General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000439962
Gene ID:	ENSG00000116406
Gene Name:	EDEM3
Sequence (UNICHARACTER ENCODING)	GUGGAUAAGAGCUGUCCUAGAGGCAUCAUCAGAGUAGAGGAGAGUUUCAGGAGUGGAGCUAAACCCCCUCUGAGAGCCAGAGAUUUCAUGGCCACUAACCCUGAGCAUUUAGAAAUCCUGAAGAAGAUGGGGGUGAGUUUGAUUCACCUCAAAGAUGGGAGAGUCCAGUUGGUCCAACAUGCAAUCCAAGCUGCUAGUUCAAUCGACGCUGAAGAUGGGUUGAGGUUCAUGCAGGAGAUGAUUGAAUUGUCAAGUCAGCAACAAAAAGAACAGCAGCUGCCUCCACGAGCUGUACAAAUUGUUUCCCACCCAUUUUUUGGCAGGGUAGUAUUGACUGCUGGACCAGCUCAGUUUGGGCUGGAUCUGUCUAAACAUAAAGAGACAAGAGGAUUUGUUGCAAGCAGUAAACCAUCCAAUGGUUGUUCAGAGCUUACUAACCCAGAGGCAGUGAUGGGAAAAAUCGCACUGAUACAAAGAGGACAGUGCAUGUUUGCAGAAAAGGCACGCAACAUCCAGAAUGCUGGAGCCAUUGGUGGCAUUGUUAUUGAUGACAAUGAGGGGAGCAGCAGUGAUACUGCCCCUCUGUUCCAGAUGGCAGGUGAUGGAAAGGAUACAGAUGACAUCAAGAUCCCCAUGCUGUUCUUAUUCAGCAAAGAAGGAAGUAUCAUACUGGAUGCCAUCCGGGAAUAUGAGGAGGUAGAAGUGCUCCUCUCUGAUAAAGCAAAAGAUCGAGAUCCUGAAAUGGAAAAUGAAGAACAACCAUCCUCUGAAAAUGAUUCUCAGAAUCAGAGUGGUGAACAGAUUUCAUCAAGUUCUCAGGAGGUUGAUUUGGUUGAUCAAGAGUCUUCUGAGGAAAAUUCUCUAAAUUCUCACCCAGAAUCAUUAUCUCUAGCAGAUAUGGЖCAAUGCUGCAAGCAUUUCCCCUUCUGAACAGЖCUUCUAAUCCCACAGAAAACCAUGAGЖCUACAAAUCUUAAUGGUGAAUGUACAGAUUUAGAUAACCAGCUUCAAGAЖCAAUCAGAAЖCUGAGGAAGAUUCCAAUCCUAAUGUUAGCUGGGGUAAAAAGGUCCAGCCUAUAGЖCUCCAUAUUAGCAGACUGGAAUGAAGAUAUAGAAGCAUUUGAAAUGAUGGAGAAGGAUGAGCUAUGACUUGCUAAACAAUCUGUUGGUGAAGCCAGUGUACUUUCUCAGUGAGUUCUCUGCAUAAAGACUAAUCAGUGGGACCAGGUAAAAAGGACUGGGGCUUGGAGAAAAUGAGCAGAUGUUCCUCUAAGACAUCGAUUACAGAAGCCUUAUAUACAUGGAUUUGAUUUUGUAUUUGUAGCUGAAAGUCACUGUUGUCUAAAACUAACUUUUCUAAGUUAUCAAAACAACCUAAUUUCUUUUCCAACAAGGAGAACUUAAUGGCAUGAAGGAUUGUGUGACACAUUGGAAAAGCCAGCUUACUGCCACUCUCUUCCUUUGGCCAUUAGAGGGAGGUGUUGCCUUUCAUUGACGCUUAGAAGCAAAUUGUUCACUUGUUAAGAAAAGUAAAUCCUUAAAAAAAGAAAAGGAAAAAAUUUAACCAAUUUUUCUUAAUACCCAGAAGGAAUUAUACUCAAUAUUUCCCUAGUUAAGAAAAGAGGAGAUAAUGUUCGUCUAAAAAACUCCAACGUUGUAAUUACAACUCUACAUUCAUUUACUUACUUGACAUACUGCCACAAAGUAGUUUUUGAGUUCAUUAAAAAUUCCAAAGGCAUUAGUUGUUUUUUUUUUUUUUAGUGUUUUGUUUUUUAGUUAACUUUUAUAGЖCAUUUUAGUAЖCUUGCUAAAGAUUCAGGGGAUUCUAUGAAACCCCGAAUUUAGAAACAUCUGGUCUACCUCAGUUAAAUGUUGACUGCUUAGAAAUAUAGCUGAAGUGAUCACCACAGCCAUAAAAUUGUUUAAGAAAGAUUUAUAUAAUGUUUACAAAUCUGGAAUCAAGGAUUUUAGCUGAAAUCCUPUAAGAGAUAUUAGAGCAAGUAUUUAAUUCAGGUAUUUUCAAGUUUUAAAACUUAACCUGUUUACCUACUAAAAAUAAAAUAGCUAGUUUUUUUCUGCAUAUAAAAGUUCAUUGAAAUGAUAUGCCCUUAUUUGCAAUACUUUUCCCAUAAAGUUUUAAGUGUGAAAGAAUUGUAAUUUACUAGAUAUGUUUGGUAUGGGAUAUUUUGUUAGGCAAGUUUUCUUUUUUCUUCUUAAAUUGCAAUAGGCUUCCAAAAAGAGUAUAAUUGUUUCAGAACAAAUUAACUCUUGGCAUUAUACGUCUCCCUUUUUCUPUACAGUAUUAGUAAAAAGAAAAAUUGUACACUUUCUGAUUUUAACUUCACUAAUGUAAUUACUCUCUCAAGAAGCUUUUAAAAUUUAAAUUACCAUCACACAACCUUUUUUAUAGUAAAGCCAACAUUUGUUCUCUCACCAAACCCCAUGCCAAAUUCAUCAUGAAGAAAGCUCAGCAUAAGUAAUUCAAAUACUGCUUAUAAUUUUAGAGGGGGGUAGAAUUUAGUAAAUAUUCCAGCCGGUCGUUUUAUGCACAAGGCUUCAGUCAGAACAUAGAAAAAAAAAACAUUCUGUGAAUGAAAUAUUGUAUGUUCAGAUUUUAUAAAAGACAUUUUUAAAAGCCCAAUUUACAGCCGUAUAUUUUCUUAUGAUGUAAUUUAUGAAAAAGAUGUCUGUACUAACAGGUGCUGUAЖCACUACUGUUGUUGGAUUUUAUUGUUUGGUGAUAAAUGUAUACAAUAUUUCUAAGGGAAACUAUGUACUGUGAUGUAAAAGUCUGGGCAAAAUGUAUAUAAUCCUGUAUAUAAUUAUGUAUUUGAUUAUAAUUACUGAUUGUAAAGAUUUAAUAAAAUAUGUAAAUAUUCCA
Sequence (SHORT NAMES ENCODING)	GUGGAUAAGAGCUGUCCUAGAGGCAUCAUCAGAGUAGAGGAGAGUUUCAGGAGUGGAGCUAAACCCCCUCUGAGAGCCAGAGAUUUCAUGGCCACUAACCCUGAGCAUUUAGAAAUCCUGAAGAAGAUGGGGGUGAGUUUGAUUCACCUCAAAGAUGGGAGAGUCCAGUUGGUCCAACAUGCAAUCCAAGCUGCUAGUUCAAUCGACGCUGAAGAUGGGUUGAGGUUCAUGCAGGAGAUGAUUGAAUUGUCAAGUCAGCAACAAAAAGAACAGCAGCUGCCUCCACGAGCUGUACAAAUUGUUUCCCACCCAUUUUUUGGCAGGGUAGUAUUGACUGCUGGACCAGCUCAGUUUGGGCUGGAUCUGUCUAAACAUAAAGAGACAAGAGGAUUUGUUGCAAGCAGUAAACCAUCCAAUGGUUGUUCAGAGCUUACUAACCCAGAGGCAGUGAUGGGAAAAAUCGCACUGAUACAAAGAGGACAGUGCAUGUUUGCAGAAAAGGCACGCAACAUCCAGAAUGCUGGAGCCAUUGGUGGCAUUGUUAUUGAUGACAAUGAGGGGAGCAGCAGUGAUACUGCCCCUCUGUUCCAGAUGGCAGGUGAUGGAAAGGAUACAGAUGACAUCAAGAUCCCCAUGCUGUUCUUAUUCAGCAAAGAAGGAAGUAUCAUACUGGAUGCCAUCCGGGAAUAUGAGGAGGUAGAAGUGCUCCUCUCUGAUAAAGCAAAAGAUCGAGAUCCUGAAAUGGAAAAUGAAGAACAACCAUCCUCUGAAAAUGAUUCUCAGAAUCAGAGUGGUGAACAGAUUUCAUCAAGUUCUCAGGAGGUUGAUUUGGUUGAUCAAGAGUCUUCUGAGGAAAAUUCUCUAAAUUCUCACCCAGAAUCAUUAUCUCUAGCAGAUAUGGm6ACAAUGCUGCAAGCAUUUCCCCUUCUGAACAGm6ACUUCUAAUCCCACAGAAAACCAUGAGm6ACUACAAAUCUUAAUGGUGAAUGUACAGAUUUAGAUAACCAGCUUCAAGAm6ACAAUCAGAAm6ACUGAGGAAGAUUCCAAUCCUAAUGUUAGCUGGGGUAAAAAGGUCCAGCCUAUAGm6ACUCCAUAUUAGCAGACUGGAAUGAAGAUAUAGAAGCAUUUGAAAUGAUGGAGAAGGAUGAGCUAUGACUUGCUAAACAAUCUGUUGGUGAAGCCAGUGUACUUUCUCAGUGAGUUCUCUGCAUAAAGACUAAUCAGUGGGACCAGGUAAAAAGGACUGGGGCUUGGAGAAAAUGAGCAGAUGUUCCUCUAAGACAUCGAUUACAGAAGCCUUAUAUACAUGGAUUUGAUUUUGUAUUUGUAGCUGAAAGUCACUGUUGUCUAAAACUAACUUUUCUAAGUUAUCAAAACAACCUAAUUUCUUUUCCAACAAGGAGAACUUAAUGGCAUGAAGGAUUGUGUGACACAUUGGAAAAGCCAGCUUACUGCCACUCUCUUCCUUUGGCCAUUAGAGGGAGGUGUUGCCUUUCAUUGACGCUUAGAAGCAAAUUGUUCACUUGUUAAGAAAAGUAAAUCCUUAAAAAAAGAAAAGGAAAAAAUUUAACCAAUUUUUCUUAAUACCCAGAAGGAAUUAUACUCAAUAUUUCCCUAGUUAAGAAAAGAGGAGAUAAUGUUCGUCUAAAAAACUCCAACGUUGUAAUUACAACUCUACAUUCAUUUACUUACUUGACAUACUGCCACAAAGUAGUUUUUGAGUUCAUUAAAAAUUCCAAAGGCAUUAGUUGUUUUUUUUUUUUUUAGUGUUUUGUUUUUUAGUUAACUUUUAUAGm6ACAUUUUAGUAm6ACUUGCUAAAGAUUCAGGGGAUUCUAUGAAACCCCGAAUUUAGAAACAUCUGGUCUACCUCAGUUAAAUGUUGACUGCUUAGAAAUAUAGCUGAAGUGAUCACCACAGCCAUAAAAUUGUUUAAGAAAGAUUUAUAUAAUGUUUACAAAUCUGGAAUCAAGGAUUUUAGCUGAAAUCCUYUAAGAGAUAUUAGAGCAAGUAUUUAAUUCAGGUAUUUUCAAGUUUUAAAACUUAACCUGUUUACCUACUAAAAAUAAAAUAGCUAGUUUUUUUCUGCAUAUAAAAGUUCAUUGAAAUGAUAUGCCCUUAUUUGCAAUACUUUUCCCAUAAAGUUUUAAGUGUGAAAGAAUUGUAAUUUACUAGAUAUGUUUGGUAUGGGAUAUUUUGUUAGGCAAGUUUUCUUUUUUCUUCUUAAAUUGCAAUAGGCUUCCAAAAAGAGUAUAAUUGUUUCAGAACAAAUUAACUCUUGGCAUUAUACGUCUCCCUUUUUCUYUACAGUAUUAGUAAAAAGAAAAAUUGUACACUUUCUGAUUUUAACUUCACUAAUGUAAUUACUCUCUCAAGAAGCUUUUAAAAUUUAAAUUACCAUCACACAACCUUUUUUAUAGUAAAGCCAACAUUUGUUCUCUCACCAAACCCCAUGCCAAAUUCAUCAUGAAGAAAGCUCAGCAUAAGUAAUUCAAAUACUGCUUAUAAUUUUAGAGGGGGGUAGAAUUUAGUAAAUAUUCCAGCCGGUCGUUUUAUGCACAAGGCUUCAGUCAGAACAUAGAAAAAAAAAACAUUCUGUGAAUGAAAUAUUGUAUGUUCAGAUUUUAUAAAAGACAUUUUUAAAAGCCCAAUUUACAGCCGUAUAUUUUCUUAUGAUGUAAUUUAUGAAAAAGAUGUCUGUACUAACAGGUGCUGUAm6ACACUACUGUUGUUGGAUUUUAUUGUUUGGUGAUAAAUGUAUACAAUAUUUCUAAGGGAAACUAUGUACUGUGAUGUAAAAGUCUGGGCAAAAUGUAUAUAAUCCUGUAUAUAAUUAUGUAUUUGAUUAUAAUUACUGAUUGUAAAGAUUUAAUAAAAUAUGUAAAUAUUCCA
Sequence (MODOMICS CODE ENCODING)	GUGGAUAAGAGCUGUCCUAGAGGCAUCAUCAGAGUAGAGGAGAGUUUCAGGAGUGGAGCUAAACCCCCUCUGAGAGCCAGAGAUUUCAUGGCCACUAACCCUGAGCAUUUAGAAAUCCUGAAGAAGAUGGGGGUGAGUUUGAUUCACCUCAAAGAUGGGAGAGUCCAGUUGGUCCAACAUGCAAUCCAAGCUGCUAGUUCAAUCGACGCUGAAGAUGGGUUGAGGUUCAUGCAGGAGAUGAUUGAAUUGUCAAGUCAGCAACAAAAAGAACAGCAGCUGCCUCCACGAGCUGUACAAAUUGUUUCCCACCCAUUUUUUGGCAGGGUAGUAUUGACUGCUGGACCAGCUCAGUUUGGGCUGGAUCUGUCUAAACAUAAAGAGACAAGAGGAUUUGUUGCAAGCAGUAAACCAUCCAAUGGUUGUUCAGAGCUUACUAACCCAGAGGCAGUGAUGGGAAAAAUCGCACUGAUACAAAGAGGACAGUGCAUGUUUGCAGAAAAGGCACGCAACAUCCAGAAUGCUGGAGCCAUUGGUGGCAUUGUUAUUGAUGACAAUGAGGGGAGCAGCAGUGAUACUGCCCCUCUGUUCCAGAUGGCAGGUGAUGGAAAGGAUACAGAUGACAUCAAGAUCCCCAUGCUGUUCUUAUUCAGCAAAGAAGGAAGUAUCAUACUGGAUGCCAUCCGGGAAUAUGAGGAGGUAGAAGUGCUCCUCUCUGAUAAAGCAAAAGAUCGAGAUCCUGAAAUGGAAAAUGAAGAACAACCAUCCUCUGAAAAUGAUUCUCAGAAUCAGAGUGGUGAACAGAUUUCAUCAAGUUCUCAGGAGGUUGAUUUGGUUGAUCAAGAGUCUUCUGAGGAAAAUUCUCUAAAUUCUCACCCAGAAUCAUUAUCUCUAGCAGAUAUGG2000000006ACAAUGCUGCAAGCAUUUCCCCUUCUGAACAG2000000006ACUUCUAAUCCCACAGAAAACCAUGAG2000000006ACUACAAAUCUUAAUGGUGAAUGUACAGAUUUAGAUAACCAGCUUCAAGA2000000006ACAAUCAGAA2000000006ACUGAGGAAGAUUCCAAUCCUAAUGUUAGCUGGGGUAAAAAGGUCCAGCCUAUAG2000000006ACUCCAUAUUAGCAGACUGGAAUGAAGAUAUAGAAGCAUUUGAAAUGAUGGAGAAGGAUGAGCUAUGACUUGCUAAACAAUCUGUUGGUGAAGCCAGUGUACUUUCUCAGUGAGUUCUCUGCAUAAAGACUAAUCAGUGGGACCAGGUAAAAAGGACUGGGGCUUGGAGAAAAUGAGCAGAUGUUCCUCUAAGACAUCGAUUACAGAAGCCUUAUAUACAUGGAUUUGAUUUUGUAUUUGUAGCUGAAAGUCACUGUUGUCUAAAACUAACUUUUCUAAGUUAUCAAAACAACCUAAUUUCUUUUCCAACAAGGAGAACUUAAUGGCAUGAAGGAUUGUGUGACACAUUGGAAAAGCCAGCUUACUGCCACUCUCUUCCUUUGGCCAUUAGAGGGAGGUGUUGCCUUUCAUUGACGCUUAGAAGCAAAUUGUUCACUUGUUAAGAAAAGUAAAUCCUUAAAAAAAGAAAAGGAAAAAAUUUAACCAAUUUUUCUUAAUACCCAGAAGGAAUUAUACUCAAUAUUUCCCUAGUUAAGAAAAGAGGAGAUAAUGUUCGUCUAAAAAACUCCAACGUUGUAAUUACAACUCUACAUUCAUUUACUUACUUGACAUACUGCCACAAAGUAGUUUUUGAGUUCAUUAAAAAUUCCAAAGGCAUUAGUUGUUUUUUUUUUUUUUAGUGUUUUGUUUUUUAGUUAACUUUUAUAG2000000006ACAUUUUAGUA2000000006ACUUGCUAAAGAUUCAGGGGAUUCUAUGAAACCCCGAAUUUAGAAACAUCUGGUCUACCUCAGUUAAAUGUUGACUGCUUAGAAAUAUAGCUGAAGUGAUCACCACAGCCAUAAAAUUGUUUAAGAAAGAUUUAUAUAAUGUUUACAAAUCUGGAAUCAAGGAUUUUAGCUGAAAUCCU2000000009UUAAGAGAUAUUAGAGCAAGUAUUUAAUUCAGGUAUUUUCAAGUUUUAAAACUUAACCUGUUUACCUACUAAAAAUAAAAUAGCUAGUUUUUUUCUGCAUAUAAAAGUUCAUUGAAAUGAUAUGCCCUUAUUUGCAAUACUUUUCCCAUAAAGUUUUAAGUGUGAAAGAAUUGUAAUUUACUAGAUAUGUUUGGUAUGGGAUAUUUUGUUAGGCAAGUUUUCUUUUUUCUUCUUAAAUUGCAAUAGGCUUCCAAAAAGAGUAUAAUUGUUUCAGAACAAAUUAACUCUUGGCAUUAUACGUCUCCCUUUUUCU2000000009UUACAGUAUUAGUAAAAAGAAAAAUUGUACACUUUCUGAUUUUAACUUCACUAAUGUAAUUACUCUCUCAAGAAGCUUUUAAAAUUUAAAUUACCAUCACACAACCUUUUUUAUAGUAAAGCCAACAUUUGUUCUCUCACCAAACCCCAUGCCAAAUUCAUCAUGAAGAAAGCUCAGCAUAAGUAAUUCAAAUACUGCUUAUAAUUUUAGAGGGGGGUAGAAUUUAGUAAAUAUUCCAGCCGGUCGUUUUAUGCACAAGGCUUCAGUCAGAACAUAGAAAAAAAAAACAUUCUGUGAAUGAAAUAUUGUAUGUUCAGAUUUUAUAAAAGACAUUUUUAAAAGCCCAAUUUACAGCCGUAUAUUUUCUUAUGAUGUAAUUUAUGAAAAAGAUGUCUGUACUAACAGGUGCUGUA2000000006ACACUACUGUUGUUGGAUUUUAUUGUUUGGUGAUAAAUGUAUACAAUAUUUCUAAGGGAAACUAUGUACUGUGAUGUAAAAGUCUGGGCAAAAUGUAUAUAAUCCUGUAUAUAAUUAUGUAUUUGAUUAUAAUUACUGAUUGUAAAGAUUUAAUAAAAUAUGUAAAUAUUCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	902	934	961	1011	1021	1076	1784	1795	1974	2287	2700
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y	m6A
Genomic Coordinates	1:184694304:-	1:184694272:-	1:184694245:-	1:184694195:-	1:184694185:-	1:184694130:-	1:184691591:-	1:184691580:-	1:184691401:-	1:184691088:-	1:184690675:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KTLz8piFYdwC KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	5Nnepx5V7yHo msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	4HMi5ykupT9V msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL UKen6WEino9G	8cMbzB4aD5Se ArijeGVTwYBw BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda