General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000495422
Gene ID:	ENSG00000120656
Gene Name:	TAF12
Sequence (UNICHARACTER ENCODING)	AGUCGGGGAGGGCCGCGCAGUCGGACCGGCUGCUGAGACGAACGCUUCACUGGGGCAGUCUCUGCAUAUCAUGGGGAGAUAGACGCUGCUGCCUGUAGCUUUUGAAAAUGGCUGCCUCUCAUUUCACCGGGCUCACAGCUGUUGCUGAUGUAAUUAAAGAUCUAGACACUCAGAUAGCUUUAAUUGGCCUUGGUCCUCACAGCUCCAAAAAGAAACAGGAUCUCGAUAAGCUCUAUGAGCUGAAGUCCAAAGCUCGGCAGAUUAUGAACCAGUUUGGCCCCUCAGCCCUAAUCAACCUCUCCAAUUUCUCAPCCAUAAAACCGGAACCAGCCAGCACCCCPCCACAAGGCUCCAUGGCCAAUAGUACUGCAGUGGUAAAGAUACCAGGCACUCCUGGGGCAGGAGGUCGUCUUAGCCCUGAAAACAAUCAGGUAUUGACCAAGAAGAAAUUACЖGGACUUAGUAAGAGAAGUGGAUCCUAAUGAGCAGUUGGAUGAAGAUGUGGAGGAGAUGCUGCUGCAGAUUGCUGAUGAUUUUAUCGAGAGUGUGGUGACAGCAGCCUGUCAGCUUGCGCGGCAUCGCAAGUCUAGCACCCUGGAGGUGAAAGAUGUCCAGCUGCAUUUAGAGCGCCAGUGGAACAUGUGGAUCCCAGGAUPUGGCUCUGAAGAAAUCCGACCCUACAAAAAAGCUUGCACCACAGAAGCUCACAAACAGAGAAUGGCAUUGAUCCGGAAAACAACCAAGAAAUAACACACGGAAAGGUCAGGGAAUGGЖCAGCAAUGUAUUUGGAGAUACUUGAGCUGAGAACUCAGCCAUCUCAPCCUUGGAUUUUUUUUUUUAAUGCUPUACAGAGAAGCAUAUAUUUUUUAUUAACAGUGCAGCAAUAUCUAUAAUGЖCUGAGAGGAUCUGCCAAAAGAAUAAAGCCUCCUACCCCAACUUCCGGUCCCUUUUCCCUGCCAUCUCAAAGAGGAGCAAUGUAUCUUCCAGAGAAGAUUUUAUUUGUGGUUUAUUAUAUAAGUGЖCUGAAUAUGGGЖCAAAGCAUUAUGGUCUUUUUGGGUAAGACAGUAUUAGCAGGAUUUGUAAAGGGUUUUGUUUCCUUCUCCCUUCCCCUUUUCCCUGUACUUUGUAAUGUCAGUGUUUAUAUGAAUAUGACUUUCAUUUGCUUUUCCAGAAUAAAGAAGUUAUUAAUCGAAAGACAGGGUACCUUUGAAAUCCCAGAGGGAGUCAGGACAAGCAAGCCUGGAUUGUAGCUCUCUAGUCAGCAGGUGGCAGCAUCGUUAUUCAUUUUGGUGUUUGAGAAAAACUCAGGGAUUUUCCAUCAUUUUACCCCAAGGGAGGCCAUAACAUCAGCAGGAGUUUGAGUCCAGCUUCUCGGCCAUAAGAAUUGAGUAGGGUGACCUUCUCUCACGGCCCUCAACUGAAGAGGCAUCCUUGUUUUGG
Sequence (SHORT NAMES ENCODING)	AGUCGGGGAGGGCCGCGCAGUCGGACCGGCUGCUGAGACGAACGCUUCACUGGGGCAGUCUCUGCAUAUCAUGGGGAGAUAGACGCUGCUGCCUGUAGCUUUUGAAAAUGGCUGCCUCUCAUUUCACCGGGCUCACAGCUGUUGCUGAUGUAAUUAAAGAUCUAGACACUCAGAUAGCUUUAAUUGGCCUUGGUCCUCACAGCUCCAAAAAGAAACAGGAUCUCGAUAAGCUCUAUGAGCUGAAGUCCAAAGCUCGGCAGAUUAUGAACCAGUUUGGCCCCUCAGCCCUAAUCAACCUCUCCAAUUUCUCAYCCAUAAAACCGGAACCAGCCAGCACCCCYCCACAAGGCUCCAUGGCCAAUAGUACUGCAGUGGUAAAGAUACCAGGCACUCCUGGGGCAGGAGGUCGUCUUAGCCCUGAAAACAAUCAGGUAUUGACCAAGAAGAAAUUACm6AGGACUUAGUAAGAGAAGUGGAUCCUAAUGAGCAGUUGGAUGAAGAUGUGGAGGAGAUGCUGCUGCAGAUUGCUGAUGAUUUUAUCGAGAGUGUGGUGACAGCAGCCUGUCAGCUUGCGCGGCAUCGCAAGUCUAGCACCCUGGAGGUGAAAGAUGUCCAGCUGCAUUUAGAGCGCCAGUGGAACAUGUGGAUCCCAGGAUYUGGCUCUGAAGAAAUCCGACCCUACAAAAAAGCUUGCACCACAGAAGCUCACAAACAGAGAAUGGCAUUGAUCCGGAAAACAACCAAGAAAUAACACACGGAAAGGUCAGGGAAUGGm6ACAGCAAUGUAUUUGGAGAUACUUGAGCUGAGAACUCAGCCAUCUCAYCCUUGGAUUUUUUUUUUUAAUGCUYUACAGAGAAGCAUAUAUUUUUUAUUAACAGUGCAGCAAUAUCUAUAAUGm6ACUGAGAGGAUCUGCCAAAAGAAUAAAGCCUCCUACCCCAACUUCCGGUCCCUUUUCCCUGCCAUCUCAAAGAGGAGCAAUGUAUCUUCCAGAGAAGAUUUUAUUUGUGGUUUAUUAUAUAAGUGm6ACUGAAUAUGGGm6ACAAAGCAUUAUGGUCUUUUUGGGUAAGACAGUAUUAGCAGGAUUUGUAAAGGGUUUUGUUUCCUUCUCCCUUCCCCUUUUCCCUGUACUUUGUAAUGUCAGUGUUUAUAUGAAUAUGACUUUCAUUUGCUUUUCCAGAAUAAAGAAGUUAUUAAUCGAAAGACAGGGUACCUUUGAAAUCCCAGAGGGAGUCAGGACAAGCAAGCCUGGAUUGUAGCUCUCUAGUCAGCAGGUGGCAGCAUCGUUAUUCAUUUUGGUGUUUGAGAAAAACUCAGGGAUUUUCCAUCAUUUUACCCCAAGGGAGGCCAUAACAUCAGCAGGAGUUUGAGUCCAGCUUCUCGGCCAUAAGAAUUGAGUAGGGUGACCUUCUCUCACGGCCCUCAACUGAAGAGGCAUCCUUGUUUUGG
Sequence (MODOMICS CODE ENCODING)	AGUCGGGGAGGGCCGCGCAGUCGGACCGGCUGCUGAGACGAACGCUUCACUGGGGCAGUCUCUGCAUAUCAUGGGGAGAUAGACGCUGCUGCCUGUAGCUUUUGAAAAUGGCUGCCUCUCAUUUCACCGGGCUCACAGCUGUUGCUGAUGUAAUUAAAGAUCUAGACACUCAGAUAGCUUUAAUUGGCCUUGGUCCUCACAGCUCCAAAAAGAAACAGGAUCUCGAUAAGCUCUAUGAGCUGAAGUCCAAAGCUCGGCAGAUUAUGAACCAGUUUGGCCCCUCAGCCCUAAUCAACCUCUCCAAUUUCUCA2000000009UCCAUAAAACCGGAACCAGCCAGCACCCC2000000009UCCACAAGGCUCCAUGGCCAAUAGUACUGCAGUGGUAAAGAUACCAGGCACUCCUGGGGCAGGAGGUCGUCUUAGCCCUGAAAACAAUCAGGUAUUGACCAAGAAGAAAUUAC2000000006AGGACUUAGUAAGAGAAGUGGAUCCUAAUGAGCAGUUGGAUGAAGAUGUGGAGGAGAUGCUGCUGCAGAUUGCUGAUGAUUUUAUCGAGAGUGUGGUGACAGCAGCCUGUCAGCUUGCGCGGCAUCGCAAGUCUAGCACCCUGGAGGUGAAAGAUGUCCAGCUGCAUUUAGAGCGCCAGUGGAACAUGUGGAUCCCAGGAU2000000009UUGGCUCUGAAGAAAUCCGACCCUACAAAAAAGCUUGCACCACAGAAGCUCACAAACAGAGAAUGGCAUUGAUCCGGAAAACAACCAAGAAAUAACACACGGAAAGGUCAGGGAAUGG2000000006ACAGCAAUGUAUUUGGAGAUACUUGAGCUGAGAACUCAGCCAUCUCA2000000009UCCUUGGAUUUUUUUUUUUAAUGCU2000000009UUACAGAGAAGCAUAUAUUUUUUAUUAACAGUGCAGCAAUAUCUAUAAUG2000000006ACUGAGAGGAUCUGCCAAAAGAAUAAAGCCUCCUACCCCAACUUCCGGUCCCUUUUCCCUGCCAUCUCAAAGAGGAGCAAUGUAUCUUCCAGAGAAGAUUUUAUUUGUGGUUUAUUAUAUAAGUG2000000006ACUGAAUAUGGG2000000006ACAAAGCAUUAUGGUCUUUUUGGGUAAGACAGUAUUAGCAGGAUUUGUAAAGGGUUUUGUUUCCUUCUCCCUUCCCCUUUUCCCUGUACUUUGUAAUGUCAGUGUUUAUAUGAAUAUGACUUUCAUUUGCUUUUCCAGAAUAAAGAAGUUAUUAAUCGAAAGACAGGGUACCUUUGAAAUCCCAGAGGGAGUCAGGACAAGCAAGCCUGGAUUGUAGCUCUCUAGUCAGCAGGUGGCAGCAUCGUUAUUCAUUUUGGUGUUUGAGAAAAACUCAGGGAUUUUCCAUCAUUUUACCCCAAGGGAGGCCAUAACAUCAGCAGGAGUUUGAGUCCAGCUUCUCGGCCAUAAGAAUUGAGUAGGGUGACCUUCUCUCACGGCCCUCAACUGAAGAGGCAUCCUUGUUUUGG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	312	341	454	655	773	820	845	895	1020	1032
Modification Positions	Y	Y	m6A	Y	m6A	Y	Y	m6A	m6A	m6A
Genomic Coordinates	1:28622033:-	1:28622004:-	1:28618008:-	1:28605430:-	1:28603515:-	1:28603468:-	1:28603443:-	1:28603393:-	1:28603268:-	1:28603256:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm jNkxUQNx8GRd msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	5aTkEfEpX8Xm msuJfBpJvM5H ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8