUCUUUGGCUCAAAGGAGUUGUAUUUAGUGUGACGACUGUUGACCUGAAAAGGAAGCCAGCAGACCUGCAGAACUUGGCUCCCGGGACCCACCCACCAUUUAUAm6ACUUUCAACAGUGAAGUCAAAACGGAUGUAAAUAAGAUUGAGGAAUUUCUUGAAGAAGUCUUAUGCCCUCCCAAGUACUUAAAGCUUUCACCAAAACACCCAGAAUCAAAUACUGCUGGAAUGGACAUCUUUGCCAAAUUCUCUGCAUAUAUCAAGAAUUCAAGGCCAGAGGCUAAUGAAGCACUGGAGAGGGGUCUCCUGAAAACCCUGCAGAAACUGGAUGAAUAUCUGAAUUCUCCUCUCCCUGAUGAAAUUGAUGAAAAUAGUAUGGAGGACAUAAAGUUUUCUACACGUAAAUUUCUGGAUGGCAAUGAAAUGACAUUAGCUGAUUGCAACCUGCUGCCCAAACUGCAUAUUGUCAAGGUGGUGGCCAAAAAAUAUCGCAACUUUGAUAUUCCAAAAGAAAUGACUGGCAUCUGGAGAUACCUAACUAAUGCAUACm6AGUAGGGACGAGUUCACCAAUACCUGUCCCAGUGAUAAGGAGGUUGAAAUAGCAUAUAGUGAUGUAGCCAAAAGm6ACUCACCAAGUAAAAUCGCGUUUGUAAAAGAGAUGUCUUCAUGUCUUCCCCUAAGAAUACGCUUUUCCUAACAGGCUACUCCUUCCUGUAGAGCAGAAAUUGUAUUUUGCACGAACAUGCAGUUAUUGAAGAUUAGGAUCAAGGAUAGACAAGGUAUAGUAGUUAUCUUAAAAUAUACACUCCUAAGCAGUAUUAUUUUAAAAUCCUYUACCCUGGCUACCUCCCCUACCCGGGUUCCCCUCUCUYUAAUUUGGAGACACUCCACCACAAACUUUUCACUYUAGAGGUAGCUUGCCAUCUCUCAGGAGCCCUCACCAUUGUGUCCAUUCACUGUGUAUAGAUGGCAGAACUUUUGAGGUGCAAUGUUUAAUUGUUAAAAAUAGUAGCCACGACUYUAUCAGGCAGCCCCAAACUGGUGCAUAAUGCAUGGUACAAGAAAUAUUUAUGUAUUUUUUGGAAUUUUGUAAUAUUUAGUAAGAGUAUAUGAAAGGAUUGCUACUGUAUCAGAAAUAUUGUUUCAAUUUAGUCUAUCCUGGAUAUGUACUAACGAAUAUUACCACCAGAGAAGAGAGCUUUCUACAAAAGUCACUACm6AGAUUUUGCUAUAUUGCUUUGUAGAUAGAUUUUUACUUUUGCCUAAAAGCAUUUAUCCUUCAUACCAAUUGUAm6ACAUCUGACACCAUGUAGAAGCUAAAAGUUUAGAGGGAGUGAGGGUUUUCUCAAGACCUUCCUCAAGCAUUUUAUCUYUAGAAGAGAAACUGAUGGGCACCUGAUACUCUGUCUAAAUACGUUUGUUAUAUGUGUUUUGCCCUGUGCCAUUCAUUUGGAACUYUAUUGCAUUCUYUAUUUUAAAAAGCUUGUUUUUACGUAAUCAUAGAGCUUGCUAUUUGUACm6AUCUGUUGAGCAACACUACAUAACUGAUUUUUAGUUGACUUAGCUAUAGCAGUACAAUGAUUAGUAAUGUAAAAAUUAACACAGAAAUUAACCUAAGGAAUGAAGGGUGGGUUUGUCAAAAUAUCAAGUAAAUUUUUGUUUCUAAAGUACAUUUAAUGUAGAUGACCUAAAGAAUGCGUUAUCCAUCCUAUAUAAAAGAAAGAUAAAACACAGGUCACCAAUUUUCUCAUUUCACCCCAUUUACCUUGUAUAGAGGAUUGUUCAUUCCUUUGGGACUAAGUUAUAGUUAUGGUGAGUGUGUAUUUACUGUAGUUUUGCCUGAUCUCACUCAUUGCACUUCCUGGAGUUAAAUUUUCCAACAGCCAUGUUGAGGAAUAGCACUCUGCAUGUUUUUGUUUUGUUUUUCGGGGUUUUUUUUAAUUGAAGCCCUAAACCAGGAAUUAUUUGUGUUCUAACAGGAGGAUGAACUUGCUGAAAAUAAAACUUUGCUAUGUAUUUACUCUUUUUUAAAAGACAAAAGCAAAACCAGACUUUCUACGUACUACUCCAAAGACUGUGAUUGUGACUAUAAUACAUUUUUGGUAAUUUUUUUAUACCUAAUUUGUAUAGGAAGUGCUAUUUCUCAUAGGCUGUUUCUUGAAAUUUUAAGUUUAUUGCUYUAAAAUGGCAGUGUUUCUCCCACUUUGAUAUGCUAm6ACAUUUAGUAAGCACUGGCUYUAUGAAAGCGGCUUUUUAUAAGUAUACUGCAUUUUUUGAGCCUAUCAUUAAUUAGCUUAGUAUUUUCUYUAUAAUUUCUUGAACAGGCAAAUGAAAGCUUAUUAUAGAAUGCAUGUAUUUUCUUUUAUCUUUGGAm6ACm6AUCAGCACCAGUAUAUUGCUGGCAGCUAUUGUAUUAAAAAAUAAAGUAUAUUUUCACUAUC
Sequence (MODOMICS CODE ENCODING)	AGAGUGGCGCGGGGGGCGUGGGGCGGUGCUGAGGAGCUGAAGCCGUGGCCAGCUCGACGCCGGACAGUCCAGCGAGCAGCACGGCGGGAACCGGCAGCCGGAGCAGUCCCGGAGCAGAAGCAGCAGCAGCAGCAGCAGCCCUCGCCGUUCGCGGAGCGCAGCCGAGCCGGCCAUGGCGUUGUCGAUGCCGCUGAAUGGGCUGAAGGAGGAGGACAAAGAGCCCCUCAUCGAGCUCUUCGUCAAGGCUGGCAGUGAUGGUGAAAGCAUAGGAAACUGCCCCUUUUCCCAGAGGCUCUUCAUGAUUCUUUGGCUCAAAGGAGUUGUAUUUAGUGUGACGACUGUUGACCUGAAAAGGAAGCCAGCAGACCUGCAGAACUUGGCUCCCGGGACCCACCCACCAUUUAUA2000000006ACUUUCAACAGUGAAGUCAAAACGGAUGUAAAUAAGAUUGAGGAAUUUCUUGAAGAAGUCUUAUGCCCUCCCAAGUACUUAAAGCUUUCACCAAAACACCCAGAAUCAAAUACUGCUGGAAUGGACAUCUUUGCCAAAUUCUCUGCAUAUAUCAAGAAUUCAAGGCCAGAGGCUAAUGAAGCACUGGAGAGGGGUCUCCUGAAAACCCUGCAGAAACUGGAUGAAUAUCUGAAUUCUCCUCUCCCUGAUGAAAUUGAUGAAAAUAGUAUGGAGGACAUAAAGUUUUCUACACGUAAAUUUCUGGAUGGCAAUGAAAUGACAUUAGCUGAUUGCAACCUGCUGCCCAAACUGCAUAUUGUCAAGGUGGUGGCCAAAAAAUAUCGCAACUUUGAUAUUCCAAAAGAAAUGACUGGCAUCUGGAGAUACCUAACUAAUGCAUAC2000000006AGUAGGGACGAGUUCACCAAUACCUGUCCCAGUGAUAAGGAGGUUGAAAUAGCAUAUAGUGAUGUAGCCAAAAG2000000006ACUCACCAAGUAAAAUCGCGUUUGUAAAAGAGAUGUCUUCAUGUCUUCCCCUAAGAAUACGCUUUUCCUAACAGGCUACUCCUUCCUGUAGAGCAGAAAUUGUAUUUUGCACGAACAUGCAGUUAUUGAAGAUUAGGAUCAAGGAUAGACAAGGUAUAGUAGUUAUCUUAAAAUAUACACUCCUAAGCAGUAUUAUUUUAAAAUCCU2000000009UUACCCUGGCUACCUCCCCUACCCGGGUUCCCCUCUCU2000000009UUAAUUUGGAGACACUCCACCACAAACUUUUCACU2000000009UUAGAGGUAGCUUGCCAUCUCUCAGGAGCCCUCACCAUUGUGUCCAUUCACUGUGUAUAGAUGGCAGAACUUUUGAGGUGCAAUGUUUAAUUGUUAAAAAUAGUAGCCACGACU2000000009UUAUCAGGCAGCCCCAAACUGGUGCAUAAUGCAUGGUACAAGAAAUAUUUAUGUAUUUUUUGGAAUUUUGUAAUAUUUAGUAAGAGUAUAUGAAAGGAUUGCUACUGUAUCAGAAAUAUUGUUUCAAUUUAGUCUAUCCUGGAUAUGUACUAACGAAUAUUACCACCAGAGAAGAGAGCUUUCUACAAAAGUCACUAC2000000006AGAUUUUGCUAUAUUGCUUUGUAGAUAGAUUUUUACUUUUGCCUAAAAGCAUUUAUCCUUCAUACCAAUUGUA2000000006ACAUCUGACACCAUGUAGAAGCUAAAAGUUUAGAGGGAGUGAGGGUUUUCUCAAGACCUUCCUCAAGCAUUUUAUCU2000000009UUAGAAGAGAAACUGAUGGGCACCUGAUACUCUGUCUAAAUACGUUUGUUAUAUGUGUUUUGCCCUGUGCCAUUCAUUUGGAACU2000000009UUAUUGCAUUCU2000000009UUAUUUUAAAAAGCUUGUUUUUACGUAAUCAUAGAGCUUGCUAUUUGUAC2000000006AUCUGUUGAGCAACACUACAUAACUGAUUUUUAGUUGACUUAGCUAUAGCAGUACAAUGAUUAGUAAUGUAAAAAUUAACACAGAAAUUAACCUAAGGAAUGAAGGGUGGGUUUGUCAAAAUAUCAAGUAAAUUUUUGUUUCUAAAGUACAUUUAAUGUAGAUGACCUAAAGAAUGCGUUAUCCAUCCUAUAUAAAAGAAAGAUAAAACACAGGUCACCAAUUUUCUCAUUUCACCCCAUUUACCUUGUAUAGAGGAUUGUUCAUUCCUUUGGGACUAAGUUAUAGUUAUGGUGAGUGUGUAUUUACUGUAGUUUUGCCUGAUCUCACUCAUUGCACUUCCUGGAGUUAAAUUUUCCAACAGCCAUGUUGAGGAAUAGCACUCUGCAUGUUUUUGUUUUGUUUUUCGGGGUUUUUUUUAAUUGAAGCCCUAAACCAGGAAUUAUUUGUGUUCUAACAGGAGGAUGAACUUGCUGAAAAUAAAACUUUGCUAUGUAUUUACUCUUUUUUAAAAGACAAAAGCAAAACCAGACUUUCUACGUACUACUCCAAAGACUGUGAUUGUGACUAUAAUACAUUUUUGGUAAUUUUUUUAUACCUAAUUUGUAUAGGAAGUGCUAUUUCUCAUAGGCUGUUUCUUGAAAUUUUAAGUUUAUUGCU2000000009UUAAAAUGGCAGUGUUUCUCCCACUUUGAUAUGCUA2000000006ACAUUUAGUAAGCACUGGCU2000000009UUAUGAAAGCGGCUUUUUAUAAGUAUACUGCAUUUUUUGAGCCUAUCAUUAAUUAGCUUAGUAUUUUCU2000000009UUAUAAUUUCUUGAACAGGCAAAUGAAAGCUUAUUAUAGAAUGCAUGUAUUUUCUUUUAUCUUUGGA2000000006AC2000000006AUCAGCACCAGUAUAUUGCUGGCAGCUAUUGUAUUAAAAAAUAAAGUAUAUUUUCACUAUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	407	848	922	1129	1167	1202	1316	1514	1587	1664	1749	1761	1811	2469	2505	2525	2594	2661	2663
Modification Positions	m6A	m6A	m6A	Y	Y	Y	Y	m6A	m6A	Y	Y	Y	m6A	Y	m6A	Y	Y	m6A	m6A
Genomic Coordinates	1:24814146:+	1:24840851:+	1:24840925:+	1:24841132:+	1:24841170:+	1:24841205:+	1:24841319:+	1:24841517:+	1:24841590:+	1:24841667:+	1:24841752:+	1:24841764:+	1:24841814:+	1:24842472:+	1:24842508:+	1:24842528:+	1:24844138:+	1:24844205:+	1:24844207:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	4HMi5ykupT9V 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 93arJtwJmuS9 BkoLW2CBToyL KTLz8piFYdwC nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq eGNFqdoGxzRm Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq eGNFqdoGxzRm Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP eGNFqdoGxzRm Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP eGNFqdoGxzRm Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP eGNFqdoGxzRm Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq dknfVe6BK8aP eGNFqdoGxzRm S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP eGNFqdoGxzRm Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP eGNFqdoGxzRm S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL