General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000334793
Gene ID:	ENSG00000186564
Gene Name:	FOXD2
Sequence (UNICHARACTER ENCODING)	GCAAAACGCACUCGCCCCAGAGGCAGCGCGGCCGAGCCCGAGCCGCUGCCGGAGCGGAGCCGGAGAGUGGCGGCGGCGGCGGCAGCGGCACCAUGACCCUGGGCAGCUGCUGCUGCGAGAUCAUGUCCUCCGAGAGCUCCCCGGCCGCGCUGUCCGAGGCCGACGCAGACAUAGACGUGGUGGGCGGCGGCAGCGGCGGGGGGGAGCUCCCAGCUCGCUCCGGGCCCCGCGCCCCCCGGGACGUGCUCCCCCACGGCCACGAGCCUCCCGCGGAGGAAGCCGAGGCAGACUUAGCCGAGGACGAGGAGGAGUCUGGUGGCUGCUCGGACGGCGAGCCCCGCGCUCUGGCGUCCCGGGGGGCGGCGGCCGCAGCGGGGAGCCCGGGGCCAGGCGCCGCGGCGGCCCGCGGCGCAGCGGGGCCCGGGCCGGGACCGCCGUCGGGGGGCGCGGCGACGCGGAGCCCGCUGGUGAAGCCGCCCUACUCGUACAUCGCGCUCAUCACCAUGGCCAUCCUGCAGAGCCCCAAGAAGCGGCUGACGUUGAGCGAGAUCUGCGAGUUCAUCAGCGGCCGCUUCCCCUACUACCGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCUCUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACUACUGGЖCGCUGGACCCGGAGUCGGCCGACAUGUUCGACAACGGCAGCUUCCUGCGGCGUCGCAAGCGCUUCAAGCGGCAGCCCCUGCCGCCGCCGCACCCACACCCGCACCCUCACCCGGAGCUGCUGCUGCGUGGCGGGGCCGCGGCGGCGGGGGAUCCCGGCGCUUUCCUGCCCGGCUUCGCUGCCUACGGCGCCUACGGCUACGGCUACGGGCUGGCUCUCCCGGCCUACGGCGCACCCCCGCCGGGGCCGGCCCCGCAUCCGCACCCGCACCCGCACGCCUUCGCUUUCGCCGCGGCAGCCGCCGCCGCUCCUUGCCAGCUGUCGGUACCCCCAGGCCGCGCCGCCGCGCCUCCACCCGGЖCCUCCGACGGCCUCGGUGUUCGCAGGCGCGGGAUCGGCCCCAGCUCCUGCGCCUGCCUCAGGCUCGGGCCCGGGCCCGGGCCCCGCAGGCCUGCCCGCCUUCCUGGGCGCGGAGCUGGGCUGCGCCAAAGCCUUCUACGCGGCGUCCCUGAGUCCUCCCGCAGCCGGCACCGCGGCGGGUCUGCCCACCGCACUUCUGCGCCAGGGCCUCAAGACGGЖCGCGGGCGGUGGUGCAGGCGGCGGGGGCGCCGGGGCAGGGCAGAGGCCUUCCUUCUCUAUAGЖCCACAUCAUGGGCCACGGUGGCGGCGGGGCAGCACCCCCGGGCGCCGGCGAGGGCUCUCCGGGACCGCCAUUCGCGGCAGCCGCGGGUCCUGGGGGCCAAGCCCAGGUCUUGGCCAUGCUGЖCUGCUCCGGCCCUGGCUCCCGUUGCUGGCCACAUUCGCCUCUCGCAUCCCGGGGACGCGCUGCUGUCCUCAGGGUCCCGGUUUGCCAGCAAAGUCGCCGGCCUUAGUGGCUGCCACUUCUGACCGCAGCAGGCCCAGGGCCGGUUAGGUCCGCACUCCUCAGCCUCUCCCGGGAGUUCCUGCGGUCCCAGCGGAЖCUCAGGGAGUCUAUUUAUGAAGUCUCCAGЖCCUUGGGCCGGCACGCGUGACACGGCACUUCAGGCUCCACGCACAGAAUCUCGCAGAUAGUUGGGЖCUAAGCGGGCUCUAUCGCUCAGGGCGACAGGCCCGGGGCUACGCGAAGAAGUCGCAGGCCAAGAUUCUUUACAGUUUGAGAAAUAAAAGCAGGGGGGUGGGGGCUUCGUUUUUUUCCCUGCCUCUGCGCCUCUCGGGGAACACAUUCCGGGAGAGAUGCCUGGCCAGGCUCCACGGAUCCCGCCAGAAACACCAACAGAGGGUCUCCCUUUCUGCCUUUCCCCUCUCACUUCUUCCCCAACGUUGAGACCCUGCUUGUCCAAUAUUAUAAUUUAAAGACAUCUAUUAUCUGCUUUGUGCUUAAAAGAAAAAUUCAACCUUUUUUUUUUUUUUUUUUUUUUUGCUGUUCUCCAAGGAAGUUCGUUUCCUCUGAAGCCUAAACCAGUGUCUACGCAGGCGGAGCUGAACGGAGAGGUGAAGCAGGGGGUCUUUAUAUUCCCUGCAGAAACCCUGGAUCCCACUCCACUGAGGAAAAUCCUUUCUCUUUUGUGUUUGGGUGCUUUUAAAGGAAUUUCUUUCCUUUCCCUUGGCUGGCUGGGUCCAGCCAUCUCCGGCCAGCAACCCUGUCAGUGUUCCACCCUGUCCCAGGCCCUGUGAUAUUUAUUGUGGCUAAAGGCAAUGAGAUUGGGUGGAAGAGAAGGGUCUGGGCCAGGGACUGGAGAGGUGGGGGUGGAGUGGGCAAGGGCACACCCUGUGGCAGGGGGUCCUAUAAUUUUGUGUAAAUAUCUGUACAGCGCGCUGCUCUCGGCGUUCUCUGUCCACUGGGUGUGCAUUGAUUUAAACUUCUCCACUGUGGGGAAGCUCUGUGAAAUCGUCUGAUGGUCUGUGUGGAAGAAAAGAAAAAUCUGUCUGCCGCCUAUUUCCCAUUGGUGUCGAUUGAAUAAAUGUAUGUGAACUUCA
Sequence (SHORT NAMES ENCODING)	GCAAAACGCACUCGCCCCAGAGGCAGCGCGGCCGAGCCCGAGCCGCUGCCGGAGCGGAGCCGGAGAGUGGCGGCGGCGGCGGCAGCGGCACCAUGACCCUGGGCAGCUGCUGCUGCGAGAUCAUGUCCUCCGAGAGCUCCCCGGCCGCGCUGUCCGAGGCCGACGCAGACAUAGACGUGGUGGGCGGCGGCAGCGGCGGGGGGGAGCUCCCAGCUCGCUCCGGGCCCCGCGCCCCCCGGGACGUGCUCCCCCACGGCCACGAGCCUCCCGCGGAGGAAGCCGAGGCAGACUUAGCCGAGGACGAGGAGGAGUCUGGUGGCUGCUCGGACGGCGAGCCCCGCGCUCUGGCGUCCCGGGGGGCGGCGGCCGCAGCGGGGAGCCCGGGGCCAGGCGCCGCGGCGGCCCGCGGCGCAGCGGGGCCCGGGCCGGGACCGCCGUCGGGGGGCGCGGCGACGCGGAGCCCGCUGGUGAAGCCGCCCUACUCGUACAUCGCGCUCAUCACCAUGGCCAUCCUGCAGAGCCCCAAGAAGCGGCUGACGUUGAGCGAGAUCUGCGAGUUCAUCAGCGGCCGCUUCCCCUACUACCGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCUCUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACUACUGGm6ACGCUGGACCCGGAGUCGGCCGACAUGUUCGACAACGGCAGCUUCCUGCGGCGUCGCAAGCGCUUCAAGCGGCAGCCCCUGCCGCCGCCGCACCCACACCCGCACCCUCACCCGGAGCUGCUGCUGCGUGGCGGGGCCGCGGCGGCGGGGGAUCCCGGCGCUUUCCUGCCCGGCUUCGCUGCCUACGGCGCCUACGGCUACGGCUACGGGCUGGCUCUCCCGGCCUACGGCGCACCCCCGCCGGGGCCGGCCCCGCAUCCGCACCCGCACCCGCACGCCUUCGCUUUCGCCGCGGCAGCCGCCGCCGCUCCUUGCCAGCUGUCGGUACCCCCAGGCCGCGCCGCCGCGCCUCCACCCGGm6ACCUCCGACGGCCUCGGUGUUCGCAGGCGCGGGAUCGGCCCCAGCUCCUGCGCCUGCCUCAGGCUCGGGCCCGGGCCCGGGCCCCGCAGGCCUGCCCGCCUUCCUGGGCGCGGAGCUGGGCUGCGCCAAAGCCUUCUACGCGGCGUCCCUGAGUCCUCCCGCAGCCGGCACCGCGGCGGGUCUGCCCACCGCACUUCUGCGCCAGGGCCUCAAGACGGm6ACGCGGGCGGUGGUGCAGGCGGCGGGGGCGCCGGGGCAGGGCAGAGGCCUUCCUUCUCUAUAGm6ACCACAUCAUGGGCCACGGUGGCGGCGGGGCAGCACCCCCGGGCGCCGGCGAGGGCUCUCCGGGACCGCCAUUCGCGGCAGCCGCGGGUCCUGGGGGCCAAGCCCAGGUCUUGGCCAUGCUGm6ACUGCUCCGGCCCUGGCUCCCGUUGCUGGCCACAUUCGCCUCUCGCAUCCCGGGGACGCGCUGCUGUCCUCAGGGUCCCGGUUUGCCAGCAAAGUCGCCGGCCUUAGUGGCUGCCACUUCUGACCGCAGCAGGCCCAGGGCCGGUUAGGUCCGCACUCCUCAGCCUCUCCCGGGAGUUCCUGCGGUCCCAGCGGAm6ACUCAGGGAGUCUAUUUAUGAAGUCUCCAGm6ACCUUGGGCCGGCACGCGUGACACGGCACUUCAGGCUCCACGCACAGAAUCUCGCAGAUAGUUGGGm6ACUAAGCGGGCUCUAUCGCUCAGGGCGACAGGCCCGGGGCUACGCGAAGAAGUCGCAGGCCAAGAUUCUUUACAGUUUGAGAAAUAAAAGCAGGGGGGUGGGGGCUUCGUUUUUUUCCCUGCCUCUGCGCCUCUCGGGGAACACAUUCCGGGAGAGAUGCCUGGCCAGGCUCCACGGAUCCCGCCAGAAACACCAACAGAGGGUCUCCCUUUCUGCCUUUCCCCUCUCACUUCUUCCCCAACGUUGAGACCCUGCUUGUCCAAUAUUAUAAUUUAAAGACAUCUAUUAUCUGCUUUGUGCUUAAAAGAAAAAUUCAACCUUUUUUUUUUUUUUUUUUUUUUUGCUGUUCUCCAAGGAAGUUCGUUUCCUCUGAAGCCUAAACCAGUGUCUACGCAGGCGGAGCUGAACGGAGAGGUGAAGCAGGGGGUCUUUAUAUUCCCUGCAGAAACCCUGGAUCCCACUCCACUGAGGAAAAUCCUUUCUCUUUUGUGUUUGGGUGCUUUUAAAGGAAUUUCUUUCCUUUCCCUUGGCUGGCUGGGUCCAGCCAUCUCCGGCCAGCAACCCUGUCAGUGUUCCACCCUGUCCCAGGCCCUGUGAUAUUUAUUGUGGCUAAAGGCAAUGAGAUUGGGUGGAAGAGAAGGGUCUGGGCCAGGGACUGGAGAGGUGGGGGUGGAGUGGGCAAGGGCACACCCUGUGGCAGGGGGUCCUAUAAUUUUGUGUAAAUAUCUGUACAGCGCGCUGCUCUCGGCGUUCUCUGUCCACUGGGUGUGCAUUGAUUUAAACUUCUCCACUGUGGGGAAGCUCUGUGAAAUCGUCUGAUGGUCUGUGUGGAAGAAAAGAAAAAUCUGUCUGCCGCCUAUUUCCCAUUGGUGUCGAUUGAAUAAAUGUAUGUGAACUUCA
Sequence (MODOMICS CODE ENCODING)	GCAAAACGCACUCGCCCCAGAGGCAGCGCGGCCGAGCCCGAGCCGCUGCCGGAGCGGAGCCGGAGAGUGGCGGCGGCGGCGGCAGCGGCACCAUGACCCUGGGCAGCUGCUGCUGCGAGAUCAUGUCCUCCGAGAGCUCCCCGGCCGCGCUGUCCGAGGCCGACGCAGACAUAGACGUGGUGGGCGGCGGCAGCGGCGGGGGGGAGCUCCCAGCUCGCUCCGGGCCCCGCGCCCCCCGGGACGUGCUCCCCCACGGCCACGAGCCUCCCGCGGAGGAAGCCGAGGCAGACUUAGCCGAGGACGAGGAGGAGUCUGGUGGCUGCUCGGACGGCGAGCCCCGCGCUCUGGCGUCCCGGGGGGCGGCGGCCGCAGCGGGGAGCCCGGGGCCAGGCGCCGCGGCGGCCCGCGGCGCAGCGGGGCCCGGGCCGGGACCGCCGUCGGGGGGCGCGGCGACGCGGAGCCCGCUGGUGAAGCCGCCCUACUCGUACAUCGCGCUCAUCACCAUGGCCAUCCUGCAGAGCCCCAAGAAGCGGCUGACGUUGAGCGAGAUCUGCGAGUUCAUCAGCGGCCGCUUCCCCUACUACCGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCUCUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACUACUGG2000000006ACGCUGGACCCGGAGUCGGCCGACAUGUUCGACAACGGCAGCUUCCUGCGGCGUCGCAAGCGCUUCAAGCGGCAGCCCCUGCCGCCGCCGCACCCACACCCGCACCCUCACCCGGAGCUGCUGCUGCGUGGCGGGGCCGCGGCGGCGGGGGAUCCCGGCGCUUUCCUGCCCGGCUUCGCUGCCUACGGCGCCUACGGCUACGGCUACGGGCUGGCUCUCCCGGCCUACGGCGCACCCCCGCCGGGGCCGGCCCCGCAUCCGCACCCGCACCCGCACGCCUUCGCUUUCGCCGCGGCAGCCGCCGCCGCUCCUUGCCAGCUGUCGGUACCCCCAGGCCGCGCCGCCGCGCCUCCACCCGG2000000006ACCUCCGACGGCCUCGGUGUUCGCAGGCGCGGGAUCGGCCCCAGCUCCUGCGCCUGCCUCAGGCUCGGGCCCGGGCCCGGGCCCCGCAGGCCUGCCCGCCUUCCUGGGCGCGGAGCUGGGCUGCGCCAAAGCCUUCUACGCGGCGUCCCUGAGUCCUCCCGCAGCCGGCACCGCGGCGGGUCUGCCCACCGCACUUCUGCGCCAGGGCCUCAAGACGG2000000006ACGCGGGCGGUGGUGCAGGCGGCGGGGGCGCCGGGGCAGGGCAGAGGCCUUCCUUCUCUAUAG2000000006ACCACAUCAUGGGCCACGGUGGCGGCGGGGCAGCACCCCCGGGCGCCGGCGAGGGCUCUCCGGGACCGCCAUUCGCGGCAGCCGCGGGUCCUGGGGGCCAAGCCCAGGUCUUGGCCAUGCUG2000000006ACUGCUCCGGCCCUGGCUCCCGUUGCUGGCCACAUUCGCCUCUCGCAUCCCGGGGACGCGCUGCUGUCCUCAGGGUCCCGGUUUGCCAGCAAAGUCGCCGGCCUUAGUGGCUGCCACUUCUGACCGCAGCAGGCCCAGGGCCGGUUAGGUCCGCACUCCUCAGCCUCUCCCGGGAGUUCCUGCGGUCCCAGCGGA2000000006ACUCAGGGAGUCUAUUUAUGAAGUCUCCAG2000000006ACCUUGGGCCGGCACGCGUGACACGGCACUUCAGGCUCCACGCACAGAAUCUCGCAGAUAGUUGGG2000000006ACUAAGCGGGCUCUAUCGCUCAGGGCGACAGGCCCGGGGCUACGCGAAGAAGUCGCAGGCCAAGAUUCUUUACAGUUUGAGAAAUAAAAGCAGGGGGGUGGGGGCUUCGUUUUUUUCCCUGCCUCUGCGCCUCUCGGGGAACACAUUCCGGGAGAGAUGCCUGGCCAGGCUCCACGGAUCCCGCCAGAAACACCAACAGAGGGUCUCCCUUUCUGCCUUUCCCCUCUCACUUCUUCCCCAACGUUGAGACCCUGCUUGUCCAAUAUUAUAAUUUAAAGACAUCUAUUAUCUGCUUUGUGCUUAAAAGAAAAAUUCAACCUUUUUUUUUUUUUUUUUUUUUUUGCUGUUCUCCAAGGAAGUUCGUUUCCUCUGAAGCCUAAACCAGUGUCUACGCAGGCGGAGCUGAACGGAGAGGUGAAGCAGGGGGUCUUUAUAUUCCCUGCAGAAACCCUGGAUCCCACUCCACUGAGGAAAAUCCUUUCUCUUUUGUGUUUGGGUGCUUUUAAAGGAAUUUCUUUCCUUUCCCUUGGCUGGCUGGGUCCAGCCAUCUCCGGCCAGCAACCCUGUCAGUGUUCCACCCUGUCCCAGGCCCUGUGAUAUUUAUUGUGGCUAAAGGCAAUGAGAUUGGGUGGAAGAGAAGGGUCUGGGCCAGGGACUGGAGAGGUGGGGGUGGAGUGGGCAAGGGCACACCCUGUGGCAGGGGGUCCUAUAAUUUUGUGUAAAUAUCUGUACAGCGCGCUGCUCUCGGCGUUCUCUGUCCACUGGGUGUGCAUUGAUUUAAACUUCUCCACUGUGGGGAAGCUCUGUGAAAUCGUCUGAUGGUCUGUGUGGAAGAAAAGAAAAAUCUGUCUGCCGCCUAUUUCCCAUUGGUGUCGAUUGAAUAAAUGUAUGUGAACUUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	696	1055	1273	1336	1458	1653	1683	1749
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	1:47438739:+	1:47439098:+	1:47439316:+	1:47439379:+	1:47439501:+	1:47439696:+	1:47439726:+	1:47439792:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL