General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000421625
Gene ID:	ENSG00000090686
Gene Name:	USP48
Sequence (UNICHARACTER ENCODING)	GCUCGGGAAAGGGGUUCGGAACCGGUCUAGGCUCAAGUUAAAUCUCCCUCUAAAGAGCCAACACUGGUUUCUUUGGCGACUCGGUUUCUACUCUAAACAGGUCCCGCUCCACAGUCUGGGCGGGCCUGUGUGUGCGUUGAGUAGCCUCUAGCGUGAAAACUUCAUGGUUAAAAGGGAAGUACCGGAGGCAAGAAAUAGCUUUCGAGGCACUGGUUUGUUAGAGUAGUGGUACGUAGUGCGCCGCCCUGAACGGGGGCUGAGACGCUGCUUUUCCAGAAGUGCCAGUGAGGACGUGGCAAGACCGCCUCGGACGUACGCUUCCUCUACCUCAGCCCGUCGGGUUAGGGGCGCGGGAGGCGCAGAGGCUGCUGGGAACGCGCAUGCGCUCAGCGCGGCGGGGAGUCCACCUUUAACGUCCGCGGGCGCGGGGUGUGUCGGGUGUCGACGGCGGCGCUUUGCGGCCGGUCGUGCGGGUCGGGCGCGGGCGGGCGCGGCGGCAGUGGCGCGCACAGGUGAUUGACUGGCCAGCUGCCUGAAGGAGCGCCAGGUCCUCCUUGCUGGCAGGUGGCGAAGCCCAUUGGGGCGGCGGUGCAGACCGCGGCGGCGGCUGCGGCGGUCUGGCUCGGGAGGCGUUCCUGGGGCCAAGGCCAUGGCCCCGCGGCUGCAGCUGGAGAAGGCGGCCUGGCGCUGGGCGGAGACGGUGCGGCCCGAGGAGGUGUCGCAGGAGCACAUCGAGACCGCUUACCGCAUCUGGCUGGAGCCCUGCAUUCGCGGCGUGUGCAGACGAAACUGCAAAGGAAAUCCGAAUUGCUUGGUUGGUAUUGGUGAGCAUAUUUGGUUAGGAGAAAUAGAUGAAAAUAGUUUUCAUAACAUCGAUGAUCCCAACUGUGAGAGGAGAAAAAAGAACUCAUUUGUGGGCCUGACUAACCUUGGAGCCACUUGUUAUGUCAACACAUUUCUUCAAGUGUGGUUUCUCAACUUGGAGCUUCGGCAGGCACUCUACUUAUGUCCAAGCACUUGUAGUGACUACAUGCUGGGAGACGGCAUCCAAGAAGAAAAAGAUUAUGAGCCUCAAACAAUUUGUGAGCAUCUCCAGUACUUGUUUGCCUUGUUGCAAAACAGUAAUAGGCGAUACAUUGAUCCAUCAGGAUUUGUUAAAGCCUUGGGCCUGGACACUGGACAACAGCAGGAUGCUCAAGAAUUUUCAAAGCUCUPUAUGUCUCUAUUGGAAGAUACUUUGUCUAAACAAAAGAAUCCAGAUGUGCGCAAUAUUGUUCAACAGCAGUUCUGUGGAGAAUAUGCCUAUGUAACUGUUUGCAACCAGUGUGGCAGAGAGUCUAAGCUUUUGUCAAAAUUUUAUGAGCUGGAGUUAAAUAUCCAAGGCCACAAACAGUUAЖCAGAUUGUAUCUCGGAAUUUUUGAAGGAAGAAAAAUUAGAAGGAGACAAUCGCUAUUUUUGCGAGAACUGUCAAAGCAAACAGAAUGCAACAAGAAAGAUUCGACUUCUUAGCCUUCCUUGCACUCUGAACUUGCAGCUAAUGCGUUUUGUCUUUGACAGGCAAACUGGACAUAAGAAAAAGCUGAAUACCUACAUUGGCUUCUCAGAAAUUUUGGAUAUGGAGCCUUAUGUGGAACAUAAAGGUGGGUCCUACGUGUAUGAACUCAGCGCAGUCCUCAUACЖCAGAGGAGUGAGUGCUUAUUCUGGCCACUACAUCGCCCACGUGAAAGAUCCACAGUCUGGUGAAUGGUAUAAGUUUAAUGAUGAAGACAUAGAAAAGAUGGAGGGGAAGAAAUUACAACUAGGGAUUGAGGAAGAUCUAGCAGAACCUUCUAAGUCUCAGACACGUAAACCCAAGUGUGGCAAAGGAACUCAUUGCUCUCGAAAUGCAUAUAUGUUGGUUUAUAGACUGCAAACUCAAGAAAAGCCCAACACUACUGUUCAAGUUCCAGCCUUUCUUCAAGAGCUGGUAGAUCGGGAUAAUUCCAAAUUUGAGGAGUGGUGUAUUGAAAUGGCUGAGAUGCGUAAGCAAAGUGUGGAUAAAGGAAAAGCAAAACACGAAGAGGUUAAGGAGCUGUACCAAAGGUUACCUGCUGGAGCUGGUCUGUAAGAUAUUCUGGGЖCAGCACUGUUGCCAUUAAGUGCCUUGUUUUUUUAUGUUCACAAAUGUAUAUGAAGAAACUUUCUCAAACUUACUCUUUCUAAUAACCCACUAAAGCCAGCUUAAACACUCUAAAAGUACUUUGUAAACCAACAAUAACUUGAUGUGUAGCAUUCCAUAUUAUUUCAUUACGUUGUACUCCUAAAAAUGGGAAGCUGUUAAUAAAUUAUAACAUUUAGGUCAGCACUCUGCAUCCAUGAGUAUUGUAGAUAUUUAUAUUUUGUGAGAUAUUAACUUGUUUAAGAAAAAUCCGAUUGGAUUACUAUGGAAAAAGCAACUUGCCUGUUCUGUUUCUUUGCAUACUUUGUGACCUAACAGUUUUAACAGACAUUCUAUUAUAUGAAUACAGUUUUUUUGAUACUAUUAGAUUAACUUGAAGUUUAAUACCAAAUAUUAUGCUAAGAGUAGAAAAGCUUUCUGCUGACCCCUGAUUUCUUAGAAAUAUCCCACAUAAUCCAGCUUAUCCCUUUUCUGUAUAUGUUUAUUCAGGUUUACCUGAUGUCUCAAAAUGAAACCAAAUUAAGCCUUUUUAAAGGCUGAUGUGCCAUUUGUAUUAAGUUAUCUUUGUCAUUUUAAAGACAUGAAUUCCCCAAGCCUAAUUCCUACUUAAGGAAGAGAGACAAUUUAGUCCUUACUUUAGAAAAUAAAUACUUAAGCAUAA
Sequence (SHORT NAMES ENCODING)	GCUCGGGAAAGGGGUUCGGAACCGGUCUAGGCUCAAGUUAAAUCUCCCUCUAAAGAGCCAACACUGGUUUCUUUGGCGACUCGGUUUCUACUCUAAACAGGUCCCGCUCCACAGUCUGGGCGGGCCUGUGUGUGCGUUGAGUAGCCUCUAGCGUGAAAACUUCAUGGUUAAAAGGGAAGUACCGGAGGCAAGAAAUAGCUUUCGAGGCACUGGUUUGUUAGAGUAGUGGUACGUAGUGCGCCGCCCUGAACGGGGGCUGAGACGCUGCUUUUCCAGAAGUGCCAGUGAGGACGUGGCAAGACCGCCUCGGACGUACGCUUCCUCUACCUCAGCCCGUCGGGUUAGGGGCGCGGGAGGCGCAGAGGCUGCUGGGAACGCGCAUGCGCUCAGCGCGGCGGGGAGUCCACCUUUAACGUCCGCGGGCGCGGGGUGUGUCGGGUGUCGACGGCGGCGCUUUGCGGCCGGUCGUGCGGGUCGGGCGCGGGCGGGCGCGGCGGCAGUGGCGCGCACAGGUGAUUGACUGGCCAGCUGCCUGAAGGAGCGCCAGGUCCUCCUUGCUGGCAGGUGGCGAAGCCCAUUGGGGCGGCGGUGCAGACCGCGGCGGCGGCUGCGGCGGUCUGGCUCGGGAGGCGUUCCUGGGGCCAAGGCCAUGGCCCCGCGGCUGCAGCUGGAGAAGGCGGCCUGGCGCUGGGCGGAGACGGUGCGGCCCGAGGAGGUGUCGCAGGAGCACAUCGAGACCGCUUACCGCAUCUGGCUGGAGCCCUGCAUUCGCGGCGUGUGCAGACGAAACUGCAAAGGAAAUCCGAAUUGCUUGGUUGGUAUUGGUGAGCAUAUUUGGUUAGGAGAAAUAGAUGAAAAUAGUUUUCAUAACAUCGAUGAUCCCAACUGUGAGAGGAGAAAAAAGAACUCAUUUGUGGGCCUGACUAACCUUGGAGCCACUUGUUAUGUCAACACAUUUCUUCAAGUGUGGUUUCUCAACUUGGAGCUUCGGCAGGCACUCUACUUAUGUCCAAGCACUUGUAGUGACUACAUGCUGGGAGACGGCAUCCAAGAAGAAAAAGAUUAUGAGCCUCAAACAAUUUGUGAGCAUCUCCAGUACUUGUUUGCCUUGUUGCAAAACAGUAAUAGGCGAUACAUUGAUCCAUCAGGAUUUGUUAAAGCCUUGGGCCUGGACACUGGACAACAGCAGGAUGCUCAAGAAUUUUCAAAGCUCUYUAUGUCUCUAUUGGAAGAUACUUUGUCUAAACAAAAGAAUCCAGAUGUGCGCAAUAUUGUUCAACAGCAGUUCUGUGGAGAAUAUGCCUAUGUAACUGUUUGCAACCAGUGUGGCAGAGAGUCUAAGCUUUUGUCAAAAUUUUAUGAGCUGGAGUUAAAUAUCCAAGGCCACAAACAGUUAm6ACAGAUUGUAUCUCGGAAUUUUUGAAGGAAGAAAAAUUAGAAGGAGACAAUCGCUAUUUUUGCGAGAACUGUCAAAGCAAACAGAAUGCAACAAGAAAGAUUCGACUUCUUAGCCUUCCUUGCACUCUGAACUUGCAGCUAAUGCGUUUUGUCUUUGACAGGCAAACUGGACAUAAGAAAAAGCUGAAUACCUACAUUGGCUUCUCAGAAAUUUUGGAUAUGGAGCCUUAUGUGGAACAUAAAGGUGGGUCCUACGUGUAUGAACUCAGCGCAGUCCUCAUACm6ACAGAGGAGUGAGUGCUUAUUCUGGCCACUACAUCGCCCACGUGAAAGAUCCACAGUCUGGUGAAUGGUAUAAGUUUAAUGAUGAAGACAUAGAAAAGAUGGAGGGGAAGAAAUUACAACUAGGGAUUGAGGAAGAUCUAGCAGAACCUUCUAAGUCUCAGACACGUAAACCCAAGUGUGGCAAAGGAACUCAUUGCUCUCGAAAUGCAUAUAUGUUGGUUUAUAGACUGCAAACUCAAGAAAAGCCCAACACUACUGUUCAAGUUCCAGCCUUUCUUCAAGAGCUGGUAGAUCGGGAUAAUUCCAAAUUUGAGGAGUGGUGUAUUGAAAUGGCUGAGAUGCGUAAGCAAAGUGUGGAUAAAGGAAAAGCAAAACACGAAGAGGUUAAGGAGCUGUACCAAAGGUUACCUGCUGGAGCUGGUCUGUAAGAUAUUCUGGGm6ACAGCACUGUUGCCAUUAAGUGCCUUGUUUUUUUAUGUUCACAAAUGUAUAUGAAGAAACUUUCUCAAACUUACUCUUUCUAAUAACCCACUAAAGCCAGCUUAAACACUCUAAAAGUACUUUGUAAACCAACAAUAACUUGAUGUGUAGCAUUCCAUAUUAUUUCAUUACGUUGUACUCCUAAAAAUGGGAAGCUGUUAAUAAAUUAUAACAUUUAGGUCAGCACUCUGCAUCCAUGAGUAUUGUAGAUAUUUAUAUUUUGUGAGAUAUUAACUUGUUUAAGAAAAAUCCGAUUGGAUUACUAUGGAAAAAGCAACUUGCCUGUUCUGUUUCUUUGCAUACUUUGUGACCUAACAGUUUUAACAGACAUUCUAUUAUAUGAAUACAGUUUUUUUGAUACUAUUAGAUUAACUUGAAGUUUAAUACCAAAUAUUAUGCUAAGAGUAGAAAAGCUUUCUGCUGACCCCUGAUUUCUUAGAAAUAUCCCACAUAAUCCAGCUUAUCCCUUUUCUGUAUAUGUUUAUUCAGGUUUACCUGAUGUCUCAAAAUGAAACCAAAUUAAGCCUUUUUAAAGGCUGAUGUGCCAUUUGUAUUAAGUUAUCUUUGUCAUUUUAAAGACAUGAAUUCCCCAAGCCUAAUUCCUACUUAAGGAAGAGAGACAAUUUAGUCCUUACUUUAGAAAAUAAAUACUUAAGCAUAA
Sequence (MODOMICS CODE ENCODING)	GCUCGGGAAAGGGGUUCGGAACCGGUCUAGGCUCAAGUUAAAUCUCCCUCUAAAGAGCCAACACUGGUUUCUUUGGCGACUCGGUUUCUACUCUAAACAGGUCCCGCUCCACAGUCUGGGCGGGCCUGUGUGUGCGUUGAGUAGCCUCUAGCGUGAAAACUUCAUGGUUAAAAGGGAAGUACCGGAGGCAAGAAAUAGCUUUCGAGGCACUGGUUUGUUAGAGUAGUGGUACGUAGUGCGCCGCCCUGAACGGGGGCUGAGACGCUGCUUUUCCAGAAGUGCCAGUGAGGACGUGGCAAGACCGCCUCGGACGUACGCUUCCUCUACCUCAGCCCGUCGGGUUAGGGGCGCGGGAGGCGCAGAGGCUGCUGGGAACGCGCAUGCGCUCAGCGCGGCGGGGAGUCCACCUUUAACGUCCGCGGGCGCGGGGUGUGUCGGGUGUCGACGGCGGCGCUUUGCGGCCGGUCGUGCGGGUCGGGCGCGGGCGGGCGCGGCGGCAGUGGCGCGCACAGGUGAUUGACUGGCCAGCUGCCUGAAGGAGCGCCAGGUCCUCCUUGCUGGCAGGUGGCGAAGCCCAUUGGGGCGGCGGUGCAGACCGCGGCGGCGGCUGCGGCGGUCUGGCUCGGGAGGCGUUCCUGGGGCCAAGGCCAUGGCCCCGCGGCUGCAGCUGGAGAAGGCGGCCUGGCGCUGGGCGGAGACGGUGCGGCCCGAGGAGGUGUCGCAGGAGCACAUCGAGACCGCUUACCGCAUCUGGCUGGAGCCCUGCAUUCGCGGCGUGUGCAGACGAAACUGCAAAGGAAAUCCGAAUUGCUUGGUUGGUAUUGGUGAGCAUAUUUGGUUAGGAGAAAUAGAUGAAAAUAGUUUUCAUAACAUCGAUGAUCCCAACUGUGAGAGGAGAAAAAAGAACUCAUUUGUGGGCCUGACUAACCUUGGAGCCACUUGUUAUGUCAACACAUUUCUUCAAGUGUGGUUUCUCAACUUGGAGCUUCGGCAGGCACUCUACUUAUGUCCAAGCACUUGUAGUGACUACAUGCUGGGAGACGGCAUCCAAGAAGAAAAAGAUUAUGAGCCUCAAACAAUUUGUGAGCAUCUCCAGUACUUGUUUGCCUUGUUGCAAAACAGUAAUAGGCGAUACAUUGAUCCAUCAGGAUUUGUUAAAGCCUUGGGCCUGGACACUGGACAACAGCAGGAUGCUCAAGAAUUUUCAAAGCUCU2000000009UUAUGUCUCUAUUGGAAGAUACUUUGUCUAAACAAAAGAAUCCAGAUGUGCGCAAUAUUGUUCAACAGCAGUUCUGUGGAGAAUAUGCCUAUGUAACUGUUUGCAACCAGUGUGGCAGAGAGUCUAAGCUUUUGUCAAAAUUUUAUGAGCUGGAGUUAAAUAUCCAAGGCCACAAACAGUUA2000000006ACAGAUUGUAUCUCGGAAUUUUUGAAGGAAGAAAAAUUAGAAGGAGACAAUCGCUAUUUUUGCGAGAACUGUCAAAGCAAACAGAAUGCAACAAGAAAGAUUCGACUUCUUAGCCUUCCUUGCACUCUGAACUUGCAGCUAAUGCGUUUUGUCUUUGACAGGCAAACUGGACAUAAGAAAAAGCUGAAUACCUACAUUGGCUUCUCAGAAAUUUUGGAUAUGGAGCCUUAUGUGGAACAUAAAGGUGGGUCCUACGUGUAUGAACUCAGCGCAGUCCUCAUAC2000000006ACAGAGGAGUGAGUGCUUAUUCUGGCCACUACAUCGCCCACGUGAAAGAUCCACAGUCUGGUGAAUGGUAUAAGUUUAAUGAUGAAGACAUAGAAAAGAUGGAGGGGAAGAAAUUACAACUAGGGAUUGAGGAAGAUCUAGCAGAACCUUCUAAGUCUCAGACACGUAAACCCAAGUGUGGCAAAGGAACUCAUUGCUCUCGAAAUGCAUAUAUGUUGGUUUAUAGACUGCAAACUCAAGAAAAGCCCAACACUACUGUUCAAGUUCCAGCCUUUCUUCAAGAGCUGGUAGAUCGGGAUAAUUCCAAAUUUGAGGAGUGGUGUAUUGAAAUGGCUGAGAUGCGUAAGCAAAGUGUGGAUAAAGGAAAAGCAAAACACGAAGAGGUUAAGGAGCUGUACCAAAGGUUACCUGCUGGAGCUGGUCUGUAAGAUAUUCUGGG2000000006ACAGCACUGUUGCCAUUAAGUGCCUUGUUUUUUUAUGUUCACAAAUGUAUAUGAAGAAACUUUCUCAAACUUACUCUUUCUAAUAACCCACUAAAGCCAGCUUAAACACUCUAAAAGUACUUUGUAAACCAACAAUAACUUGAUGUGUAGCAUUCCAUAUUAUUUCAUUACGUUGUACUCCUAAAAAUGGGAAGCUGUUAAUAAAUUAUAACAUUUAGGUCAGCACUCUGCAUCCAUGAGUAUUGUAGAUAUUUAUAUUUUGUGAGAUAUUAACUUGUUUAAGAAAAAUCCGAUUGGAUUACUAUGGAAAAAGCAACUUGCCUGUUCUGUUUCUUUGCAUACUUUGUGACCUAACAGUUUUAACAGACAUUCUAUUAUAUGAAUACAGUUUUUUUGAUACUAUUAGAUUAACUUGAAGUUUAAUACCAAAUAUUAUGCUAAGAGUAGAAAAGCUUUCUGCUGACCCCUGAUUUCUUAGAAAUAUCCCACAUAAUCCAGCUUAUCCCUUUUCUGUAUAUGUUUAUUCAGGUUUACCUGAUGUCUCAAAAUGAAACCAAAUUAAGCCUUUUUAAAGGCUGAUGUGCCAUUUGUAUUAAGUUAUCUUUGUCAUUUUAAAGACAUGAAUUCCCCAAGCCUAAUUCCUACUUAAGGAAGAGAGACAAUUUAGUCCUUACUUUAGAAAAUAAAUACUUAAGCAUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1215	1397	1680	2119
Modification Positions	Y	m6A	m6A	m6A
Genomic Coordinates	1:21752626:-	1:21751533:-	1:21736586:-	1:21728550:-
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3	3kRDPWwiRCgi L6w2k2VEv4EY	6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT Lny8GcCeVGc9 BtsJQJ3DteUq