General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000634712
Gene ID:	ENSG00000218510
Gene Name:	LINC00339
Sequence (UNICHARACTER ENCODING)	GGGCAUGACUUCCGGUUCCCGCGCGGCGCUCCAAAGCUCGGGGAGUGGUGGUCUCCCUUUCCUGGAGUCAUUUGUGGGAGUUAGGGUCUUAUCCUGAUCUUUCCUCGUCCCCCGCUCCCCCGUCCUCCGAGGUGGCAGCUGCGUAGGUGAACGUUCCCCCUGUCCCCUUCCUUCUCCUUCCUAACCCGAGUACGCUUGCUCGCGGCCACAGUGGCUGCCUGCCCCAGGAGCGGGGAGUCCCUGCCUUUGGGGUAGGGAAAUGЖCUGAAAUGUGGGACCUGCGGGCUCCUCGGGCUGACUUGGACCUCACUGCAGCUCUGGAGGUGGACCUCGUCCUGGGACCCUAGAAGCCCAUUUCCGCACUCGGGCUAGGCCUUCGGAGCCGCGGCAGCAUAGUGGGAGGAGUCGGGCUCAGCUCCCCCCCACCACAACCGGGAUUAUUUUUAUCGAAGUCUGGAACGUUUUUUCUUAGAGUUCCAGAAUUGAGЖCUGAAGUGUACCCAGAGACACAAAGAAAUACAGAAGUCCAGAAUGAUCAAAUGAGAUCACUACCCAAUGAAAUGAUGGGCCGAGGAGCCAGAAGUUGUCCUACUACCUGCUUUCCAGGUCCAGAUUCCACGAGAGCCUUCUGGGCUCCCACCAGAGЖCCCUCAGUGAAGЖCUCUGUUGAAGЖCUUUAAGACCAUGCUAGAAAGCCUCCCGGCAGAGGUUCAGGAAGUUCUGCUAUGAGGAUGCAGCUGGCCCCAGGGAUGUCCUCAGGCAUCUCUAGGACCUUGCUGGЖCGGUGGUGGCUGAGACCUGAUAUCCACACAAAGGAGCAGЖCUGUGGAAAUGCUGGUGCAGGAGCAAUUCCAGGCUGUCCUGCCCGAGGAGCUCAGAGCUCAAGCACAGAGAUGUCAGCCUGGAAUCAGAAUCACUGGCUAAGUCUUGCUGCUUGCUUCUUGCUCAGCCUGCAUAUGAGAAGUCAACCAAGCAUUCUCUUGGAUGCAAGAUCCAACUGCACCCAUGGGAAAUCUGAЖCUUCCACUUUCUUUGAGCUUGUCUUUGGUUGUAAUAAGAAUCCAUCAAAACCCAUGUCUGGAUCUCUCUUUGGCUGAGGCAGCUUUAUUUCCUACAGAAAGAGUUUCUCUGUCCUCUUGUUAGGЖCAAUCAGCCUGCUGCUUUGGGCUUUUCCAAGAGCCUAUUUUUCAUCUGCUGGAUGCCUCUUUUUUUUUUUUUUUUUUUUUUUGCACUGUGUGACAUGCUPUAAUAUAUAUAUUUUUUAUGUAUCCAAAGAGGUAAUCAACUPUAЖCUUUCAGAAUUCAUGAAUCUUGGUUUGGUGGCAUGAAUGAAAGGUUAUGUAACCCCACCAGUAЖCUCAUUUGGGGUGCCCUUGAAAUAUUAAAGUUUGGUCCUCAA
Sequence (SHORT NAMES ENCODING)	GGGCAUGACUUCCGGUUCCCGCGCGGCGCUCCAAAGCUCGGGGAGUGGUGGUCUCCCUUUCCUGGAGUCAUUUGUGGGAGUUAGGGUCUUAUCCUGAUCUUUCCUCGUCCCCCGCUCCCCCGUCCUCCGAGGUGGCAGCUGCGUAGGUGAACGUUCCCCCUGUCCCCUUCCUUCUCCUUCCUAACCCGAGUACGCUUGCUCGCGGCCACAGUGGCUGCCUGCCCCAGGAGCGGGGAGUCCCUGCCUUUGGGGUAGGGAAAUGm6ACUGAAAUGUGGGACCUGCGGGCUCCUCGGGCUGACUUGGACCUCACUGCAGCUCUGGAGGUGGACCUCGUCCUGGGACCCUAGAAGCCCAUUUCCGCACUCGGGCUAGGCCUUCGGAGCCGCGGCAGCAUAGUGGGAGGAGUCGGGCUCAGCUCCCCCCCACCACAACCGGGAUUAUUUUUAUCGAAGUCUGGAACGUUUUUUCUUAGAGUUCCAGAAUUGAGm6ACUGAAGUGUACCCAGAGACACAAAGAAAUACAGAAGUCCAGAAUGAUCAAAUGAGAUCACUACCCAAUGAAAUGAUGGGCCGAGGAGCCAGAAGUUGUCCUACUACCUGCUUUCCAGGUCCAGAUUCCACGAGAGCCUUCUGGGCUCCCACCAGAGm6ACCCUCAGUGAAGm6ACUCUGUUGAAGm6ACUUUAAGACCAUGCUAGAAAGCCUCCCGGCAGAGGUUCAGGAAGUUCUGCUAUGAGGAUGCAGCUGGCCCCAGGGAUGUCCUCAGGCAUCUCUAGGACCUUGCUGGm6ACGGUGGUGGCUGAGACCUGAUAUCCACACAAAGGAGCAGm6ACUGUGGAAAUGCUGGUGCAGGAGCAAUUCCAGGCUGUCCUGCCCGAGGAGCUCAGAGCUCAAGCACAGAGAUGUCAGCCUGGAAUCAGAAUCACUGGCUAAGUCUUGCUGCUUGCUUCUUGCUCAGCCUGCAUAUGAGAAGUCAACCAAGCAUUCUCUUGGAUGCAAGAUCCAACUGCACCCAUGGGAAAUCUGAm6ACUUCCACUUUCUUUGAGCUUGUCUUUGGUUGUAAUAAGAAUCCAUCAAAACCCAUGUCUGGAUCUCUCUUUGGCUGAGGCAGCUUUAUUUCCUACAGAAAGAGUUUCUCUGUCCUCUUGUUAGGm6ACAAUCAGCCUGCUGCUUUGGGCUUUUCCAAGAGCCUAUUUUUCAUCUGCUGGAUGCCUCUUUUUUUUUUUUUUUUUUUUUUUGCACUGUGUGACAUGCUYUAAUAUAUAUAUUUUUUAUGUAUCCAAAGAGGUAAUCAACUYUAm6ACUUUCAGAAUUCAUGAAUCUUGGUUUGGUGGCAUGAAUGAAAGGUUAUGUAACCCCACCAGUAm6ACUCAUUUGGGGUGCCCUUGAAAUAUUAAAGUUUGGUCCUCAA
Sequence (MODOMICS CODE ENCODING)	GGGCAUGACUUCCGGUUCCCGCGCGGCGCUCCAAAGCUCGGGGAGUGGUGGUCUCCCUUUCCUGGAGUCAUUUGUGGGAGUUAGGGUCUUAUCCUGAUCUUUCCUCGUCCCCCGCUCCCCCGUCCUCCGAGGUGGCAGCUGCGUAGGUGAACGUUCCCCCUGUCCCCUUCCUUCUCCUUCCUAACCCGAGUACGCUUGCUCGCGGCCACAGUGGCUGCCUGCCCCAGGAGCGGGGAGUCCCUGCCUUUGGGGUAGGGAAAUG2000000006ACUGAAAUGUGGGACCUGCGGGCUCCUCGGGCUGACUUGGACCUCACUGCAGCUCUGGAGGUGGACCUCGUCCUGGGACCCUAGAAGCCCAUUUCCGCACUCGGGCUAGGCCUUCGGAGCCGCGGCAGCAUAGUGGGAGGAGUCGGGCUCAGCUCCCCCCCACCACAACCGGGAUUAUUUUUAUCGAAGUCUGGAACGUUUUUUCUUAGAGUUCCAGAAUUGAG2000000006ACUGAAGUGUACCCAGAGACACAAAGAAAUACAGAAGUCCAGAAUGAUCAAAUGAGAUCACUACCCAAUGAAAUGAUGGGCCGAGGAGCCAGAAGUUGUCCUACUACCUGCUUUCCAGGUCCAGAUUCCACGAGAGCCUUCUGGGCUCCCACCAGAG2000000006ACCCUCAGUGAAG2000000006ACUCUGUUGAAG2000000006ACUUUAAGACCAUGCUAGAAAGCCUCCCGGCAGAGGUUCAGGAAGUUCUGCUAUGAGGAUGCAGCUGGCCCCAGGGAUGUCCUCAGGCAUCUCUAGGACCUUGCUGG2000000006ACGGUGGUGGCUGAGACCUGAUAUCCACACAAAGGAGCAG2000000006ACUGUGGAAAUGCUGGUGCAGGAGCAAUUCCAGGCUGUCCUGCCCGAGGAGCUCAGAGCUCAAGCACAGAGAUGUCAGCCUGGAAUCAGAAUCACUGGCUAAGUCUUGCUGCUUGCUUCUUGCUCAGCCUGCAUAUGAGAAGUCAACCAAGCAUUCUCUUGGAUGCAAGAUCCAACUGCACCCAUGGGAAAUCUGA2000000006ACUUCCACUUUCUUUGAGCUUGUCUUUGGUUGUAAUAAGAAUCCAUCAAAACCCAUGUCUGGAUCUCUCUUUGGCUGAGGCAGCUUUAUUUCCUACAGAAAGAGUUUCUCUGUCCUCUUGUUAGG2000000006ACAAUCAGCCUGCUGCUUUGGGCUUUUCCAAGAGCCUAUUUUUCAUCUGCUGGAUGCCUCUUUUUUUUUUUUUUUUUUUUUUUGCACUGUGUGACAUGCU2000000009UUAAUAUAUAUAUUUUUUAUGUAUCCAAAGAGGUAAUCAACU2000000009UUA2000000006ACUUUCAGAAUUCAUGAAUCUUGGUUUGGUGGCAUGAAUGAAAGGUUAUGUAACCCCACCAGUA2000000006ACUCAUUUGGGGUGCCCUUGAAAUAUUAAAGUUUGGUCCUCAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	263	487	644	657	669	776	816	1012	1137	1237	1279	1282	1346
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y	m6A	m6A
Genomic Coordinates	1:22025760:+	1:22030318:+	1:22030475:+	1:22030488:+	1:22030500:+	1:22030607:+	1:22030647:+	1:22030843:+	1:22030968:+	1:22031068:+	1:22031110:+	1:22031113:+	1:22031177:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL	6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se KTLz8piFYdwC WiQcrNTGZHPT Lny8GcCeVGc9 Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	JkWoGWVwjNda Yfn77uLS5tv8