Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000342753
Gene ID: ENSG00000162576
Gene Name: MXRA8
Sequence (UNICHARACTER ENCODING) AUGUCCUCGGACCUUCUUGUCCCUCCAAGGGUGCGGUCACCACCCCUCCCCAGGCCUGACCGGUGAGGGGCUGGGCCUCUGCUCCCACACUGCCCCUCCCCAGCAGGCCAGCAACGAUGGGGGAGGCCAAGGGGCCCGGCAGGAGCCAGAGGGGGCGGUCCCCAGACCGUAGACAGGCCCAGGCCUCCGUGAUGUCACCGCGGGUGCUAAGGAGGGGGAGGGGGUAGGGCUGUUUUUCUGGAGAGAGACUUAGAGCCGAGUGGGACAAAGCCUGGGGCUGGGCGGGGGCCAUGGCGCUGCCAUCCCGAAUCCUGCUUUGGAAACUUGUGCUUCUGCAGAGCUCUGCUGUUCUCCUGCACUCAGCGGUGGAGGAGACGGACGCGGGGCUGUACACCUGCAACCUGCACCAUCACUACUGCCACCUCUACGAGAGCCUGGCCGUCCGCCUGGAGGUCACCGACGGCCCCCCGGCCACCCCCGCCUACUGGGACGGCGAGAAGGAGGUGCUGGCGGUGGCGCGCGGCGCACCCGCGCUUCUGACCUGCGUGAACCGCGGGCACGUGUGGACCGACCGGCACGUGGAGGAGGCUCAACAGGUGGUGCACUGGGACCGGCAGCCGCCCGGGGUCCCGCACGACCGCGCGGACCGCCUGCUGGACCUCUACGCGUCGGGCGAGCGCCGCGCCUACGGGCCCCUUUUUCUGCGCGACCGCGUGGCUGUGGGCGCGGAUGCCUUUGAGCGCGGUGACUUCUCACUGCGUAUCGAGCCGCUGGAGGUCGCCGACGAGGGCACCUACUCCUGCCACCUGCACCACCAUUACUGUGGCCUGCACGAACGCCGCGUCUUCCACCUGACGGUCGCCGAACCCCACGCGGAGCCGCCCCCCCGGGGCUCUCCGGGCAACGGCUCCAGCCACAGCGGCGCCCCAGGCCCAGACCCCACACUGGCGCGCGGCCACAACGUCAUCAAUGUCAUCGUCCCCGAGAGCCGAGCCCACUUCUUCCAGCAGCUGGGCUACGUGCUGGCCACGCUGCUGCUCUUCAUCCUGCUACUGGUCACUGUCCUCCUGGCCGCCCGCAGGCGCCGCGGAGGCUACGAAUACUCGGACCAGAAGUCGGGAAAGUCAAAGGGGAAGGAUGUUAACUUGGCGGAGUUCGCUGUGGCUGCAGGGGACCAGAUGCUUUACAGGAGUGAGGACAUCCAGCUAGAUUACAAAAACAACAUCCUGAAGGAGAGGGCGGAGCUGGCCCACAGCCCCCUGCCUGCCAAGUACAUCGACCUAGACAAAGGGUUCCGGAAGGAGAACUGCAAAUAGGGAGGCCCUGGGCUCCUGGCUGGGCCAGCAGCUGCACCUCUCCUGUCUGUGCUCCUCGGGGCAUCUCCUGAUGCUCCGGGGCUCACCCCCCUUCCAGCGGCUGGUCCCGCUUUCCUGGAAUUUGGCCUGGGCGUAUGCAGAGGCCGCCUCCACACCCCUCUCCCAGGGGCUUGGUGGCAGCAUAGCCCCCACCCCUGCGGCCUUUGCUCACGGGUGGCCCUGCCCACCCCUGGCACAACCAAAAUCCCACUGAUGCCCAUCAUGCCCUCAGACCCUUCUGGGCUCUGCCCGCUGGGGGCCUGAAGACAUUCCUGGAGGЖCACUCCCAUCAGAACCUGGCAGCCCCAAAACUGGGGUCAGCCUCAGGGCAGGAGUCCCACUCCUCCAGGGCUCUGCUCGUCGGGGGCUGGGAGAUGUUCCUGGAGGAGGACACUCCCAUCAGAЖCUUGGCAGCCUUGAAGUUGGGGUCAGCCUCGGCAGGAGUCCCACUCCPCCUGGGGUGCUGCCUGCCACCGAGAGCUCCCCCACCUGUACCACCAUGUGGGЖCUCCAGGCACCAUCUGUUCUCCCCAGGGЖCCUGCUGACUUGAAUGCCAGCCCUUGCUCCUCUGUGUUGCUUUGGGCCACCUGGGGCUGCACCCCUUGCCCUUUCUCUGCCCCAPCCCUACCCUAGCCUUGCUCUCAGCCACCUUGAUAGUCACUGGGCUCCCUGUGACUUCUGACCCUGACACCCCUCCCUUGGЖCUCUGCCUGGGCUGGAGUCUAGGGCUGGGGCUACAUUUGGCUUCUGUACUGGCUGAGGACAGGGGAGGGAGUGAAGUUGGUUUGGGGUGGCCUGUGUUGCCACUCUCAGCACCCCACAUUUGCAUCUGCUGGUGGACCUGCCACCAUCACAAUAAAGUCCCCAUCUGAUUUUUAGA
Sequence (SHORT NAMES ENCODING) AUGUCCUCGGACCUUCUUGUCCCUCCAAGGGUGCGGUCACCACCCCUCCCCAGGCCUGACCGGUGAGGGGCUGGGCCUCUGCUCCCACACUGCCCCUCCCCAGCAGGCCAGCAACGAUGGGGGAGGCCAAGGGGCCCGGCAGGAGCCAGAGGGGGCGGUCCCCAGACCGUAGACAGGCCCAGGCCUCCGUGAUGUCACCGCGGGUGCUAAGGAGGGGGAGGGGGUAGGGCUGUUUUUCUGGAGAGAGACUUAGAGCCGAGUGGGACAAAGCCUGGGGCUGGGCGGGGGCCAUGGCGCUGCCAUCCCGAAUCCUGCUUUGGAAACUUGUGCUUCUGCAGAGCUCUGCUGUUCUCCUGCACUCAGCGGUGGAGGAGACGGACGCGGGGCUGUACACCUGCAACCUGCACCAUCACUACUGCCACCUCUACGAGAGCCUGGCCGUCCGCCUGGAGGUCACCGACGGCCCCCCGGCCACCCCCGCCUACUGGGACGGCGAGAAGGAGGUGCUGGCGGUGGCGCGCGGCGCACCCGCGCUUCUGACCUGCGUGAACCGCGGGCACGUGUGGACCGACCGGCACGUGGAGGAGGCUCAACAGGUGGUGCACUGGGACCGGCAGCCGCCCGGGGUCCCGCACGACCGCGCGGACCGCCUGCUGGACCUCUACGCGUCGGGCGAGCGCCGCGCCUACGGGCCCCUUUUUCUGCGCGACCGCGUGGCUGUGGGCGCGGAUGCCUUUGAGCGCGGUGACUUCUCACUGCGUAUCGAGCCGCUGGAGGUCGCCGACGAGGGCACCUACUCCUGCCACCUGCACCACCAUUACUGUGGCCUGCACGAACGCCGCGUCUUCCACCUGACGGUCGCCGAACCCCACGCGGAGCCGCCCCCCCGGGGCUCUCCGGGCAACGGCUCCAGCCACAGCGGCGCCCCAGGCCCAGACCCCACACUGGCGCGCGGCCACAACGUCAUCAAUGUCAUCGUCCCCGAGAGCCGAGCCCACUUCUUCCAGCAGCUGGGCUACGUGCUGGCCACGCUGCUGCUCUUCAUCCUGCUACUGGUCACUGUCCUCCUGGCCGCCCGCAGGCGCCGCGGAGGCUACGAAUACUCGGACCAGAAGUCGGGAAAGUCAAAGGGGAAGGAUGUUAACUUGGCGGAGUUCGCUGUGGCUGCAGGGGACCAGAUGCUUUACAGGAGUGAGGACAUCCAGCUAGAUUACAAAAACAACAUCCUGAAGGAGAGGGCGGAGCUGGCCCACAGCCCCCUGCCUGCCAAGUACAUCGACCUAGACAAAGGGUUCCGGAAGGAGAACUGCAAAUAGGGAGGCCCUGGGCUCCUGGCUGGGCCAGCAGCUGCACCUCUCCUGUCUGUGCUCCUCGGGGCAUCUCCUGAUGCUCCGGGGCUCACCCCCCUUCCAGCGGCUGGUCCCGCUUUCCUGGAAUUUGGCCUGGGCGUAUGCAGAGGCCGCCUCCACACCCCUCUCCCAGGGGCUUGGUGGCAGCAUAGCCCCCACCCCUGCGGCCUUUGCUCACGGGUGGCCCUGCCCACCCCUGGCACAACCAAAAUCCCACUGAUGCCCAUCAUGCCCUCAGACCCUUCUGGGCUCUGCCCGCUGGGGGCCUGAAGACAUUCCUGGAGGm6ACACUCCCAUCAGAACCUGGCAGCCCCAAAACUGGGGUCAGCCUCAGGGCAGGAGUCCCACUCCUCCAGGGCUCUGCUCGUCGGGGGCUGGGAGAUGUUCCUGGAGGAGGACACUCCCAUCAGAm6ACUUGGCAGCCUUGAAGUUGGGGUCAGCCUCGGCAGGAGUCCCACUCCYCCUGGGGUGCUGCCUGCCACCGAGAGCUCCCCCACCUGUACCACCAUGUGGGm6ACUCCAGGCACCAUCUGUUCUCCCCAGGGm6ACCUGCUGACUUGAAUGCCAGCCCUUGCUCCUCUGUGUUGCUUUGGGCCACCUGGGGCUGCACCCCUUGCCCUUUCUCUGCCCCAYCCCUACCCUAGCCUUGCUCUCAGCCACCUUGAUAGUCACUGGGCUCCCUGUGACUUCUGACCCUGACACCCCUCCCUUGGm6ACUCUGCCUGGGCUGGAGUCUAGGGCUGGGGCUACAUUUGGCUUCUGUACUGGCUGAGGACAGGGGAGGGAGUGAAGUUGGUUUGGGGUGGCCUGUGUUGCCACUCUCAGCACCCCACAUUUGCAUCUGCUGGUGGACCUGCCACCAUCACAAUAAAGUCCCCAUCUGAUUUUUAGA
Sequence (MODOMICS CODE ENCODING) AUGUCCUCGGACCUUCUUGUCCCUCCAAGGGUGCGGUCACCACCCCUCCCCAGGCCUGACCGGUGAGGGGCUGGGCCUCUGCUCCCACACUGCCCCUCCCCAGCAGGCCAGCAACGAUGGGGGAGGCCAAGGGGCCCGGCAGGAGCCAGAGGGGGCGGUCCCCAGACCGUAGACAGGCCCAGGCCUCCGUGAUGUCACCGCGGGUGCUAAGGAGGGGGAGGGGGUAGGGCUGUUUUUCUGGAGAGAGACUUAGAGCCGAGUGGGACAAAGCCUGGGGCUGGGCGGGGGCCAUGGCGCUGCCAUCCCGAAUCCUGCUUUGGAAACUUGUGCUUCUGCAGAGCUCUGCUGUUCUCCUGCACUCAGCGGUGGAGGAGACGGACGCGGGGCUGUACACCUGCAACCUGCACCAUCACUACUGCCACCUCUACGAGAGCCUGGCCGUCCGCCUGGAGGUCACCGACGGCCCCCCGGCCACCCCCGCCUACUGGGACGGCGAGAAGGAGGUGCUGGCGGUGGCGCGCGGCGCACCCGCGCUUCUGACCUGCGUGAACCGCGGGCACGUGUGGACCGACCGGCACGUGGAGGAGGCUCAACAGGUGGUGCACUGGGACCGGCAGCCGCCCGGGGUCCCGCACGACCGCGCGGACCGCCUGCUGGACCUCUACGCGUCGGGCGAGCGCCGCGCCUACGGGCCCCUUUUUCUGCGCGACCGCGUGGCUGUGGGCGCGGAUGCCUUUGAGCGCGGUGACUUCUCACUGCGUAUCGAGCCGCUGGAGGUCGCCGACGAGGGCACCUACUCCUGCCACCUGCACCACCAUUACUGUGGCCUGCACGAACGCCGCGUCUUCCACCUGACGGUCGCCGAACCCCACGCGGAGCCGCCCCCCCGGGGCUCUCCGGGCAACGGCUCCAGCCACAGCGGCGCCCCAGGCCCAGACCCCACACUGGCGCGCGGCCACAACGUCAUCAAUGUCAUCGUCCCCGAGAGCCGAGCCCACUUCUUCCAGCAGCUGGGCUACGUGCUGGCCACGCUGCUGCUCUUCAUCCUGCUACUGGUCACUGUCCUCCUGGCCGCCCGCAGGCGCCGCGGAGGCUACGAAUACUCGGACCAGAAGUCGGGAAAGUCAAAGGGGAAGGAUGUUAACUUGGCGGAGUUCGCUGUGGCUGCAGGGGACCAGAUGCUUUACAGGAGUGAGGACAUCCAGCUAGAUUACAAAAACAACAUCCUGAAGGAGAGGGCGGAGCUGGCCCACAGCCCCCUGCCUGCCAAGUACAUCGACCUAGACAAAGGGUUCCGGAAGGAGAACUGCAAAUAGGGAGGCCCUGGGCUCCUGGCUGGGCCAGCAGCUGCACCUCUCCUGUCUGUGCUCCUCGGGGCAUCUCCUGAUGCUCCGGGGCUCACCCCCCUUCCAGCGGCUGGUCCCGCUUUCCUGGAAUUUGGCCUGGGCGUAUGCAGAGGCCGCCUCCACACCCCUCUCCCAGGGGCUUGGUGGCAGCAUAGCCCCCACCCCUGCGGCCUUUGCUCACGGGUGGCCCUGCCCACCCCUGGCACAACCAAAAUCCCACUGAUGCCCAUCAUGCCCUCAGACCCUUCUGGGCUCUGCCCGCUGGGGGCCUGAAGACAUUCCUGGAGG2000000006ACACUCCCAUCAGAACCUGGCAGCCCCAAAACUGGGGUCAGCCUCAGGGCAGGAGUCCCACUCCUCCAGGGCUCUGCUCGUCGGGGGCUGGGAGAUGUUCCUGGAGGAGGACACUCCCAUCAGA2000000006ACUUGGCAGCCUUGAAGUUGGGGUCAGCCUCGGCAGGAGUCCCACUCC2000000009UCCUGGGGUGCUGCCUGCCACCGAGAGCUCCCCCACCUGUACCACCAUGUGGG2000000006ACUCCAGGCACCAUCUGUUCUCCCCAGGG2000000006ACCUGCUGACUUGAAUGCCAGCCCUUGCUCCUCUGUGUUGCUUUGGGCCACCUGGGGCUGCACCCCUUGCCCUUUCUCUGCCCCA2000000009UCCCUACCCUAGCCUUGCUCUCAGCCACCUUGAUAGUCACUGGGCUCCCUGUGACUUCUGACCCUGACACCCCUCCCUUGG2000000006ACUCUGCCUGGGCUGGAGUCUAGGGCUGGGGCUACAUUUGGCUUCUGUACUGGCUGAGGACAGGGGAGGGAGUGAAGUUGGUUUGGGGUGGCCUGUGUUGCCACUCUCAGCACCCCACAUUUGCAUCUGCUGGUGGACCUGCCACCAUCACAAUAAAGUCCCCAUCUGAUUUUUAGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1635 1759 1807 1860 1889 1974 2055
Modification Positions m6A m6A Y m6A m6A Y m6A
Genomic Coordinates 1:1353285:- 1:1353161:- 1:1353113:- 1:1353060:- 1:1353031:- 1:1352946:- 1:1352865:-
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
S9vNeQQYrhac
BtsJQJ3DteUq
S9vNeQQYrhac
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
5Nnepx5V7yHo
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
aHkqKEJkRYyb
gBgcfFQ5WN9C
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
nfCHyrYzE6fB
BtsJQJ3DteUq
S9vNeQQYrhac