General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000529214
Gene ID:	ENSG00000123472
Gene Name:	ATPAF1
Sequence (UNICHARACTER ENCODING)	AGAUGCUAAAUCUUCUGCAAAAUAGGCUACCUAAAGCCUCUGAAUCACCAGGAUCUGAAUAAAGCAGAUGUUUAACCUGGUUGGGGGGACAUAUUUUCAAGAACUGGAUGUAUUCAAGUAAAAGCUUGACACCUAGUAAGGAGGCUAUAGGAUUCUUGUCUGAAGAGGUGAUCCAGCAAGAUGACCUCAAAAUUCUAAGUACCCUGAAUGUCAGACCCAGCUGCUUUUGAGUCCCGCCUGGAGAAACGCAGUGAAUUUCGGAAGCAGCCAGUGGGGCAUUCCAGGCAAGGUGAUUUUAUCAAAUGUGUGGAACAGAAGGAUGGUGCACAGAACAAACUGGUGUAGGAGAGGCCAGCGCCAGGGAGAAUAUGGAGUAAUCCAGGUGUGGGCUGCAGAAGCCUGAAUUAAGACAGAUGCCUUGGGGAAACAGUCUGUGAЖCAGAGGAUUCACUAAGGACAAGACUCUCAGUUCAAUCUPUAЖCAUUGAGAUGGUAAAAGAAAAAACUGCAGAAGAAAUAAAACAGAUUUGGCAGCAAUAUUUUGCAGCAAAAGAUACAGUCUACGCAGUUAUUCCUGCAGAAAAGUUUGAUUUGAUCUGGAЖCCGGGCUCAGUCCUGUCCAACAUUUCUAUGUGCUCUGCCAAGAAGGGAAGGUUAUGAGUUUUUUGUAGGЖCAAUGGACAGGUACUGAACUCCACUUCACUGCACUUAUAAAUAUUCAGACCCGAGGGGAAGCUGCAGCCAGCCAGCUGAUUUUAUAUCACUAUCCUGAACUUAAGGAAGAAAAGGGCAUAGUGCUGAUGACUGCAGAAAUGGAUUCCACAUUUCUGAAUGUUGCUGAGGCACAGUGCAUCGCCAACCAAGUUCAGCUCUUCUACGCUACUGAUCGGAAAGAGЖCCUACGGGUUAGUGGAGACCUPUAACCUCAGACCAAAUGAGUUCAAAUAUAUGUCUGUCAUCGCUGAAUUGGAGCAAAGCGGЖCUUGGAGCAGAACUGAAAUGUGCCCAGAACCAAAAUAAGACUUAGAACUGUACAGGUUGGCCCUUCACCUAGUUGACUCAGCCCUCGAUAGUCUAGAGCCCACCCCCUCCUCAGGAACUCAAGAGCUCAGCAUUUAUAAUGAGCAGUUGGUAAUGAGUUGCCCUAUGUGCUUGUCGCAAGCAGUCACAGAGAUGAGCCCUAUUACUUGAUAUUCAGGAACAAAGGUACCUGAACAUUCUGAUAAUUAUCUCAGCAUACUUGAGGUUUCCUUUUUUAAGUGUUCGAGGUUAUAЖCAAGAGACAGCCAAGGACCUACAAGЖCAGUUGACUUGAUUUUGCACAGUGUAACAGCGCAGUUGCAUUCUGGCCACUUUGACCUUAUAGCUCCCAAAUGAUGAGUUUGUCAUCUPUAUGAACUCAUGACAGGAUAAUAAGCUUGAAGACCUGCUGUAGUUAGAUAUGGGCUPUAAUCCUUCCCAGGCACCAGUCAGCUGAAC
Sequence (SHORT NAMES ENCODING)	AGAUGCUAAAUCUUCUGCAAAAUAGGCUACCUAAAGCCUCUGAAUCACCAGGAUCUGAAUAAAGCAGAUGUUUAACCUGGUUGGGGGGACAUAUUUUCAAGAACUGGAUGUAUUCAAGUAAAAGCUUGACACCUAGUAAGGAGGCUAUAGGAUUCUUGUCUGAAGAGGUGAUCCAGCAAGAUGACCUCAAAAUUCUAAGUACCCUGAAUGUCAGACCCAGCUGCUUUUGAGUCCCGCCUGGAGAAACGCAGUGAAUUUCGGAAGCAGCCAGUGGGGCAUUCCAGGCAAGGUGAUUUUAUCAAAUGUGUGGAACAGAAGGAUGGUGCACAGAACAAACUGGUGUAGGAGAGGCCAGCGCCAGGGAGAAUAUGGAGUAAUCCAGGUGUGGGCUGCAGAAGCCUGAAUUAAGACAGAUGCCUUGGGGAAACAGUCUGUGAm6ACAGAGGAUUCACUAAGGACAAGACUCUCAGUUCAAUCUYUAm6ACAUUGAGAUGGUAAAAGAAAAAACUGCAGAAGAAAUAAAACAGAUUUGGCAGCAAUAUUUUGCAGCAAAAGAUACAGUCUACGCAGUUAUUCCUGCAGAAAAGUUUGAUUUGAUCUGGAm6ACCGGGCUCAGUCCUGUCCAACAUUUCUAUGUGCUCUGCCAAGAAGGGAAGGUUAUGAGUUUUUUGUAGGm6ACAAUGGACAGGUACUGAACUCCACUUCACUGCACUUAUAAAUAUUCAGACCCGAGGGGAAGCUGCAGCCAGCCAGCUGAUUUUAUAUCACUAUCCUGAACUUAAGGAAGAAAAGGGCAUAGUGCUGAUGACUGCAGAAAUGGAUUCCACAUUUCUGAAUGUUGCUGAGGCACAGUGCAUCGCCAACCAAGUUCAGCUCUUCUACGCUACUGAUCGGAAAGAGm6ACCUACGGGUUAGUGGAGACCUYUAACCUCAGACCAAAUGAGUUCAAAUAUAUGUCUGUCAUCGCUGAAUUGGAGCAAAGCGGm6ACUUGGAGCAGAACUGAAAUGUGCCCAGAACCAAAAUAAGACUUAGAACUGUACAGGUUGGCCCUUCACCUAGUUGACUCAGCCCUCGAUAGUCUAGAGCCCACCCCCUCCUCAGGAACUCAAGAGCUCAGCAUUUAUAAUGAGCAGUUGGUAAUGAGUUGCCCUAUGUGCUUGUCGCAAGCAGUCACAGAGAUGAGCCCUAUUACUUGAUAUUCAGGAACAAAGGUACCUGAACAUUCUGAUAAUUAUCUCAGCAUACUUGAGGUUUCCUUUUUUAAGUGUUCGAGGUUAUAm6ACAAGAGACAGCCAAGGACCUACAAGm6ACAGUUGACUUGAUUUUGCACAGUGUAACAGCGCAGUUGCAUUCUGGCCACUUUGACCUUAUAGCUCCCAAAUGAUGAGUUUGUCAUCUYUAUGAACUCAUGACAGGAUAAUAAGCUUGAAGACCUGCUGUAGUUAGAUAUGGGCUYUAAUCCUUCCCAGGCACCAGUCAGCUGAAC
Sequence (MODOMICS CODE ENCODING)	AGAUGCUAAAUCUUCUGCAAAAUAGGCUACCUAAAGCCUCUGAAUCACCAGGAUCUGAAUAAAGCAGAUGUUUAACCUGGUUGGGGGGACAUAUUUUCAAGAACUGGAUGUAUUCAAGUAAAAGCUUGACACCUAGUAAGGAGGCUAUAGGAUUCUUGUCUGAAGAGGUGAUCCAGCAAGAUGACCUCAAAAUUCUAAGUACCCUGAAUGUCAGACCCAGCUGCUUUUGAGUCCCGCCUGGAGAAACGCAGUGAAUUUCGGAAGCAGCCAGUGGGGCAUUCCAGGCAAGGUGAUUUUAUCAAAUGUGUGGAACAGAAGGAUGGUGCACAGAACAAACUGGUGUAGGAGAGGCCAGCGCCAGGGAGAAUAUGGAGUAAUCCAGGUGUGGGCUGCAGAAGCCUGAAUUAAGACAGAUGCCUUGGGGAAACAGUCUGUGA2000000006ACAGAGGAUUCACUAAGGACAAGACUCUCAGUUCAAUCU2000000009UUA2000000006ACAUUGAGAUGGUAAAAGAAAAAACUGCAGAAGAAAUAAAACAGAUUUGGCAGCAAUAUUUUGCAGCAAAAGAUACAGUCUACGCAGUUAUUCCUGCAGAAAAGUUUGAUUUGAUCUGGA2000000006ACCGGGCUCAGUCCUGUCCAACAUUUCUAUGUGCUCUGCCAAGAAGGGAAGGUUAUGAGUUUUUUGUAGG2000000006ACAAUGGACAGGUACUGAACUCCACUUCACUGCACUUAUAAAUAUUCAGACCCGAGGGGAAGCUGCAGCCAGCCAGCUGAUUUUAUAUCACUAUCCUGAACUUAAGGAAGAAAAGGGCAUAGUGCUGAUGACUGCAGAAAUGGAUUCCACAUUUCUGAAUGUUGCUGAGGCACAGUGCAUCGCCAACCAAGUUCAGCUCUUCUACGCUACUGAUCGGAAAGAG2000000006ACCUACGGGUUAGUGGAGACCU2000000009UUAACCUCAGACCAAAUGAGUUCAAAUAUAUGUCUGUCAUCGCUGAAUUGGAGCAAAGCGG2000000006ACUUGGAGCAGAACUGAAAUGUGCCCAGAACCAAAAUAAGACUUAGAACUGUACAGGUUGGCCCUUCACCUAGUUGACUCAGCCCUCGAUAGUCUAGAGCCCACCCCCUCCUCAGGAACUCAAGAGCUCAGCAUUUAUAAUGAGCAGUUGGUAAUGAGUUGCCCUAUGUGCUUGUCGCAAGCAGUCACAGAGAUGAGCCCUAUUACUUGAUAUUCAGGAACAAAGGUACCUGAACAUUCUGAUAAUUAUCUCAGCAUACUUGAGGUUUCCUUUUUUAAGUGUUCGAGGUUAUA2000000006ACAAGAGACAGCCAAGGACCUACAAG2000000006ACAGUUGACUUGAUUUUGCACAGUGUAACAGCGCAGUUGCAUUCUGGCCACUUUGACCUUAUAGCUCCCAAAUGAUGAGUUUGUCAUCU2000000009UUAUGAACUCAUGACAGGAUAAUAAGCUUGAAGACCUGCUGUAGUUAGAUAUGGGCU2000000009UUAAUCCUUCCCAGGCACCAGUCAGCUGAAC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	438	477	480	600	670	893	915	976	1269	1295	1384	1441
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	Y	Y
Genomic Coordinates	1:46658709:-	1:46658173:-	1:46658170:-	1:46652603:-	1:46645209:-	1:46635904:-	1:46635882:-	1:46635821:-	1:46635528:-	1:46635502:-	1:46635413:-	1:46635356:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	8cMbzB4aD5Se WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 XUkp6ghERQML 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	8cMbzB4aD5Se WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8