Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000428120
Gene ID: ENSG00000162585
Gene Name: FAAP20
Sequence (UNICHARACTER ENCODING) GGCGCGGAGGCCGCGGCUGGGGUUGAGCCGCCGGAGGCCGCGCCCGGCGGGCGGGCCUUCUGGCGGCCGCCCCUGGUUUCUCCUGGGGGGUGAUGAGCGGGAGCGGCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGAGCUGAUCCUGGAUCACGAGGUGCCUUCACUGCCCGCCUUCCCAGGACAGGAGCCCAGGUGCGGCCCGGAGCCCACUGAAGUCUUCACUGUCGGACCCAAGACCUUUUCCUGGACACCCUUUCCGCCGGACCUGUGGGGCCCGGGCCGUUCCUACCGGCUGCUUCACGGGGCAGGAGGGCACCUGGAAUCCCCCGCCAGGUCCCUGCCCCAGCGCCCGGCACCUGAUCCCUGCAGGGCCCCCAGGGUGGAGCAGCAGCCGUCUGUGGAGGGUGCCGCGGCCCUGCGCAGCUGCCCCAUGUGCCAGAAGGAGUUCGCCCCCAGAAGCAAAAACAGCUCGGGAAUGCGAAGGCACCGGAGUCCAAAGUUGGCAGCCAACAACAACAACAACAAAAGAAAAGGCCGGGCACGGUGGCUCACGCCUGUAAUCCCAGCCCUUUGAGAGGCUGAGGCAGGCUGACCCAGCUGGAUGUUGACAGCCACCUGGCCCAGUGCUUGGCCGAAAGCACAGAAGACGUGACGUGUCUUUCAUGGAUGUGCAAGACUUUGAAUGACCCUGGCAGUCAAGGGUGAGUGUCAUCCACAGGAGAGCCGGCCAGCCACGGGCUCCAUGGGCAGUUGCCCCGCACCACGCCCACGCAGGCCCACUGUGCAGCCCCCAAGUCACCAGAGUUUUCGAGAACCACUUCCAAAAGACACCGUCGUGACCGGAGCCAUUAGCAAAUAUCAGGAUUUUUCAAACCACACUUCAAUACAUCCUUCACUUUAAUUUAUAAAACAAAUUACUGAAUAUAAAAGUCUCCCCUCUGAUGAGCACAGCAUUACUCACAUAUUGUGUACAAGAACGGCCAAACUGGUAACCGGCACGCUACUGGCAACACGGCAGUAUUUAGCCACCAGCCGCACAAUGGGGUGGAGCGGCCCCUGAGUCAUGGAGGCCUGGGGUCUCUGCGCCUGGCCAAGAGGGCUGCGUGGCAAUUUCCACACCUGUGCACCAGGCCUCACUCAGAGGCAUGAGGUGGCGCGACCCCCUCUCCCAGGGAGCUCAGAAGACGGCUCUGCCACACCUGACACCUGGCAGCUGGCAGCCCUGCCUCUAGGAAGCCUCAGCUCUGGACAGCUGUGCCUUCACCUGAGGGGUACUUCAACUCCCGCCCCCACCUGUGUCCCGCUGGCUCCUAAGCUGCCCCCCUACGUGUGGGUUGCGUCUGAGAUGUGGGGCAGGCGCCACUCACGGAAAAAAGGCAUCAGAGGAGCUUCCACAUCAUCGGAЖCAUUUUAUUCCUCAGGЖCGCUACACGCUCACUUUCCUGGCGGAGCAGGUCAGUGCAUCGAGUUCUGUUUCCGUGGAAAAUGUGCACCUUGGAAACCGCAUGACAGCCCCCUCGGCAGGGUCCCCGCGGAUCCGCCGCGACGCAGGCACAGCAGCAAGUUCCUCCAGCACGAAGCUGGCCUGCCCGGGCCCAGGUGUGAGGGЖCUGUUCUGCUCCCAGCAGCGCCCGCUGACGCUUCCCUCUGCGGUCUCGGCGCAAGCGUCUGUCCCUGGCCGCCCUCGGAGCCGUGCCCAGCCUGGCAUGCAUAUGCGGUGGUUAAGGAUACAGUUAAAGGGUCAAUCACGCGUGUCCACGACAGAGACGCACGCGGCCUCACACCGACUCCUCGGUGGЖCAGCAAUAAUGGGUUGAUAUACUCAAAGCCUUCGAЖCUCUGЖCUGGUCGAUCCUCUUUAUGGCAUCCCUGUGGGCAAAGGUGGCAGGGGGGAGGGGGGUGACCGUGUGUUCAUUCCCUUGGGGGAAGCGGAGUCACGUUCGCAUAAGAAUCCUCCCCCAACGCCCACUGGAGAGAUGЖCACCAGGCGGGUGGGЖCUCAAGGGCAGGCUGGGUCACCAGCUGCCCAAGGUGCCGGCCUGCCAUGGGGCUGCCCGAGGGGUGCUCCAGGGACCCGCACCCAGUGGGЖCUCACUCAUCGUCUGGGGUCAGCUGCACGGGCUCGCUGGUGAЖCUGUGUGUCAAAGUUGUCCAGACCGUAGUCGUCUGUGAUCUGUGGCUGGAAUGGAGGGAGCGCCUGCUUCUUCUCCAGCUUGGAAAAACAAUAGGAGAAGGGUCAGCUCCGCGCGGGCAUCAUCCCUACCAGAUUGAGUGUUUUGCACGCACUUCAAUCACAAAAUGAAACAGUGAGAAAGUC
Sequence (SHORT NAMES ENCODING) GGCGCGGAGGCCGCGGCUGGGGUUGAGCCGCCGGAGGCCGCGCCCGGCGGGCGGGCCUUCUGGCGGCCGCCCCUGGUUUCUCCUGGGGGGUGAUGAGCGGGAGCGGCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGAGCUGAUCCUGGAUCACGAGGUGCCUUCACUGCCCGCCUUCCCAGGACAGGAGCCCAGGUGCGGCCCGGAGCCCACUGAAGUCUUCACUGUCGGACCCAAGACCUUUUCCUGGACACCCUUUCCGCCGGACCUGUGGGGCCCGGGCCGUUCCUACCGGCUGCUUCACGGGGCAGGAGGGCACCUGGAAUCCCCCGCCAGGUCCCUGCCCCAGCGCCCGGCACCUGAUCCCUGCAGGGCCCCCAGGGUGGAGCAGCAGCCGUCUGUGGAGGGUGCCGCGGCCCUGCGCAGCUGCCCCAUGUGCCAGAAGGAGUUCGCCCCCAGAAGCAAAAACAGCUCGGGAAUGCGAAGGCACCGGAGUCCAAAGUUGGCAGCCAACAACAACAACAACAAAAGAAAAGGCCGGGCACGGUGGCUCACGCCUGUAAUCCCAGCCCUUUGAGAGGCUGAGGCAGGCUGACCCAGCUGGAUGUUGACAGCCACCUGGCCCAGUGCUUGGCCGAAAGCACAGAAGACGUGACGUGUCUUUCAUGGAUGUGCAAGACUUUGAAUGACCCUGGCAGUCAAGGGUGAGUGUCAUCCACAGGAGAGCCGGCCAGCCACGGGCUCCAUGGGCAGUUGCCCCGCACCACGCCCACGCAGGCCCACUGUGCAGCCCCCAAGUCACCAGAGUUUUCGAGAACCACUUCCAAAAGACACCGUCGUGACCGGAGCCAUUAGCAAAUAUCAGGAUUUUUCAAACCACACUUCAAUACAUCCUUCACUUUAAUUUAUAAAACAAAUUACUGAAUAUAAAAGUCUCCCCUCUGAUGAGCACAGCAUUACUCACAUAUUGUGUACAAGAACGGCCAAACUGGUAACCGGCACGCUACUGGCAACACGGCAGUAUUUAGCCACCAGCCGCACAAUGGGGUGGAGCGGCCCCUGAGUCAUGGAGGCCUGGGGUCUCUGCGCCUGGCCAAGAGGGCUGCGUGGCAAUUUCCACACCUGUGCACCAGGCCUCACUCAGAGGCAUGAGGUGGCGCGACCCCCUCUCCCAGGGAGCUCAGAAGACGGCUCUGCCACACCUGACACCUGGCAGCUGGCAGCCCUGCCUCUAGGAAGCCUCAGCUCUGGACAGCUGUGCCUUCACCUGAGGGGUACUUCAACUCCCGCCCCCACCUGUGUCCCGCUGGCUCCUAAGCUGCCCCCCUACGUGUGGGUUGCGUCUGAGAUGUGGGGCAGGCGCCACUCACGGAAAAAAGGCAUCAGAGGAGCUUCCACAUCAUCGGAm6ACAUUUUAUUCCUCAGGm6ACGCUACACGCUCACUUUCCUGGCGGAGCAGGUCAGUGCAUCGAGUUCUGUUUCCGUGGAAAAUGUGCACCUUGGAAACCGCAUGACAGCCCCCUCGGCAGGGUCCCCGCGGAUCCGCCGCGACGCAGGCACAGCAGCAAGUUCCUCCAGCACGAAGCUGGCCUGCCCGGGCCCAGGUGUGAGGGm6ACUGUUCUGCUCCCAGCAGCGCCCGCUGACGCUUCCCUCUGCGGUCUCGGCGCAAGCGUCUGUCCCUGGCCGCCCUCGGAGCCGUGCCCAGCCUGGCAUGCAUAUGCGGUGGUUAAGGAUACAGUUAAAGGGUCAAUCACGCGUGUCCACGACAGAGACGCACGCGGCCUCACACCGACUCCUCGGUGGm6ACAGCAAUAAUGGGUUGAUAUACUCAAAGCCUUCGAm6ACUCUGm6ACUGGUCGAUCCUCUUUAUGGCAUCCCUGUGGGCAAAGGUGGCAGGGGGGAGGGGGGUGACCGUGUGUUCAUUCCCUUGGGGGAAGCGGAGUCACGUUCGCAUAAGAAUCCUCCCCCAACGCCCACUGGAGAGAUGm6ACACCAGGCGGGUGGGm6ACUCAAGGGCAGGCUGGGUCACCAGCUGCCCAAGGUGCCGGCCUGCCAUGGGGCUGCCCGAGGGGUGCUCCAGGGACCCGCACCCAGUGGGm6ACUCACUCAUCGUCUGGGGUCAGCUGCACGGGCUCGCUGGUGAm6ACUGUGUGUCAAAGUUGUCCAGACCGUAGUCGUCUGUGAUCUGUGGCUGGAAUGGAGGGAGCGCCUGCUUCUUCUCCAGCUUGGAAAAACAAUAGGAGAAGGGUCAGCUCCGCGCGGGCAUCAUCCCUACCAGAUUGAGUGUUUUGCACGCACUUCAAUCACAAAAUGAAACAGUGAGAAAGUC
Sequence (MODOMICS CODE ENCODING) GGCGCGGAGGCCGCGGCUGGGGUUGAGCCGCCGGAGGCCGCGCCCGGCGGGCGGGCCUUCUGGCGGCCGCCCCUGGUUUCUCCUGGGGGGUGAUGAGCGGGAGCGGCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGAGCUGAUCCUGGAUCACGAGGUGCCUUCACUGCCCGCCUUCCCAGGACAGGAGCCCAGGUGCGGCCCGGAGCCCACUGAAGUCUUCACUGUCGGACCCAAGACCUUUUCCUGGACACCCUUUCCGCCGGACCUGUGGGGCCCGGGCCGUUCCUACCGGCUGCUUCACGGGGCAGGAGGGCACCUGGAAUCCCCCGCCAGGUCCCUGCCCCAGCGCCCGGCACCUGAUCCCUGCAGGGCCCCCAGGGUGGAGCAGCAGCCGUCUGUGGAGGGUGCCGCGGCCCUGCGCAGCUGCCCCAUGUGCCAGAAGGAGUUCGCCCCCAGAAGCAAAAACAGCUCGGGAAUGCGAAGGCACCGGAGUCCAAAGUUGGCAGCCAACAACAACAACAACAAAAGAAAAGGCCGGGCACGGUGGCUCACGCCUGUAAUCCCAGCCCUUUGAGAGGCUGAGGCAGGCUGACCCAGCUGGAUGUUGACAGCCACCUGGCCCAGUGCUUGGCCGAAAGCACAGAAGACGUGACGUGUCUUUCAUGGAUGUGCAAGACUUUGAAUGACCCUGGCAGUCAAGGGUGAGUGUCAUCCACAGGAGAGCCGGCCAGCCACGGGCUCCAUGGGCAGUUGCCCCGCACCACGCCCACGCAGGCCCACUGUGCAGCCCCCAAGUCACCAGAGUUUUCGAGAACCACUUCCAAAAGACACCGUCGUGACCGGAGCCAUUAGCAAAUAUCAGGAUUUUUCAAACCACACUUCAAUACAUCCUUCACUUUAAUUUAUAAAACAAAUUACUGAAUAUAAAAGUCUCCCCUCUGAUGAGCACAGCAUUACUCACAUAUUGUGUACAAGAACGGCCAAACUGGUAACCGGCACGCUACUGGCAACACGGCAGUAUUUAGCCACCAGCCGCACAAUGGGGUGGAGCGGCCCCUGAGUCAUGGAGGCCUGGGGUCUCUGCGCCUGGCCAAGAGGGCUGCGUGGCAAUUUCCACACCUGUGCACCAGGCCUCACUCAGAGGCAUGAGGUGGCGCGACCCCCUCUCCCAGGGAGCUCAGAAGACGGCUCUGCCACACCUGACACCUGGCAGCUGGCAGCCCUGCCUCUAGGAAGCCUCAGCUCUGGACAGCUGUGCCUUCACCUGAGGGGUACUUCAACUCCCGCCCCCACCUGUGUCCCGCUGGCUCCUAAGCUGCCCCCCUACGUGUGGGUUGCGUCUGAGAUGUGGGGCAGGCGCCACUCACGGAAAAAAGGCAUCAGAGGAGCUUCCACAUCAUCGGA2000000006ACAUUUUAUUCCUCAGG2000000006ACGCUACACGCUCACUUUCCUGGCGGAGCAGGUCAGUGCAUCGAGUUCUGUUUCCGUGGAAAAUGUGCACCUUGGAAACCGCAUGACAGCCCCCUCGGCAGGGUCCCCGCGGAUCCGCCGCGACGCAGGCACAGCAGCAAGUUCCUCCAGCACGAAGCUGGCCUGCCCGGGCCCAGGUGUGAGGG2000000006ACUGUUCUGCUCCCAGCAGCGCCCGCUGACGCUUCCCUCUGCGGUCUCGGCGCAAGCGUCUGUCCCUGGCCGCCCUCGGAGCCGUGCCCAGCCUGGCAUGCAUAUGCGGUGGUUAAGGAUACAGUUAAAGGGUCAAUCACGCGUGUCCACGACAGAGACGCACGCGGCCUCACACCGACUCCUCGGUGG2000000006ACAGCAAUAAUGGGUUGAUAUACUCAAAGCCUUCGA2000000006ACUCUG2000000006ACUGGUCGAUCCUCUUUAUGGCAUCCCUGUGGGCAAAGGUGGCAGGGGGGAGGGGGGUGACCGUGUGUUCAUUCCCUUGGGGGAAGCGGAGUCACGUUCGCAUAAGAAUCCUCCCCCAACGCCCACUGGAGAGAUG2000000006ACACCAGGCGGGUGGG2000000006ACUCAAGGGCAGGCUGGGUCACCAGCUGCCCAAGGUGCCGGCCUGCCAUGGGGCUGCCCGAGGGGUGCUCCAGGGACCCGCACCCAGUGGG2000000006ACUCACUCAUCGUCUGGGGUCAGCUGCACGGGCUCGCUGGUGA2000000006ACUGUGUGUCAAAGUUGUCCAGACCGUAGUCGUCUGUGAUCUGUGGCUGGAAUGGAGGGAGCGCCUGCUUCUUCUCCAGCUUGGAAAAACAAUAGGAGAAGGGUCAGCUCCGCGCGGGCAUCAUCCCUACCAGAUUGAGUGUUUUGCACGCACUUCAAUCACAAAAUGAAACAGUGAGAAAGUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1411 1428 1613 1802 1838 1844 1980 1996 2087 2130
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 1:2185380:- 1:2185363:- 1:2185178:- 1:2184989:- 1:2184953:- 1:2184947:- 1:2184811:- 1:2184795:- 1:2184704:- 1:2184661:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 4HMi5ykupT9V
5aTkEfEpX8Xm
6AyXsheySjfx
Ap2q43bQLNek
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6AyXsheySjfx
Ap2q43bQLNek
msuJfBpJvM5H
nGifePrmgHfe
VyCX26p5UBRL
WdHxkJGRmFxn
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VyCX26p5UBRL
WdHxkJGRmFxn
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VyCX26p5UBRL
WdHxkJGRmFxn
msuJfBpJvM5H
VyCX26p5UBRL
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9