General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000439080
Gene ID:	ENSG00000120948
Gene Name:	TARDBP
Sequence (UNICHARACTER ENCODING)	CЖUUUUGUGGGAGCGAAGCGGUGGCUGGGCUGCGCUUGGGUCCGUCGCUGCUUCGGUGUCCCUGUCGGGCUUCCCAGCAGCGGCCUAGCGGGAAAAGUAAAAGAUGUCUGAAUAUAUUCGGGUAЖCCGAAGAUGAGAACGAUGAGCCCAUUGAAAUACCAUCGGAAGACGAUGGGACGGUGCUGCUCUCCACGGUUACAGCCCAGUUUCCAGGGGCGUGUGGGCUUCGCUACAGGAAUCCAGUGUCUCAGUGUAUGAGAGGUGUCCGGCUGGUAGAAGGAAUUCUGCAUGCCCCAGAUGCUGGCUGGGGAAAUCUGGUGUAUGUUGUCAACUAUCCAAAAGGUCAAGAAAGAUCUUAAGACUGGUCAUUCAAAGGGGUUUGGCUUUGUUCGUUUUACGGAAUAUGAAACACAAGUGAAAGUAAUGUCACAGCGACAUAUGAUAGAUGGACGAUGGUGUGACUGCAAACUUCCUAAUUCUAAGCAAAGCCAAGAUGAGCCUUUGAGAAGCAGAAAAGUGUUUGUGGGGCGCUGUACЖGAGGЖCAUGACUGAGGAUGAGCUGCGGGAGUUCUUCUCUCAGUACGGGGAUGUGAUGGAUGUCUUCAUCCCCAAGCCAUUCAGGGCCUUUGCCUUUGUUACAUUUGCAGAUGAUCAGAUUGCGCAGUCUCUUUGUGGAGAGGACUUGAUCAUUAAAGGAAUCAGCGUUCAUAUAUCCAAUGCCGAACCUAAGCACAAUAGCAAUAGACAGUUAGAAAGAAGUGGAAGAUUUGGUGGUAʍUCCAGGUGGCUUUGGGAAUCAGGGUGGAUPUGGUAAUAGCAGAGGGGGUGGAGCUGGUUUGGGAAACAAUCAAGGUAGUAAUAUGGGUGGUGGGAUGAACUUUGGUGCGUUCAGCAUUAAUCCAGCCAUGAUGGCUGCCGCCCAGGCAGCACUACAGAGCAGUUGGGGUAUGAUGGGCAUGUUAGCCAGCCAGCAGAACCAGUCAGGCCCAUCGGGUAAUAACCAAAACCAAGGCAACAUGCAGAGGGAGCCAAЖCCAGGCCUUCGGUUCUGGAAAUAЖCUCUUAUAGUGGCUCUAAUUCUGGUGCAGCAAUUGGUUGGGGAUCAGCAPCCAAUGCAGGGUCGGGCAGUGGUUUUAAUGGAGGCUUUGGCUCAAGCAUGGAUUCUAAGUCUUCUGGCUGGGGAAUGUAGACAGUGGGGUUGUGGUUGGUUGGUAUAGAAUGGUGGGAAUUCAAAUUUUUCUAAACUCAUGGUAAGUAUAUUGUAAAAUACAUAUGUACUAAGAAUUUUCAAAAUUGGUUUGUUCAGUGUGGAGUAUAUUCAGCAGUAUUUUUGACAUUUUUCUPUAGAAAAAGGAAGAGCUAAAGGAAUUUUAUAAGUUUUGUUACЖUGAAAG
Sequence (SHORT NAMES ENCODING)	Cm6AUUUUGUGGGAGCGAAGCGGUGGCUGGGCUGCGCUUGGGUCCGUCGCUGCUUCGGUGUCCCUGUCGGGCUUCCCAGCAGCGGCCUAGCGGGAAAAGUAAAAGAUGUCUGAAUAUAUUCGGGUAm6ACCGAAGAUGAGAACGAUGAGCCCAUUGAAAUACCAUCGGAAGACGAUGGGACGGUGCUGCUCUCCACGGUUACAGCCCAGUUUCCAGGGGCGUGUGGGCUUCGCUACAGGAAUCCAGUGUCUCAGUGUAUGAGAGGUGUCCGGCUGGUAGAAGGAAUUCUGCAUGCCCCAGAUGCUGGCUGGGGAAAUCUGGUGUAUGUUGUCAACUAUCCAAAAGGUCAAGAAAGAUCUUAAGACUGGUCAUUCAAAGGGGUUUGGCUUUGUUCGUUUUACGGAAUAUGAAACACAAGUGAAAGUAAUGUCACAGCGACAUAUGAUAGAUGGACGAUGGUGUGACUGCAAACUUCCUAAUUCUAAGCAAAGCCAAGAUGAGCCUUUGAGAAGCAGAAAAGUGUUUGUGGGGCGCUGUACm6AGAGGm6ACAUGACUGAGGAUGAGCUGCGGGAGUUCUUCUCUCAGUACGGGGAUGUGAUGGAUGUCUUCAUCCCCAAGCCAUUCAGGGCCUUUGCCUUUGUUACAUUUGCAGAUGAUCAGAUUGCGCAGUCUCUUUGUGGAGAGGACUUGAUCAUUAAAGGAAUCAGCGUUCAUAUAUCCAAUGCCGAACCUAAGCACAAUAGCAAUAGACAGUUAGAAAGAAGUGGAAGAUUUGGUGGUAAmUCCAGGUGGCUUUGGGAAUCAGGGUGGAUYUGGUAAUAGCAGAGGGGGUGGAGCUGGUUUGGGAAACAAUCAAGGUAGUAAUAUGGGUGGUGGGAUGAACUUUGGUGCGUUCAGCAUUAAUCCAGCCAUGAUGGCUGCCGCCCAGGCAGCACUACAGAGCAGUUGGGGUAUGAUGGGCAUGUUAGCCAGCCAGCAGAACCAGUCAGGCCCAUCGGGUAAUAACCAAAACCAAGGCAACAUGCAGAGGGAGCCAAm6ACCAGGCCUUCGGUUCUGGAAAUAm6ACUCUUAUAGUGGCUCUAAUUCUGGUGCAGCAAUUGGUUGGGGAUCAGCAYCCAAUGCAGGGUCGGGCAGUGGUUUUAAUGGAGGCUUUGGCUCAAGCAUGGAUUCUAAGUCUUCUGGCUGGGGAAUGUAGACAGUGGGGUUGUGGUUGGUUGGUAUAGAAUGGUGGGAAUUCAAAUUUUUCUAAACUCAUGGUAAGUAUAUUGUAAAAUACAUAUGUACUAAGAAUUUUCAAAAUUGGUUUGUUCAGUGUGGAGUAUAUUCAGCAGUAUUUUUGACAUUUUUCUYUAGAAAAAGGAAGAGCUAAAGGAAUUUUAUAAGUUUUGUUACm6AUGAAAG
Sequence (MODOMICS CODE ENCODING)	C2000000006AUUUUGUGGGAGCGAAGCGGUGGCUGGGCUGCGCUUGGGUCCGUCGCUGCUUCGGUGUCCCUGUCGGGCUUCCCAGCAGCGGCCUAGCGGGAAAAGUAAAAGAUGUCUGAAUAUAUUCGGGUA2000000006ACCGAAGAUGAGAACGAUGAGCCCAUUGAAAUACCAUCGGAAGACGAUGGGACGGUGCUGCUCUCCACGGUUACAGCCCAGUUUCCAGGGGCGUGUGGGCUUCGCUACAGGAAUCCAGUGUCUCAGUGUAUGAGAGGUGUCCGGCUGGUAGAAGGAAUUCUGCAUGCCCCAGAUGCUGGCUGGGGAAAUCUGGUGUAUGUUGUCAACUAUCCAAAAGGUCAAGAAAGAUCUUAAGACUGGUCAUUCAAAGGGGUUUGGCUUUGUUCGUUUUACGGAAUAUGAAACACAAGUGAAAGUAAUGUCACAGCGACAUAUGAUAGAUGGACGAUGGUGUGACUGCAAACUUCCUAAUUCUAAGCAAAGCCAAGAUGAGCCUUUGAGAAGCAGAAAAGUGUUUGUGGGGCGCUGUAC2000000006AGAGG2000000006ACAUGACUGAGGAUGAGCUGCGGGAGUUCUUCUCUCAGUACGGGGAUGUGAUGGAUGUCUUCAUCCCCAAGCCAUUCAGGGCCUUUGCCUUUGUUACAUUUGCAGAUGAUCAGAUUGCGCAGUCUCUUUGUGGAGAGGACUUGAUCAUUAAAGGAAUCAGCGUUCAUAUAUCCAAUGCCGAACCUAAGCACAAUAGCAAUAGACAGUUAGAAAGAAGUGGAAGAUUUGGUGGUA2000000090AUCCAGGUGGCUUUGGGAAUCAGGGUGGAU2000000009UUGGUAAUAGCAGAGGGGGUGGAGCUGGUUUGGGAAACAAUCAAGGUAGUAAUAUGGGUGGUGGGAUGAACUUUGGUGCGUUCAGCAUUAAUCCAGCCAUGAUGGCUGCCGCCCAGGCAGCACUACAGAGCAGUUGGGGUAUGAUGGGCAUGUUAGCCAGCCAGCAGAACCAGUCAGGCCCAUCGGGUAAUAACCAAAACCAAGGCAACAUGCAGAGGGAGCCAA2000000006ACCAGGCCUUCGGUUCUGGAAAUA2000000006ACUCUUAUAGUGGCUCUAAUUCUGGUGCAGCAAUUGGUUGGGGAUCAGCA2000000009UCCAAUGCAGGGUCGGGCAGUGGUUUUAAUGGAGGCUUUGGCUCAAGCAUGGAUUCUAAGUCUUCUGGCUGGGGAAUGUAGACAGUGGGGUUGUGGUUGGUUGGUAUAGAAUGGUGGGAAUUCAAAUUUUUCUAAACUCAUGGUAAGUAUAUUGUAAAAUACAUAUGUACUAAGAAUUUUCAAAAUUGGUUUGUUCAGUGUGGAGUAUAUUCAGCAGUAUUUUUGACAUUUUUCU2000000009UUAGAAAAAGGAAGAGCUAAAGGAAUUUUAUAAGUUUUGUUAC2000000006AUGAAAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	2	125	536	541	775	805	1030	1054	1104	1339	1382
Modification Positions	m6A	m6A	m6A	m6A	Am	Y	m6A	m6A	Y	Y	m6A
Genomic Coordinates	1:11012654:+	1:11013749:+	1:11020482:+	1:11020487:+	1:11022245:+	1:11022275:+	1:11022500:+	1:11022524:+	1:11022574:+	1:11022809:+	1:11022852:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	8cMbzB4aD5Se ArijeGVTwYBw nfCHyrYzE6fB BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY