Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000494995
Gene ID: ENSG00000125459
Gene Name: MSTO1
Sequence (UNICHARACTER ENCODING) AGCGCAGUAUGGCGGGCGGGGCCCGGGAGGUGCUCACACUGCAGUUGGGACAUUUUGCCGGUUUCGUGGGCGCGCACUGGUGGAACCAGCAGGUGAGGUCAGCCGGCAGCUGCCCCCGAGGAGCCCUUCGGGAUCUACAGUCCCGACGUUCAGCCGGCCUGCCUCGUCCUCUCUGCUUCCCCAGGAUGCUGCGCUGGGCCGAGCGACCGAUUCCAAGGAGCCCCCGGGAGAGCUGUGCCCCGACGUCCUGUAUCGUACGGGCCGGACGCUGCACGGCCAGGAGACCUACACGCCGCGACUCAUCCUCAUGGAUCUGAAGGGUAGUUUGAGCUCCCUAAAAGAGGAAGGUGGACUCUACAGGGACAAACAGUUGGAUGCUGCAAUAGCAUGGCAGGGGAAGCUCACCACACACAAAGAGGAACUCUAUCCCAAGAACCCUUAUCUCCAAGACUUUCUGAGUGCAGAGAGGCCAGCAUCAGGGUCUGGUCAGACUUCCUCAGAGUCCAUCUCCAUCCCCGGAGCAUCUGUAUGAUUCAGAAGUACAACCACGAUGGGGAAGCAGGUCGGCUGGAGGCUUUUGGCCAAGGGGAAAGUGUCCUAAAGGAACCCAAGUACCAGGAAGAGCUGGAGGACAGGCUGCAUUUCUACGUGGAGGAAUGUGACUACUUGCAGGGCUUCCAGAUCCUGUGUGACCUGCACGAUGGCUUCUCUGGGGUAGGCGCGAAGGCGGCAGAGCUGCUACAAGAUGAAUAUUCAGGGCGGGGAAUAAUAACCUGGGGCCUGCUACCUGGUCCCUACCAUCGUGGGGAGGCCCAGAGAAACAUCUAUCGUCUAUUAAACACAGCUUUUGGUCUCGUGCACCUGACUGCUCACAGCUCUCUUGUCUGCCCCUUGUCCUUGGGUGGGAGCCUGGGCCUGCGACCCGAGCCACCUGUCAGCUUCCCUUACCUGCAUUAUGAUGCCACUCUGCCCUUCCACUGCAGUGCCAUCCUGGCUACAGCCCUGGACACAGUCACUGUUCCUUAUCGCCUGUGUUCCUCUCCAGUUUCCAUGGUUCAUCUGGCUGACAUGCUGAGCUUCUGUGGGAAAAAGGUGGUGACAGCAGGAGCAAUCAUCCCUUUCCCCUUGGCUCCAGGCCAGUCCCUUCCUGAUUCCCUGAUGCAGUUUGGAGGAGCCACCCCAUGGACCCCACUGUCUGCAUGUGGGGAGCCUUCUGGAACACGUUGCUUUGCCCAGUCAGUGGUGCUGAGGGGUAUAGACAGAGCAUGCCACACAAGCCACAGACUAAUGGUGGUUUUGGCUUUGUUCUGGCAGCCAGCUCACCCCAGGGACACCPCCACCCUCUGCCCUUCAUGCAUGUACCACUGGGGAAGAAAUCUUGGCUCAGUAUUUACAACAGCAGCAGCCUGGAGUCAUGAGUUCUUCCCAUCUGCUGCUGACUCCCUGCAGGGUGGCUCCUCCUUACCCCCACCUCUUCUCAAGCUGCAGUCCACCGGGUAUGGUUCUGGAUGGUUCCCCCAAGGGAGCAGCAGUGGAGAGCAUCCCAGUGUUUGGGGCACUGUGUUCCUCUUCGUCCCUGCACCAGACCCUGGAAGCCUUGGCCAGAGACCUCACCAAACUCGACUUGCGGCGCUGGGCCAGCUUCAUGGAUGCUGGAGUGGAGCACGAUGACGUAGCAGAGCUGCUGCAGGAGCUACAAAGCCUGGCCCAGUGCUACCAGGGUGGUGACAGCCUCGUGGЖCUAAAGUUCCCAGUGUGGGAGAAAGGAGCUAGUUUGCAAUAAAAACAGCUGGAUGCAGGAGCCCAGUGUCUUCAUGCAGAGGAGCUCAAUGUCGCGGGЖCUAGCUACACCAACAUAUGCACUUUUUACAUUUAGAAACACUGUGAUUAGЖCCACAGAЖCAAUAAAUAUGUGCCAUCAGACCAAAAAAAAGUAGAGAAAGGAGCUGAACUCCACUCUCGAUGCUACUUACAGAGGЖCAUCUGUAAAGUCUUCAUAAAAGЖCCUUGAAUGAUGCCUAGGAUGGCAGAGCCCCUGGGUCCUACUCCAPCCUCCAGCCUUUGUCCUUGUCCUGGCCUCCUGCUCUCCAGAUCUGUAAЖCUGGGCUCAAGGЖCUGUACAAGCAGAGUACAACUACCCGCCUCCCCGGUGCCAGGGCGCCUGUUGGGUUUGGUCCUGUGUAGAUGAUUCCCAGAGUCUCAUUCAPCCAGCUCCUCUUCAGACAGAAGGUCCCCAUGGUCAGACAGCUGGUCUGCAUUGCUGGUЖCUGGUUGCAUCAPCCUCAPCCUCAGAGCUGGCUUCACAGGCAGUGUGGAAGAGCUGCAUGAGUUCUCGAAAAUGGUGGGAAACCUAAGAAAGGAGGAGGGCUGUAUUCACUGAUCCUUAGUAACAUGUUAACAUUUAUGAAGCACUAU
Sequence (SHORT NAMES ENCODING) AGCGCAGUAUGGCGGGCGGGGCCCGGGAGGUGCUCACACUGCAGUUGGGACAUUUUGCCGGUUUCGUGGGCGCGCACUGGUGGAACCAGCAGGUGAGGUCAGCCGGCAGCUGCCCCCGAGGAGCCCUUCGGGAUCUACAGUCCCGACGUUCAGCCGGCCUGCCUCGUCCUCUCUGCUUCCCCAGGAUGCUGCGCUGGGCCGAGCGACCGAUUCCAAGGAGCCCCCGGGAGAGCUGUGCCCCGACGUCCUGUAUCGUACGGGCCGGACGCUGCACGGCCAGGAGACCUACACGCCGCGACUCAUCCUCAUGGAUCUGAAGGGUAGUUUGAGCUCCCUAAAAGAGGAAGGUGGACUCUACAGGGACAAACAGUUGGAUGCUGCAAUAGCAUGGCAGGGGAAGCUCACCACACACAAAGAGGAACUCUAUCCCAAGAACCCUUAUCUCCAAGACUUUCUGAGUGCAGAGAGGCCAGCAUCAGGGUCUGGUCAGACUUCCUCAGAGUCCAUCUCCAUCCCCGGAGCAUCUGUAUGAUUCAGAAGUACAACCACGAUGGGGAAGCAGGUCGGCUGGAGGCUUUUGGCCAAGGGGAAAGUGUCCUAAAGGAACCCAAGUACCAGGAAGAGCUGGAGGACAGGCUGCAUUUCUACGUGGAGGAAUGUGACUACUUGCAGGGCUUCCAGAUCCUGUGUGACCUGCACGAUGGCUUCUCUGGGGUAGGCGCGAAGGCGGCAGAGCUGCUACAAGAUGAAUAUUCAGGGCGGGGAAUAAUAACCUGGGGCCUGCUACCUGGUCCCUACCAUCGUGGGGAGGCCCAGAGAAACAUCUAUCGUCUAUUAAACACAGCUUUUGGUCUCGUGCACCUGACUGCUCACAGCUCUCUUGUCUGCCCCUUGUCCUUGGGUGGGAGCCUGGGCCUGCGACCCGAGCCACCUGUCAGCUUCCCUUACCUGCAUUAUGAUGCCACUCUGCCCUUCCACUGCAGUGCCAUCCUGGCUACAGCCCUGGACACAGUCACUGUUCCUUAUCGCCUGUGUUCCUCUCCAGUUUCCAUGGUUCAUCUGGCUGACAUGCUGAGCUUCUGUGGGAAAAAGGUGGUGACAGCAGGAGCAAUCAUCCCUUUCCCCUUGGCUCCAGGCCAGUCCCUUCCUGAUUCCCUGAUGCAGUUUGGAGGAGCCACCCCAUGGACCCCACUGUCUGCAUGUGGGGAGCCUUCUGGAACACGUUGCUUUGCCCAGUCAGUGGUGCUGAGGGGUAUAGACAGAGCAUGCCACACAAGCCACAGACUAAUGGUGGUUUUGGCUUUGUUCUGGCAGCCAGCUCACCCCAGGGACACCYCCACCCUCUGCCCUUCAUGCAUGUACCACUGGGGAAGAAAUCUUGGCUCAGUAUUUACAACAGCAGCAGCCUGGAGUCAUGAGUUCUUCCCAUCUGCUGCUGACUCCCUGCAGGGUGGCUCCUCCUUACCCCCACCUCUUCUCAAGCUGCAGUCCACCGGGUAUGGUUCUGGAUGGUUCCCCCAAGGGAGCAGCAGUGGAGAGCAUCCCAGUGUUUGGGGCACUGUGUUCCUCUUCGUCCCUGCACCAGACCCUGGAAGCCUUGGCCAGAGACCUCACCAAACUCGACUUGCGGCGCUGGGCCAGCUUCAUGGAUGCUGGAGUGGAGCACGAUGACGUAGCAGAGCUGCUGCAGGAGCUACAAAGCCUGGCCCAGUGCUACCAGGGUGGUGACAGCCUCGUGGm6ACUAAAGUUCCCAGUGUGGGAGAAAGGAGCUAGUUUGCAAUAAAAACAGCUGGAUGCAGGAGCCCAGUGUCUUCAUGCAGAGGAGCUCAAUGUCGCGGGm6ACUAGCUACACCAACAUAUGCACUUUUUACAUUUAGAAACACUGUGAUUAGm6ACCACAGAm6ACAAUAAAUAUGUGCCAUCAGACCAAAAAAAAGUAGAGAAAGGAGCUGAACUCCACUCUCGAUGCUACUUACAGAGGm6ACAUCUGUAAAGUCUUCAUAAAAGm6ACCUUGAAUGAUGCCUAGGAUGGCAGAGCCCCUGGGUCCUACUCCAYCCUCCAGCCUUUGUCCUUGUCCUGGCCUCCUGCUCUCCAGAUCUGUAAm6ACUGGGCUCAAGGm6ACUGUACAAGCAGAGUACAACUACCCGCCUCCCCGGUGCCAGGGCGCCUGUUGGGUUUGGUCCUGUGUAGAUGAUUCCCAGAGUCUCAUUCAYCCAGCUCCUCUUCAGACAGAAGGUCCCCAUGGUCAGACAGCUGGUCUGCAUUGCUGGUm6ACUGGUUGCAUCAYCCUCAYCCUCAGAGCUGGCUUCACAGGCAGUGUGGAAGAGCUGCAUGAGUUCUCGAAAAUGGUGGGAAACCUAAGAAAGGAGGAGGGCUGUAUUCACUGAUCCUUAGUAACAUGUUAACAUUUAUGAAGCACUAU
Sequence (MODOMICS CODE ENCODING) AGCGCAGUAUGGCGGGCGGGGCCCGGGAGGUGCUCACACUGCAGUUGGGACAUUUUGCCGGUUUCGUGGGCGCGCACUGGUGGAACCAGCAGGUGAGGUCAGCCGGCAGCUGCCCCCGAGGAGCCCUUCGGGAUCUACAGUCCCGACGUUCAGCCGGCCUGCCUCGUCCUCUCUGCUUCCCCAGGAUGCUGCGCUGGGCCGAGCGACCGAUUCCAAGGAGCCCCCGGGAGAGCUGUGCCCCGACGUCCUGUAUCGUACGGGCCGGACGCUGCACGGCCAGGAGACCUACACGCCGCGACUCAUCCUCAUGGAUCUGAAGGGUAGUUUGAGCUCCCUAAAAGAGGAAGGUGGACUCUACAGGGACAAACAGUUGGAUGCUGCAAUAGCAUGGCAGGGGAAGCUCACCACACACAAAGAGGAACUCUAUCCCAAGAACCCUUAUCUCCAAGACUUUCUGAGUGCAGAGAGGCCAGCAUCAGGGUCUGGUCAGACUUCCUCAGAGUCCAUCUCCAUCCCCGGAGCAUCUGUAUGAUUCAGAAGUACAACCACGAUGGGGAAGCAGGUCGGCUGGAGGCUUUUGGCCAAGGGGAAAGUGUCCUAAAGGAACCCAAGUACCAGGAAGAGCUGGAGGACAGGCUGCAUUUCUACGUGGAGGAAUGUGACUACUUGCAGGGCUUCCAGAUCCUGUGUGACCUGCACGAUGGCUUCUCUGGGGUAGGCGCGAAGGCGGCAGAGCUGCUACAAGAUGAAUAUUCAGGGCGGGGAAUAAUAACCUGGGGCCUGCUACCUGGUCCCUACCAUCGUGGGGAGGCCCAGAGAAACAUCUAUCGUCUAUUAAACACAGCUUUUGGUCUCGUGCACCUGACUGCUCACAGCUCUCUUGUCUGCCCCUUGUCCUUGGGUGGGAGCCUGGGCCUGCGACCCGAGCCACCUGUCAGCUUCCCUUACCUGCAUUAUGAUGCCACUCUGCCCUUCCACUGCAGUGCCAUCCUGGCUACAGCCCUGGACACAGUCACUGUUCCUUAUCGCCUGUGUUCCUCUCCAGUUUCCAUGGUUCAUCUGGCUGACAUGCUGAGCUUCUGUGGGAAAAAGGUGGUGACAGCAGGAGCAAUCAUCCCUUUCCCCUUGGCUCCAGGCCAGUCCCUUCCUGAUUCCCUGAUGCAGUUUGGAGGAGCCACCCCAUGGACCCCACUGUCUGCAUGUGGGGAGCCUUCUGGAACACGUUGCUUUGCCCAGUCAGUGGUGCUGAGGGGUAUAGACAGAGCAUGCCACACAAGCCACAGACUAAUGGUGGUUUUGGCUUUGUUCUGGCAGCCAGCUCACCCCAGGGACACC2000000009UCCACCCUCUGCCCUUCAUGCAUGUACCACUGGGGAAGAAAUCUUGGCUCAGUAUUUACAACAGCAGCAGCCUGGAGUCAUGAGUUCUUCCCAUCUGCUGCUGACUCCCUGCAGGGUGGCUCCUCCUUACCCCCACCUCUUCUCAAGCUGCAGUCCACCGGGUAUGGUUCUGGAUGGUUCCCCCAAGGGAGCAGCAGUGGAGAGCAUCCCAGUGUUUGGGGCACUGUGUUCCUCUUCGUCCCUGCACCAGACCCUGGAAGCCUUGGCCAGAGACCUCACCAAACUCGACUUGCGGCGCUGGGCCAGCUUCAUGGAUGCUGGAGUGGAGCACGAUGACGUAGCAGAGCUGCUGCAGGAGCUACAAAGCCUGGCCCAGUGCUACCAGGGUGGUGACAGCCUCGUGG2000000006ACUAAAGUUCCCAGUGUGGGAGAAAGGAGCUAGUUUGCAAUAAAAACAGCUGGAUGCAGGAGCCCAGUGUCUUCAUGCAGAGGAGCUCAAUGUCGCGGG2000000006ACUAGCUACACCAACAUAUGCACUUUUUACAUUUAGAAACACUGUGAUUAG2000000006ACCACAGA2000000006ACAAUAAAUAUGUGCCAUCAGACCAAAAAAAAGUAGAGAAAGGAGCUGAACUCCACUCUCGAUGCUACUUACAGAGG2000000006ACAUCUGUAAAGUCUUCAUAAAAG2000000006ACCUUGAAUGAUGCCUAGGAUGGCAGAGCCCCUGGGUCCUACUCCA2000000009UCCUCCAGCCUUUGUCCUUGUCCUGGCCUCCUGCUCUCCAGAUCUGUAA2000000006ACUGGGCUCAAGG2000000006ACUGUACAAGCAGAGUACAACUACCCGCCUCCCCGGUGCCAGGGCGCCUGUUGGGUUUGGUCCUGUGUAGAUGAUUCCCAGAGUCUCAUUCA2000000009UCCAGCUCCUCUUCAGACAGAAGGUCCCCAUGGUCAGACAGCUGGUCUGCAUUGCUGGU2000000006ACUGGUUGCAUCA2000000009UCCUCA2000000009UCCUCAGAGCUGGCUUCACAGGCAGUGUGGAAGAGCUGCAUGAGUUCUCGAAAAUGGUGGGAAACCUAAGAAAGGAGGAGGGCUGUAUUCACUGAUCCUUAGUAACAUGUUAACAUUUAUGAAGCACUAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1336 1740 1839 1890 1898 1975 1999 2045 2094 2107 2199 2258 2271 2277
Modification Positions Y m6A m6A m6A m6A m6A m6A Y m6A m6A Y m6A Y Y
Genomic Coordinates 1:155613483:+ 1:155614269:+ 1:155614368:+ 1:155614419:+ 1:155614427:+ 1:155614504:+ 1:155614528:+ 1:155614574:+ 1:155614623:+ 1:155614636:+ 1:155614728:+ 1:155614787:+ 1:155614800:+ 1:155614806:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
3TeAZFYFxgvp
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
dknfVe6BK8aP
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
3TeAZFYFxgvp
6AyXsheySjfx
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
ArijeGVTwYBw
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
iezFbUdmY3A6
JkWoGWVwjNda
6AyXsheySjfx
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
iezFbUdmY3A6
JkWoGWVwjNda