Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000419242
Gene ID: ENSG00000162600
Gene Name: OMA1
Sequence (UNICHARACTER ENCODING) GUGCGCGCCUGCGCAUAGGUCGGGUCUGCGGUGUCACCGCUUUCGCUUCUGCUUGAGUCAGUCCUCACGGUAGUCAAGUGAAAAAAUGAGCUUCAUCUGUGGAUUGCAGUCUGCUGCUAGAAACCAUGUUUUCUUCCGAUUUAAUUCACUGUCUAACUGGAGAAAAUGUAЖCACAUUAGCAUCCACCUCACGGGGCUGUCAUCAAGUACAAGUUAACCAUAUAGUAAAUAAGUAUCAGGGЖCUGGGAGUAAAUCAGUGUGACAGGUGGAGUUUUCUGCCUGGAAACUUUCAUUUUUAUAGUЖCUUUUAACAACAAAAGAACAGGAGGCCUCUCAAGUACCAAAAGUAAGGAAAUUUGGAGGAUUACCAGCAAAUGUЖCUGUAUGGAAUGAUGCUUUUUCAAGACAGCUGCUAAUAAAAGAAGUUACAGCAGUCCCUAGUCUGUCAGUAUUGCAPCCUCUAAGCCCUGCUUCCAUAAGAGCUAUUAGGAAUUUCCAUACUUCUCCACGGUUUCAAGCUGCUCCGGUUCCUCUCUUGUUGAUGAUUCUUAAACCAGUACAGAAGUUAUUUGCAAUCAUUGUAGGCAGGGGCAUAAGGAAAUGGUGGCAGGCACUUCCPCCUAЖCAAGAAGGAAGUAGUUAAAGAAAAUAUAAGGAAGAAUAAAUGGAAGCUAUUCCUUGGUUUGAGUAGUUUUGGAUUGCUCUUUGUGGUGUUUUAUUUUACUCACCUGGAAGUAAGUCCAAUCACAGGAAGGAGCAAGCUACUAUUAUUGGGGAAAGAACAGUUCAGACUUUUAUCGGAACUGGAAUAUGAAGCAPGGAUGGAAGAAUUUAAAAAUGAUAUGCUAACUGAGAA
Sequence (SHORT NAMES ENCODING) GUGCGCGCCUGCGCAUAGGUCGGGUCUGCGGUGUCACCGCUUUCGCUUCUGCUUGAGUCAGUCCUCACGGUAGUCAAGUGAAAAAAUGAGCUUCAUCUGUGGAUUGCAGUCUGCUGCUAGAAACCAUGUUUUCUUCCGAUUUAAUUCACUGUCUAACUGGAGAAAAUGUAm6ACACAUUAGCAUCCACCUCACGGGGCUGUCAUCAAGUACAAGUUAACCAUAUAGUAAAUAAGUAUCAGGGm6ACUGGGAGUAAAUCAGUGUGACAGGUGGAGUUUUCUGCCUGGAAACUUUCAUUUUUAUAGUm6ACUUUUAACAACAAAAGAACAGGAGGCCUCUCAAGUACCAAAAGUAAGGAAAUUUGGAGGAUUACCAGCAAAUGUm6ACUGUAUGGAAUGAUGCUUUUUCAAGACAGCUGCUAAUAAAAGAAGUUACAGCAGUCCCUAGUCUGUCAGUAUUGCAYCCUCUAAGCCCUGCUUCCAUAAGAGCUAUUAGGAAUUUCCAUACUUCUCCACGGUUUCAAGCUGCUCCGGUUCCUCUCUUGUUGAUGAUUCUUAAACCAGUACAGAAGUUAUUUGCAAUCAUUGUAGGCAGGGGCAUAAGGAAAUGGUGGCAGGCACUUCCYCCUAm6ACAAGAAGGAAGUAGUUAAAGAAAAUAUAAGGAAGAAUAAAUGGAAGCUAUUCCUUGGUUUGAGUAGUUUUGGAUUGCUCUUUGUGGUGUUUUAUUUUACUCACCUGGAAGUAAGUCCAAUCACAGGAAGGAGCAAGCUACUAUUAUUGGGGAAAGAACAGUUCAGACUUUUAUCGGAACUGGAAUAUGAAGCAYGGAUGGAAGAAUUUAAAAAUGAUAUGCUAACUGAGAA
Sequence (MODOMICS CODE ENCODING) GUGCGCGCCUGCGCAUAGGUCGGGUCUGCGGUGUCACCGCUUUCGCUUCUGCUUGAGUCAGUCCUCACGGUAGUCAAGUGAAAAAAUGAGCUUCAUCUGUGGAUUGCAGUCUGCUGCUAGAAACCAUGUUUUCUUCCGAUUUAAUUCACUGUCUAACUGGAGAAAAUGUA2000000006ACACAUUAGCAUCCACCUCACGGGGCUGUCAUCAAGUACAAGUUAACCAUAUAGUAAAUAAGUAUCAGGG2000000006ACUGGGAGUAAAUCAGUGUGACAGGUGGAGUUUUCUGCCUGGAAACUUUCAUUUUUAUAGU2000000006ACUUUUAACAACAAAAGAACAGGAGGCCUCUCAAGUACCAAAAGUAAGGAAAUUUGGAGGAUUACCAGCAAAUGU2000000006ACUGUAUGGAAUGAUGCUUUUUCAAGACAGCUGCUAAUAAAAGAAGUUACAGCAGUCCCUAGUCUGUCAGUAUUGCA2000000009UCCUCUAAGCCCUGCUUCCAUAAGAGCUAUUAGGAAUUUCCAUACUUCUCCACGGUUUCAAGCUGCUCCGGUUCCUCUCUUGUUGAUGAUUCUUAAACCAGUACAGAAGUUAUUUGCAAUCAUUGUAGGCAGGGGCAUAAGGAAAUGGUGGCAGGCACUUCC2000000009UCCUA2000000006ACAAGAAGGAAGUAGUUAAAGAAAAUAUAAGGAAGAAUAAAUGGAAGCUAUUCCUUGGUUUGAGUAGUUUUGGAUUGCUCUUUGUGGUGUUUUAUUUUACUCACCUGGAAGUAAGUCCAAUCACAGGAAGGAGCAAGCUACUAUUAUUGGGGAAAGAACAGUUCAGACUUUUAUCGGAACUGGAAUAUGAAGCA2000000009UGGAUGGAAGAAUUUAAAAAUGAUAUGCUAACUGAGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 171 241 302 377 454 616 621 815
Modification Positions m6A m6A m6A m6A Y Y m6A Y
Genomic Coordinates 1:58539209:- 1:58539139:- 1:58539078:- 1:58539003:- 1:58538926:- 1:58536711:- 1:58536706:- 1:58534331:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
gBgcfFQ5WN9C
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
Lny8GcCeVGc9
dknfVe6BK8aP
4HMi5ykupT9V
Lny8GcCeVGc9
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
XWZVGdLC6gGJ