General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000371116
Gene ID:	ENSG00000187140
Gene Name:	FOXD3
Sequence (UNICHARACTER ENCODING)	CCUUAAAACGGGACUUUCGACUACCGGGGCUUCGGCGUCCCUGACACCCAGCCCCCUGCCCCCCCGCUACUGUCCCUGCCCGCGCCCUCCCGAGCUGCUCGGCGCCCGGCGUCCCGCGCCCGCCUGGACCGCUCCUGCGCCCCACGCCAGGGCCAGAGGCCGAGGAAGGCGGGCUAAGUGAGGGGGCGCGGCGUGGAGAACCGCCGGGGCCGGGAGCGGUAGCGAGCGCCUAGUACCGAGCGCCAGGGACGGCAGGAGUUCGCGGAGCGCGGCCGCUGGGGGCGGACGGCAGAGCCCGCGCCACGCGAUGCGGGGCCGCCGAGUGUGAGCUGAGCCCAGCGGGCCCCAAGCCACCUGCGGCCCCCUCCCCUCUCCCUGCCCCCCAUCUUUCGGGGGCACUCAAACCCUCUUCCCCUGAGCUCCGUGGCAGCCCCCGAACACCCUCAUCGCCCGCUGCCCCCUCCCCGCCGCCGCUACCAACCCCGAGGAGGGAUGACCCUCUCCGGCGGCGGCAGCGCCAGCGACAUGUCCGGCCAGACGGUGCUGACGGCCGAGGACGUGGЖCAUCGAUGUGGUGGGCGAGGGCGACGACGGGCUGGAAGAGAAGGACAGCGACGCAGGUUGCGAUAGCCCCGCGGGGCCGCCGGAGCUGCGCCUGGACGAGGCGGACGAGGUGCCCCCGGCGGCACCCCAUCACGGЖCAGCCUCAGCCGCCCCACCAGCAGCCCCUGACAUUGCCCAAGGAGGCGGCCGGAGCCGGGGCCGGЖCCGGGGGGCGACGUGGGCGCGCCGGAGGCGGACGGCUGCAAGGGCGGUGUUGGCGGCGAGGAGGGCGGCGCGAGCGGCGGCGGGCCUGGCGCGGGCAGCGGUUCGGCGGGAGGCCUGGCCCCGAGCAAGCCCAAGAЖCAGCCUAGUGAAGCCGCCUUACUCGUACAUCGCGCUCAUCACCAUGGCCAUCCUGCAGAGCCCGCAGAAGAAGCUGACCCUGAGCGGCAUCUGCGAGUUCAUCAGCAACCGCUUCCCCUACUACAGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCACUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACUACUGGЖCCCUGGACCCGCAGUCCGAGGЖCAUGUUCGACAACGGCAGCUUCCUGCGGCGCCGGAAACGCUUCAAGCGCCACCAGCAGGAGCACCUGCGCGAGCAGACGGCGCUCAUGAUGCAGAGCUUCGGCGCUUACAGCCUGGCGGCGGCGGCCGGCGCCGCGGGЖCCCUACGGCCGCCCCUACGGCCUGCACCCUGCGGCGGCGGCCGGUGCCUAUUCGCACCCGGCAGCGGCGGCGGCCGCGGCUGCUGCGGCGGCGCUCCAGUACCCGUACGCGCUGCCGCCGGUGGCACCGGUGCUGCCUCCCGCUGUGCCGCUGCUGCCCUCGGGCGAGCUGGGCCGCAAAGCGGCCGCCUUCGGCUCACAGCUCGGCCCGGGCCUGCAGCUGCAGCUCAAUAGCCUGGGCGCCGCCGCGGCCGCUGCGGGCACAGCGGGCGCCGCGGGCACCACCGCGUCGCUCAUCAAGUCCGAGCCAAGCGCGCGGCCGUCGUUCAGCAUCGAGAACAUCAUAGGUGGGGGCCCCGCGGCUCCUGGGGGCUCGGCGGUGGGCGCUGGGGUCGCCGGCGGCACUGGGGGUUCAGGGGGCGGCAGCACGGCGCAGUCGUUUCUGCGGCCACCCGGGACCGUGCAGUCGGCAGCGCUCAUGGCCACCCACCAACCGCUGUCGCUGAGCCGGACGACUGCCACCAUCGCGCCCAUUCUUAGCGUGCCACUCUCCGGЖCAGUUUCUGCAGCCCGCAGCCUCGGCCGCCGCCGCUGCUGCGGCCGCCGCUCAAGCCAAAUGGCCGGCGCAAUAGGGACGCGCCAAUGGCCGGGACCCAGGGUCCGGCGGCGGCCUCGAGCAACAAAUGCACCUCCAGGCUGCGCGCCCUGUCCCAAGCCCGGUCCCGGUCCCGCUGCCCAAUCCUGGЖCUCUGCCUCUCCCCAAUUUCCUUUCCCCUGAGCCCCCAACGCCUACCUUCCGCGGCCUCCAPCCCCUCGCGCACACCUAAGCUGGUCGAGCAAACUCACCGCGCGCCCGCCGGGGAUAGCUUUCCAUACAGGUAAAACCGAAAACCGAAUUUUCCAAAAAUGCACCCCGACGGCGCCUGCUCUUAGUACCGUGGGGAUGGGAGGGAAAUUCUUUGUAUAUAUUUGUAAAAAAAUUAUUGACUUUCCUUUUGGGGUUUUUAUUUUUUUAAGAAAAAACAAAUUCCGUAGAUUUAGAGCUCUGAACUUUCAUUUUUUUUGAAGGUUCACUCUCCGAAGUUUUAUCUGAGAAAAGAAUGUAUAGAGACGUUGGGAGAUUUUAAAUAUAAAAAAUUUUCAAAAAGGCAAAAAGUGUCAUUCUAUUAUAAAAGUCUGUUUAUAUAUGAAUGAAUAUAUAUGGUAUUCUAAAUGUUAUUCCAUCGUGUUGUACACAACUUUGUAAAUAAAUUUUUAAAAUGCCCA
Sequence (SHORT NAMES ENCODING)	CCUUAAAACGGGACUUUCGACUACCGGGGCUUCGGCGUCCCUGACACCCAGCCCCCUGCCCCCCCGCUACUGUCCCUGCCCGCGCCCUCCCGAGCUGCUCGGCGCCCGGCGUCCCGCGCCCGCCUGGACCGCUCCUGCGCCCCACGCCAGGGCCAGAGGCCGAGGAAGGCGGGCUAAGUGAGGGGGCGCGGCGUGGAGAACCGCCGGGGCCGGGAGCGGUAGCGAGCGCCUAGUACCGAGCGCCAGGGACGGCAGGAGUUCGCGGAGCGCGGCCGCUGGGGGCGGACGGCAGAGCCCGCGCCACGCGAUGCGGGGCCGCCGAGUGUGAGCUGAGCCCAGCGGGCCCCAAGCCACCUGCGGCCCCCUCCCCUCUCCCUGCCCCCCAUCUUUCGGGGGCACUCAAACCCUCUUCCCCUGAGCUCCGUGGCAGCCCCCGAACACCCUCAUCGCCCGCUGCCCCCUCCCCGCCGCCGCUACCAACCCCGAGGAGGGAUGACCCUCUCCGGCGGCGGCAGCGCCAGCGACAUGUCCGGCCAGACGGUGCUGACGGCCGAGGACGUGGm6ACAUCGAUGUGGUGGGCGAGGGCGACGACGGGCUGGAAGAGAAGGACAGCGACGCAGGUUGCGAUAGCCCCGCGGGGCCGCCGGAGCUGCGCCUGGACGAGGCGGACGAGGUGCCCCCGGCGGCACCCCAUCACGGm6ACAGCCUCAGCCGCCCCACCAGCAGCCCCUGACAUUGCCCAAGGAGGCGGCCGGAGCCGGGGCCGGm6ACCGGGGGGCGACGUGGGCGCGCCGGAGGCGGACGGCUGCAAGGGCGGUGUUGGCGGCGAGGAGGGCGGCGCGAGCGGCGGCGGGCCUGGCGCGGGCAGCGGUUCGGCGGGAGGCCUGGCCCCGAGCAAGCCCAAGAm6ACAGCCUAGUGAAGCCGCCUUACUCGUACAUCGCGCUCAUCACCAUGGCCAUCCUGCAGAGCCCGCAGAAGAAGCUGACCCUGAGCGGCAUCUGCGAGUUCAUCAGCAACCGCUUCCCCUACUACAGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCACUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACUACUGGm6ACCCUGGACCCGCAGUCCGAGGm6ACAUGUUCGACAACGGCAGCUUCCUGCGGCGCCGGAAACGCUUCAAGCGCCACCAGCAGGAGCACCUGCGCGAGCAGACGGCGCUCAUGAUGCAGAGCUUCGGCGCUUACAGCCUGGCGGCGGCGGCCGGCGCCGCGGGm6ACCCUACGGCCGCCCCUACGGCCUGCACCCUGCGGCGGCGGCCGGUGCCUAUUCGCACCCGGCAGCGGCGGCGGCCGCGGCUGCUGCGGCGGCGCUCCAGUACCCGUACGCGCUGCCGCCGGUGGCACCGGUGCUGCCUCCCGCUGUGCCGCUGCUGCCCUCGGGCGAGCUGGGCCGCAAAGCGGCCGCCUUCGGCUCACAGCUCGGCCCGGGCCUGCAGCUGCAGCUCAAUAGCCUGGGCGCCGCCGCGGCCGCUGCGGGCACAGCGGGCGCCGCGGGCACCACCGCGUCGCUCAUCAAGUCCGAGCCAAGCGCGCGGCCGUCGUUCAGCAUCGAGAACAUCAUAGGUGGGGGCCCCGCGGCUCCUGGGGGCUCGGCGGUGGGCGCUGGGGUCGCCGGCGGCACUGGGGGUUCAGGGGGCGGCAGCACGGCGCAGUCGUUUCUGCGGCCACCCGGGACCGUGCAGUCGGCAGCGCUCAUGGCCACCCACCAACCGCUGUCGCUGAGCCGGACGACUGCCACCAUCGCGCCCAUUCUUAGCGUGCCACUCUCCGGm6ACAGUUUCUGCAGCCCGCAGCCUCGGCCGCCGCCGCUGCUGCGGCCGCCGCUCAAGCCAAAUGGCCGGCGCAAUAGGGACGCGCCAAUGGCCGGGACCCAGGGUCCGGCGGCGGCCUCGAGCAACAAAUGCACCUCCAGGCUGCGCGCCCUGUCCCAAGCCCGGUCCCGGUCCCGCUGCCCAAUCCUGGm6ACUCUGCCUCUCCCCAAUUUCCUUUCCCCUGAGCCCCCAACGCCUACCUUCCGCGGCCUCCAYCCCCUCGCGCACACCUAAGCUGGUCGAGCAAACUCACCGCGCGCCCGCCGGGGAUAGCUUUCCAUACAGGUAAAACCGAAAACCGAAUUUUCCAAAAAUGCACCCCGACGGCGCCUGCUCUUAGUACCGUGGGGAUGGGAGGGAAAUUCUUUGUAUAUAUUUGUAAAAAAAUUAUUGACUUUCCUUUUGGGGUUUUUAUUUUUUUAAGAAAAAACAAAUUCCGUAGAUUUAGAGCUCUGAACUUUCAUUUUUUUUGAAGGUUCACUCUCCGAAGUUUUAUCUGAGAAAAGAAUGUAUAGAGACGUUGGGAGAUUUUAAAUAUAAAAAAUUUUCAAAAAGGCAAAAAGUGUCAUUCUAUUAUAAAAGUCUGUUUAUAUAUGAAUGAAUAUAUAUGGUAUUCUAAAUGUUAUUCCAUCGUGUUGUACACAACUUUGUAAAUAAAUUUUUAAAAUGCCCA
Sequence (MODOMICS CODE ENCODING)	CCUUAAAACGGGACUUUCGACUACCGGGGCUUCGGCGUCCCUGACACCCAGCCCCCUGCCCCCCCGCUACUGUCCCUGCCCGCGCCCUCCCGAGCUGCUCGGCGCCCGGCGUCCCGCGCCCGCCUGGACCGCUCCUGCGCCCCACGCCAGGGCCAGAGGCCGAGGAAGGCGGGCUAAGUGAGGGGGCGCGGCGUGGAGAACCGCCGGGGCCGGGAGCGGUAGCGAGCGCCUAGUACCGAGCGCCAGGGACGGCAGGAGUUCGCGGAGCGCGGCCGCUGGGGGCGGACGGCAGAGCCCGCGCCACGCGAUGCGGGGCCGCCGAGUGUGAGCUGAGCCCAGCGGGCCCCAAGCCACCUGCGGCCCCCUCCCCUCUCCCUGCCCCCCAUCUUUCGGGGGCACUCAAACCCUCUUCCCCUGAGCUCCGUGGCAGCCCCCGAACACCCUCAUCGCCCGCUGCCCCCUCCCCGCCGCCGCUACCAACCCCGAGGAGGGAUGACCCUCUCCGGCGGCGGCAGCGCCAGCGACAUGUCCGGCCAGACGGUGCUGACGGCCGAGGACGUGG2000000006ACAUCGAUGUGGUGGGCGAGGGCGACGACGGGCUGGAAGAGAAGGACAGCGACGCAGGUUGCGAUAGCCCCGCGGGGCCGCCGGAGCUGCGCCUGGACGAGGCGGACGAGGUGCCCCCGGCGGCACCCCAUCACGG2000000006ACAGCCUCAGCCGCCCCACCAGCAGCCCCUGACAUUGCCCAAGGAGGCGGCCGGAGCCGGGGCCGG2000000006ACCGGGGGGCGACGUGGGCGCGCCGGAGGCGGACGGCUGCAAGGGCGGUGUUGGCGGCGAGGAGGGCGGCGCGAGCGGCGGCGGGCCUGGCGCGGGCAGCGGUUCGGCGGGAGGCCUGGCCCCGAGCAAGCCCAAGA2000000006ACAGCCUAGUGAAGCCGCCUUACUCGUACAUCGCGCUCAUCACCAUGGCCAUCCUGCAGAGCCCGCAGAAGAAGCUGACCCUGAGCGGCAUCUGCGAGUUCAUCAGCAACCGCUUCCCCUACUACAGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCACUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACUACUGG2000000006ACCCUGGACCCGCAGUCCGAGG2000000006ACAUGUUCGACAACGGCAGCUUCCUGCGGCGCCGGAAACGCUUCAAGCGCCACCAGCAGGAGCACCUGCGCGAGCAGACGGCGCUCAUGAUGCAGAGCUUCGGCGCUUACAGCCUGGCGGCGGCGGCCGGCGCCGCGGG2000000006ACCCUACGGCCGCCCCUACGGCCUGCACCCUGCGGCGGCGGCCGGUGCCUAUUCGCACCCGGCAGCGGCGGCGGCCGCGGCUGCUGCGGCGGCGCUCCAGUACCCGUACGCGCUGCCGCCGGUGGCACCGGUGCUGCCUCCCGCUGUGCCGCUGCUGCCCUCGGGCGAGCUGGGCCGCAAAGCGGCCGCCUUCGGCUCACAGCUCGGCCCGGGCCUGCAGCUGCAGCUCAAUAGCCUGGGCGCCGCCGCGGCCGCUGCGGGCACAGCGGGCGCCGCGGGCACCACCGCGUCGCUCAUCAAGUCCGAGCCAAGCGCGCGGCCGUCGUUCAGCAUCGAGAACAUCAUAGGUGGGGGCCCCGCGGCUCCUGGGGGCUCGGCGGUGGGCGCUGGGGUCGCCGGCGGCACUGGGGGUUCAGGGGGCGGCAGCACGGCGCAGUCGUUUCUGCGGCCACCCGGGACCGUGCAGUCGGCAGCGCUCAUGGCCACCCACCAACCGCUGUCGCUGAGCCGGACGACUGCCACCAUCGCGCCCAUUCUUAGCGUGCCACUCUCCGG2000000006ACAGUUUCUGCAGCCCGCAGCCUCGGCCGCCGCCGCUGCUGCGGCCGCCGCUCAAGCCAAAUGGCCGGCGCAAUAGGGACGCGCCAAUGGCCGGGACCCAGGGUCCGGCGGCGGCCUCGAGCAACAAAUGCACCUCCAGGCUGCGCGCCCUGUCCCAAGCCCGGUCCCGGUCCCGCUGCCCAAUCCUGG2000000006ACUCUGCCUCUCCCCAAUUUCCUUUCCCCUGAGCCCCCAACGCCUACCUUCCGCGGCCUCCA2000000009UCCCCUCGCGCACACCUAAGCUGGUCGAGCAAACUCACCGCGCGCCCGCCGGGGAUAGCUUUCCAUACAGGUAAAACCGAAAACCGAAUUUUCCAAAAAUGCACCCCGACGGCGCCUGCUCUUAGUACCGUGGGGAUGGGAGGGAAAUUCUUUGUAUAUAUUUGUAAAAAAAUUAUUGACUUUCCUUUUGGGGUUUUUAUUUUUUUAAGAAAAAACAAAUUCCGUAGAUUUAGAGCUCUGAACUUUCAUUUUUUUUGAAGGUUCACUCUCCGAAGUUUUAUCUGAGAAAAGAAUGUAUAGAGACGUUGGGAGAUUUUAAAUAUAAAAAAUUUUCAAAAAGGCAAAAAGUGUCAUUCUAUUAUAAAAGUCUGUUUAUAUAUGAAUGAAUAUAUAUGGUAUUCUAAAUGUUAUUCCAUCGUGUUGUACACAACUUUGUAAAUAAAUUUUUAAAAUGCCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	563	699	765	902	1138	1160	1299	1854	2043	2105
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	1:63323129:+	1:63323265:+	1:63323331:+	1:63323468:+	1:63323704:+	1:63323726:+	1:63323865:+	1:63324420:+	1:63324609:+	1:63324671:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe VyCX26p5UBRL BkoLW2CBToyL Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8