Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000618193
Gene ID: ENSG00000270882
Gene Name: H4C14
Sequence (UNICHARACTER ENCODING) AUCGGGCUCCAGCGGUCAUGUCCGGCAGAGGAAAGGGCGGAAAAGGCUUAGGCAAAGGGGGCGCUAAGCGCCACCGCAAGGUCUUGAGAGACAACAUUCAGGGCAUCACCAAGCCUGCCAUUCGGCGUCUAGCUCGGCGUGGCGGCGUUAAGCGGAUCUCUGGCCUCAUUUACGAGGAGACCCGCGGUGUGCUGAAGGUGUUCCUGGAGAAUGUGAUUCGGGACGCAGUCACCUACACCGAGCACGCCAAGCGCAAGACCGUCACAGCCAUGGAUGUGGUGUACGCGCUCAAGCGCCAGGGGCGCACCCUGUACGGCUUCGGAGGCUAGGCCGCCGCUCCAGCUUUGCACGUUUCGAUCCCAAAGGCCCUUUUUAGGGCCGACCACUUGCUCAUCUGAGGAGUUGGЖCACUUGACUGCGUAAAGUGCAACAGUAACGAUGUUGGAAGGUAЖCUUUGGCAGUGGGGCGACAAUCGGAUCUGAAGUUAACGGAAAGCUACCGCGGCCCAUAGCGCUCACAGCCGUAAAGЖCUUAAGUCGUUGACCGAAAGCGGCUUUUUCACUUACCUGGGCUUUUUUUUUUUUUUUUUUUUUUUUUAAAGCCUUUAUCGGUAUGAAAGGUUGAAUGCUCUAGGUUUGAGCACUGCUUUCUCGGCUUGCUCUUCUGGUGCAGUAUAGGCACACCUAGAGGGCCACGUCAGUCUUUGCGAUCACCAAAUCUGGUUCUGAGAAAUAGGCACUGGCAAUUUACACAUGCCUUGCUGUGUAAUCUCACUAUAUUUGCUCAGGCAAAGUGGGAGAAGCAGCCUUAGGUUUUCAUUCUAGAGAUGCCGGCUUUCCCACCUGAUCGGCUUAGAGUUCACGAUUGЖCUGUUUUGGGCUUCAUUUCACCCUCUACAUAACAAGCGGGUGGACUAGAUGCCUUAGCAAGGGUCCGUGUUGUGUGGUGUCUCCAGCCACGCACUCAGCUCAAUCUUAGCACAGUUAAAAAAUGCCUUUCUAGCAAGUUAUCUGCCCAGUGCCUGAAAAGUAUCAUUUCUUGUGUUCAAUAAAAAGCCUCCUAAUUUAAUCAAGGЖCCUAUGAGAUAACUGUCUUUUAGUUGUGGCAUUGCAAGGAUACAAAUGCAGAGAUAUUUUAAAGUGAUCCUUCUGUAAGAGUGAACCAACGAUAUGAUCUGAAAGCAACUUCACAGGUAAUUCAGGCUUAUGAUUUUACUGUGUAUGUAUUUGGGAGAAGAAAUUCUGUCAGCUCCCAAAGGAUAAACCAGCAGUUGCUUUAUUGGUCUUCAGAUGUGGCUGCAAACACUUGAGЖCUGAЖCUAAGCUUAAAACACGGUACUUAGCAAUCGGGUUGCCAGCAAAGCACUGGAUGCAAGCCUUGCCUUCCAGAAGCUUACCAGUCGGGUUGCCAGCAAAGCAGUGGAUGCAAGACUUGCCCUCCAGGAGCUUACCAUCACAACGAAGAAGACAAAUAAAUGCAUAAUAUAUAGACGACAUAAAUCCAUACUGUACACAUUUAAGAAUAAACAGUCCAGUAGUAAGAGGCAGUACAUA
Sequence (SHORT NAMES ENCODING) AUCGGGCUCCAGCGGUCAUGUCCGGCAGAGGAAAGGGCGGAAAAGGCUUAGGCAAAGGGGGCGCUAAGCGCCACCGCAAGGUCUUGAGAGACAACAUUCAGGGCAUCACCAAGCCUGCCAUUCGGCGUCUAGCUCGGCGUGGCGGCGUUAAGCGGAUCUCUGGCCUCAUUUACGAGGAGACCCGCGGUGUGCUGAAGGUGUUCCUGGAGAAUGUGAUUCGGGACGCAGUCACCUACACCGAGCACGCCAAGCGCAAGACCGUCACAGCCAUGGAUGUGGUGUACGCGCUCAAGCGCCAGGGGCGCACCCUGUACGGCUUCGGAGGCUAGGCCGCCGCUCCAGCUUUGCACGUUUCGAUCCCAAAGGCCCUUUUUAGGGCCGACCACUUGCUCAUCUGAGGAGUUGGm6ACACUUGACUGCGUAAAGUGCAACAGUAACGAUGUUGGAAGGUAm6ACUUUGGCAGUGGGGCGACAAUCGGAUCUGAAGUUAACGGAAAGCUACCGCGGCCCAUAGCGCUCACAGCCGUAAAGm6ACUUAAGUCGUUGACCGAAAGCGGCUUUUUCACUUACCUGGGCUUUUUUUUUUUUUUUUUUUUUUUUUAAAGCCUUUAUCGGUAUGAAAGGUUGAAUGCUCUAGGUUUGAGCACUGCUUUCUCGGCUUGCUCUUCUGGUGCAGUAUAGGCACACCUAGAGGGCCACGUCAGUCUUUGCGAUCACCAAAUCUGGUUCUGAGAAAUAGGCACUGGCAAUUUACACAUGCCUUGCUGUGUAAUCUCACUAUAUUUGCUCAGGCAAAGUGGGAGAAGCAGCCUUAGGUUUUCAUUCUAGAGAUGCCGGCUUUCCCACCUGAUCGGCUUAGAGUUCACGAUUGm6ACUGUUUUGGGCUUCAUUUCACCCUCUACAUAACAAGCGGGUGGACUAGAUGCCUUAGCAAGGGUCCGUGUUGUGUGGUGUCUCCAGCCACGCACUCAGCUCAAUCUUAGCACAGUUAAAAAAUGCCUUUCUAGCAAGUUAUCUGCCCAGUGCCUGAAAAGUAUCAUUUCUUGUGUUCAAUAAAAAGCCUCCUAAUUUAAUCAAGGm6ACCUAUGAGAUAACUGUCUUUUAGUUGUGGCAUUGCAAGGAUACAAAUGCAGAGAUAUUUUAAAGUGAUCCUUCUGUAAGAGUGAACCAACGAUAUGAUCUGAAAGCAACUUCACAGGUAAUUCAGGCUUAUGAUUUUACUGUGUAUGUAUUUGGGAGAAGAAAUUCUGUCAGCUCCCAAAGGAUAAACCAGCAGUUGCUUUAUUGGUCUUCAGAUGUGGCUGCAAACACUUGAGm6ACUGAm6ACUAAGCUUAAAACACGGUACUUAGCAAUCGGGUUGCCAGCAAAGCACUGGAUGCAAGCCUUGCCUUCCAGAAGCUUACCAGUCGGGUUGCCAGCAAAGCAGUGGAUGCAAGACUUGCCCUCCAGGAGCUUACCAUCACAACGAAGAAGACAAAUAAAUGCAUAAUAUAUAGACGACAUAAAUCCAUACUGUACACAUUUAAGAAUAAACAGUCCAGUAGUAAGAGGCAGUACAUA
Sequence (MODOMICS CODE ENCODING) AUCGGGCUCCAGCGGUCAUGUCCGGCAGAGGAAAGGGCGGAAAAGGCUUAGGCAAAGGGGGCGCUAAGCGCCACCGCAAGGUCUUGAGAGACAACAUUCAGGGCAUCACCAAGCCUGCCAUUCGGCGUCUAGCUCGGCGUGGCGGCGUUAAGCGGAUCUCUGGCCUCAUUUACGAGGAGACCCGCGGUGUGCUGAAGGUGUUCCUGGAGAAUGUGAUUCGGGACGCAGUCACCUACACCGAGCACGCCAAGCGCAAGACCGUCACAGCCAUGGAUGUGGUGUACGCGCUCAAGCGCCAGGGGCGCACCCUGUACGGCUUCGGAGGCUAGGCCGCCGCUCCAGCUUUGCACGUUUCGAUCCCAAAGGCCCUUUUUAGGGCCGACCACUUGCUCAUCUGAGGAGUUGG2000000006ACACUUGACUGCGUAAAGUGCAACAGUAACGAUGUUGGAAGGUA2000000006ACUUUGGCAGUGGGGCGACAAUCGGAUCUGAAGUUAACGGAAAGCUACCGCGGCCCAUAGCGCUCACAGCCGUAAAG2000000006ACUUAAGUCGUUGACCGAAAGCGGCUUUUUCACUUACCUGGGCUUUUUUUUUUUUUUUUUUUUUUUUUAAAGCCUUUAUCGGUAUGAAAGGUUGAAUGCUCUAGGUUUGAGCACUGCUUUCUCGGCUUGCUCUUCUGGUGCAGUAUAGGCACACCUAGAGGGCCACGUCAGUCUUUGCGAUCACCAAAUCUGGUUCUGAGAAAUAGGCACUGGCAAUUUACACAUGCCUUGCUGUGUAAUCUCACUAUAUUUGCUCAGGCAAAGUGGGAGAAGCAGCCUUAGGUUUUCAUUCUAGAGAUGCCGGCUUUCCCACCUGAUCGGCUUAGAGUUCACGAUUG2000000006ACUGUUUUGGGCUUCAUUUCACCCUCUACAUAACAAGCGGGUGGACUAGAUGCCUUAGCAAGGGUCCGUGUUGUGUGGUGUCUCCAGCCACGCACUCAGCUCAAUCUUAGCACAGUUAAAAAAUGCCUUUCUAGCAAGUUAUCUGCCCAGUGCCUGAAAAGUAUCAUUUCUUGUGUUCAAUAAAAAGCCUCCUAAUUUAAUCAAGG2000000006ACCUAUGAGAUAACUGUCUUUUAGUUGUGGCAUUGCAAGGAUACAAAUGCAGAGAUAUUUUAAAGUGAUCCUUCUGUAAGAGUGAACCAACGAUAUGAUCUGAAAGCAACUUCACAGGUAAUUCAGGCUUAUGAUUUUACUGUGUAUGUAUUUGGGAGAAGAAAUUCUGUCAGCUCCCAAAGGAUAAACCAGCAGUUGCUUUAUUGGUCUUCAGAUGUGGCUGCAAACACUUGAG2000000006ACUGA2000000006ACUAAGCUUAAAACACGGUACUUAGCAAUCGGGUUGCCAGCAAAGCACUGGAUGCAAGCCUUGCCUUCCAGAAGCUUACCAGUCGGGUUGCCAGCAAAGCAGUGGAUGCAAGACUUGCCCUCCAGGAGCUUACCAUCACAACGAAGAAGACAAAUAAAUGCAUAAUAUAUAGACGACAUAAAUCCAUACUGUACACAUUUAAGAAUAAACAGUCCAGUAGUAAGAGGCAGUACAUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 407 451 528 866 1072 1307 1312
Modification Positions m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 1:149833074:+ 1:149833118:+ 1:149833195:+ 1:149833533:+ 1:149833739:+ 1:149834244:+ 1:149834249:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
4HMi5ykupT9V
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn