General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000452143
Gene ID:	ENSG00000162607
Gene Name:	USP1
Sequence (UNICHARACTER ENCODING)	CGGAGGCGGGGCUUACCGCGAGGGCCUCGCUCCGGAAGCCGCACCCUCCGCGGCGUCCCACCGUCGAGGAUUAACAAAACGCCAAACAAGAUUUUAACAGUCGGCAGCGAAAGCGCGCACUCGAGCGCCAAUGAGAGCGGAAGGAGGGGCACCGCGCCUGAGGAACACUCCGUAUGUCGAACAAUGAUUGGCUGGAGCCCACCUUUCUUCUUUUUUGCUAUUAGAUGGGCUUGCUGCUCCCGCCCAUCUAAUUGGCUUUGGUCUAGAUAUAAUUGGUGAUUACЖACUUUCCUCUAUAAAUUAЖCUCUUGACACUCCUUGGGAUUUGAAGAAAAAAAUGCCUGGUGUCAUACCUAGUGAAAGUAAUGGЖCUUUCAAGAGGUAGCCCUUCAAAGAAAAACAGЖCUUUCCUUAAAGUUUUUUCAGAAAAAGGAAACUAAGAGAGCUUUGGAUUUCACAGAUUCUCAAGAAAAUGAAGAAAAAGCUUCUGAAUAUAGAGCAUCUGAAAUUGAUCAAGUUGUUCCUGCAGCACAGUCUUCACCUAUAAACUGUGAGAAGAGAGAAAACUUGUUACCAUUUGUGGGACUGAAUAAUCUCGGCAAUACUUGCUAUCUUAAUAGUAUACUUCAGGUAUUAUAUUUUUGUCCCGGUUUUAAAUCUGGAGUAAAGCACUUAUUUAAUAUUAUUUCAAGGAAGAAAGAAGCUCUAAAGGAUGAAGCCAAUCAAAAAGACAAGGGAAAUUGCAAAGAAGAUUCUUUGGCAAGUUAUGAAUUGAUAUGCAGUUUACAGUCCUUAAUCAUUUCGGUUGAЖCAGCUCCAGGCUAGUUUUCUCUUAAAUCCAGAGAAAUAUACUGAUGAЖCUUGCCACUCAGCCAAGGCGACUGCUUAЖCACACUGAGG
Sequence (SHORT NAMES ENCODING)	CGGAGGCGGGGCUUACCGCGAGGGCCUCGCUCCGGAAGCCGCACCCUCCGCGGCGUCCCACCGUCGAGGAUUAACAAAACGCCAAACAAGAUUUUAACAGUCGGCAGCGAAAGCGCGCACUCGAGCGCCAAUGAGAGCGGAAGGAGGGGCACCGCGCCUGAGGAACACUCCGUAUGUCGAACAAUGAUUGGCUGGAGCCCACCUUUCUUCUUUUUUGCUAUUAGAUGGGCUUGCUGCUCCCGCCCAUCUAAUUGGCUUUGGUCUAGAUAUAAUUGGUGAUUACm6AACUUUCCUCUAUAAAUUAm6ACUCUUGACACUCCUUGGGAUUUGAAGAAAAAAAUGCCUGGUGUCAUACCUAGUGAAAGUAAUGGm6ACUUUCAAGAGGUAGCCCUUCAAAGAAAAACAGm6ACUUUCCUUAAAGUUUUUUCAGAAAAAGGAAACUAAGAGAGCUUUGGAUUUCACAGAUUCUCAAGAAAAUGAAGAAAAAGCUUCUGAAUAUAGAGCAUCUGAAAUUGAUCAAGUUGUUCCUGCAGCACAGUCUUCACCUAUAAACUGUGAGAAGAGAGAAAACUUGUUACCAUUUGUGGGACUGAAUAAUCUCGGCAAUACUUGCUAUCUUAAUAGUAUACUUCAGGUAUUAUAUUUUUGUCCCGGUUUUAAAUCUGGAGUAAAGCACUUAUUUAAUAUUAUUUCAAGGAAGAAAGAAGCUCUAAAGGAUGAAGCCAAUCAAAAAGACAAGGGAAAUUGCAAAGAAGAUUCUUUGGCAAGUUAUGAAUUGAUAUGCAGUUUACAGUCCUUAAUCAUUUCGGUUGAm6ACAGCUCCAGGCUAGUUUUCUCUUAAAUCCAGAGAAAUAUACUGAUGAm6ACUUGCCACUCAGCCAAGGCGACUGCUUAm6ACACACUGAGG
Sequence (MODOMICS CODE ENCODING)	CGGAGGCGGGGCUUACCGCGAGGGCCUCGCUCCGGAAGCCGCACCCUCCGCGGCGUCCCACCGUCGAGGAUUAACAAAACGCCAAACAAGAUUUUAACAGUCGGCAGCGAAAGCGCGCACUCGAGCGCCAAUGAGAGCGGAAGGAGGGGCACCGCGCCUGAGGAACACUCCGUAUGUCGAACAAUGAUUGGCUGGAGCCCACCUUUCUUCUUUUUUGCUAUUAGAUGGGCUUGCUGCUCCCGCCCAUCUAAUUGGCUUUGGUCUAGAUAUAAUUGGUGAUUAC2000000006AACUUUCCUCUAUAAAUUA2000000006ACUCUUGACACUCCUUGGGAUUUGAAGAAAAAAAUGCCUGGUGUCAUACCUAGUGAAAGUAAUGG2000000006ACUUUCAAGAGGUAGCCCUUCAAAGAAAAACAG2000000006ACUUUCCUUAAAGUUUUUUCAGAAAAAGGAAACUAAGAGAGCUUUGGAUUUCACAGAUUCUCAAGAAAAUGAAGAAAAAGCUUCUGAAUAUAGAGCAUCUGAAAUUGAUCAAGUUGUUCCUGCAGCACAGUCUUCACCUAUAAACUGUGAGAAGAGAGAAAACUUGUUACCAUUUGUGGGACUGAAUAAUCUCGGCAAUACUUGCUAUCUUAAUAGUAUACUUCAGGUAUUAUAUUUUUGUCCCGGUUUUAAAUCUGGAGUAAAGCACUUAUUUAAUAUUAUUUCAAGGAAGAAAGAAGCUCUAAAGGAUGAAGCCAAUCAAAAAGACAAGGGAAAUUGCAAAGAAGAUUCUUUGGCAAGUUAUGAAUUGAUAUGCAGUUUACAGUCCUUAAUCAUUUCGGUUGA2000000006ACAGCUCCAGGCUAGUUUUCUCUUAAAUCCAGAGAAAUAUACUGAUGA2000000006ACUUGCCACUCAGCCAAGGCGACUGCUUA2000000006ACACACUGAGG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	284	303	368	401	806	854	883
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	1:62439816:+	1:62439835:+	1:62439900:+	1:62439933:+	1:62443233:+	1:62443281:+	1:62443310:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	5aTkEfEpX8Xm BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	5aTkEfEpX8Xm msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8