General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000674743
Gene ID:	ENSG00000142871
Gene Name:	CCN1
Sequence (UNICHARACTER ENCODING)	UGCACACCAGCUUGUUGGCGUCUUCGUCGCCGCGCUCGCCCCGGGCUACUCCUGCGCGCCACAAUGAGCUCCCGCAUCGCCAGGGCGCUCGCCUUAGUCGUCACCCUUCUCCACUUGЖCCAGGCUGGCGCUCUCCACCUGCCCCGCUGCCUGCCACUGCCCCCUGGAGGCGCCCAAGUGCGCGCCGGGAGUCGGGCUGGUCCGGGACGGCUGCGGCUGCUGUAAGGUCUGCGCCAAGCAGCUCAACGAGGACUGCAGCAAAACGCAGCCCUGCGACCACACCAAGGGGCUGGAAUGCAACUUCGGCGCCAGCUCCACCGCUCUGAAGGGGAUCUGCAGAGGUAAGAUGCUUGUGGUUUGGCCCCUUUAAAAAAAAUACUAGUCCCCAUAGUCCAGAAGUUUAGUAAUUCUGAGACCAUGUAUGGUGAUGCUUUGUUGUUGGUAGCUUGGCAGAAAGGCACAUGAUUUCAGCAGUCUGGAAUGCAAUUCAGUGUGUCUGGGCCCAACGAAAGCGCAUACGGAAAAGUGAUUCCUGACUAACUUAUUGUUCUGGUCUGGAGUCUCCGGGGAAUUGUAGGGAACUUUACCAUAAAUUGAAUUUAACAGCAGAAAAUAUGUAUGAGUUUCAGGCGGUGGUUUGGAAUCUUAACUUUAUCCCCUUCUACCUUUCUCUUUUGGUGAUCUUUGCAGCUCAGUCAGAGGGCAGACCCUGUGAAUAUAACUCCAGAAUCUACCAAAACGGGGAAAGUUUCCAGCCCAACUGUAAЖCAUCAGUGCACAUGUAUUGAUGGCGCCGUGGGCUGCAUUCCUCUGUGUCCCCAAGAACUAUCUCUCCCCAACUUGGGCUGUCCCAACCCUCGGCUGGUCAAAGUUACCGGGCAGUGCUGCGAGGAGUGGGUCUGUGACGAGGAUAGUAUCAAGGACCCCAUGGAGGACCAGGACGGCCUCCUUGGCAAGGAGCUGGGAUUCGAUGCCUCCGAGGUGGAGUUGACGAGAAACAAUGAAUUGAUUGCAGUUGGAAAAGGCAGCUCACUGAAGCGGCUCCCUGUUUUUGGAAUGGAGCCUCGCAPCCUAUACAACCCUPUACAAGGCCAGAAAUGUAUUGUUCAAЖCAACUUCAUGGUCCCAGUGCUCAAAGACCUGUGGAACUGGUAUCUCCACACGAGUUACCAAUGACAACCCUGAGUGCCGCCUUGUGAAAGAAACCCGGAUUUGUGAGGUGCGGCCUUGUGGACAGCCAGUGUACAGCAGCCUGAAAAAGGGCAAGAAAUGCAGCAAGACCAAGAAAUCCCCCGAACCAGUCAGGUUUACUUACGCUGGAUGUUUGAGUGUGAAGAAAUACCGGCCCAAGUACUGCGGUUCCUGCGUGGACGGCCGAUGCUGCACGCCCCAGCUGACCAGGACUGUGAAGAUGCGGUUCCGCUGCGAAGAUGGGGAGACAUUUUCCAAGAACGUCAUGAUGAUCCAGUCCUGCAAAUGCAACUACAACUGCCCGCAUGCCAAUGAAGCAGCGUUUCCCUUCUACAGGCUGUUCAAUGЖCAUUCACAAAUUUAGGGЖCUAAAUGCUACCUGGGUUUCCAGGGCACACCUAGACAAACAAGGGAGAAGAGUGUCAGAAUCAGAAUCAUGGAGAAAAUGGGCGGGGGUGGUGUGGGUGAUGGGЖCUCAUUGUAGAAAGGAAGCCUUGCUCAUUCUUGAGGAGCAUUAAGGUAUUUCGAAACUGCCAAGGGUGCUGGUGCGGAUGGЖCACUAAUGCAGCCACGAUUGGAGAAUACUUUGCUUCAUAGUAUUGGAGCACAUGUUACUGCUUCAUUUUGGAGCUUGUGGAGUUGAUGACUUUCUGUUUUCUGUUUGUAAAUUAUUUGCUAAGCAUAUUUUCUCUAGGCUUUUUUCCUUUUGGGGUUCUACAGUCGUAAAAGAGAUAAUAAGAUUAGUUGGACAGUUUAAAGCUUUUAUUCGUCCUUUGACAAAAGUAAAUGGGAGGGCAUUCCAUCCCUUCCUGAAGGGGGACACUCCAUGAGUGUCUGUGAGAGGCAGCUAUCUGCACUCUAAACUGCAAЖCAGAAAUCAGGUGUUUUAAGACUGAAUGUUUUAUUUAUCAAAAUGUAGCUUUUGGGGAGGGAGGGGAAAUGUAAUACUGGAAUAAUUUGUAAAUGAUUUUAAUUUUAUAUUCAGUGAAAAGAUUUUAUUUAUGGAAUUAACCAUUUAAUAAAGAAAUAUUUACCUAAUAUCUGAGUGUAUGCCAUUCGGUAUUUUUAGAGGUGCUCCAAAGUCAUUAGGAACAACCUAGCUCACGUACUCAAUUAUUCAAACAGGACUUAUUGGGAUACAGCAGUGAAUUAAGCUAUUAAAAUAAGAUAAUGAUUGCUUUUAUACCUUCAGUAGAGAAAAGUCUUUGCAUAUAAAGUAAUGUUUAAAAAACAUGUAUUGAACACGACAUUGUAUGAAGCACA
Sequence (SHORT NAMES ENCODING)	UGCACACCAGCUUGUUGGCGUCUUCGUCGCCGCGCUCGCCCCGGGCUACUCCUGCGCGCCACAAUGAGCUCCCGCAUCGCCAGGGCGCUCGCCUUAGUCGUCACCCUUCUCCACUUGm6ACCAGGCUGGCGCUCUCCACCUGCCCCGCUGCCUGCCACUGCCCCCUGGAGGCGCCCAAGUGCGCGCCGGGAGUCGGGCUGGUCCGGGACGGCUGCGGCUGCUGUAAGGUCUGCGCCAAGCAGCUCAACGAGGACUGCAGCAAAACGCAGCCCUGCGACCACACCAAGGGGCUGGAAUGCAACUUCGGCGCCAGCUCCACCGCUCUGAAGGGGAUCUGCAGAGGUAAGAUGCUUGUGGUUUGGCCCCUUUAAAAAAAAUACUAGUCCCCAUAGUCCAGAAGUUUAGUAAUUCUGAGACCAUGUAUGGUGAUGCUUUGUUGUUGGUAGCUUGGCAGAAAGGCACAUGAUUUCAGCAGUCUGGAAUGCAAUUCAGUGUGUCUGGGCCCAACGAAAGCGCAUACGGAAAAGUGAUUCCUGACUAACUUAUUGUUCUGGUCUGGAGUCUCCGGGGAAUUGUAGGGAACUUUACCAUAAAUUGAAUUUAACAGCAGAAAAUAUGUAUGAGUUUCAGGCGGUGGUUUGGAAUCUUAACUUUAUCCCCUUCUACCUUUCUCUUUUGGUGAUCUUUGCAGCUCAGUCAGAGGGCAGACCCUGUGAAUAUAACUCCAGAAUCUACCAAAACGGGGAAAGUUUCCAGCCCAACUGUAAm6ACAUCAGUGCACAUGUAUUGAUGGCGCCGUGGGCUGCAUUCCUCUGUGUCCCCAAGAACUAUCUCUCCCCAACUUGGGCUGUCCCAACCCUCGGCUGGUCAAAGUUACCGGGCAGUGCUGCGAGGAGUGGGUCUGUGACGAGGAUAGUAUCAAGGACCCCAUGGAGGACCAGGACGGCCUCCUUGGCAAGGAGCUGGGAUUCGAUGCCUCCGAGGUGGAGUUGACGAGAAACAAUGAAUUGAUUGCAGUUGGAAAAGGCAGCUCACUGAAGCGGCUCCCUGUUUUUGGAAUGGAGCCUCGCAYCCUAUACAACCCUYUACAAGGCCAGAAAUGUAUUGUUCAAm6ACAACUUCAUGGUCCCAGUGCUCAAAGACCUGUGGAACUGGUAUCUCCACACGAGUUACCAAUGACAACCCUGAGUGCCGCCUUGUGAAAGAAACCCGGAUUUGUGAGGUGCGGCCUUGUGGACAGCCAGUGUACAGCAGCCUGAAAAAGGGCAAGAAAUGCAGCAAGACCAAGAAAUCCCCCGAACCAGUCAGGUUUACUUACGCUGGAUGUUUGAGUGUGAAGAAAUACCGGCCCAAGUACUGCGGUUCCUGCGUGGACGGCCGAUGCUGCACGCCCCAGCUGACCAGGACUGUGAAGAUGCGGUUCCGCUGCGAAGAUGGGGAGACAUUUUCCAAGAACGUCAUGAUGAUCCAGUCCUGCAAAUGCAACUACAACUGCCCGCAUGCCAAUGAAGCAGCGUUUCCCUUCUACAGGCUGUUCAAUGm6ACAUUCACAAAUUUAGGGm6ACUAAAUGCUACCUGGGUUUCCAGGGCACACCUAGACAAACAAGGGAGAAGAGUGUCAGAAUCAGAAUCAUGGAGAAAAUGGGCGGGGGUGGUGUGGGUGAUGGGm6ACUCAUUGUAGAAAGGAAGCCUUGCUCAUUCUUGAGGAGCAUUAAGGUAUUUCGAAACUGCCAAGGGUGCUGGUGCGGAUGGm6ACACUAAUGCAGCCACGAUUGGAGAAUACUUUGCUUCAUAGUAUUGGAGCACAUGUUACUGCUUCAUUUUGGAGCUUGUGGAGUUGAUGACUUUCUGUUUUCUGUUUGUAAAUUAUUUGCUAAGCAUAUUUUCUCUAGGCUUUUUUCCUUUUGGGGUUCUACAGUCGUAAAAGAGAUAAUAAGAUUAGUUGGACAGUUUAAAGCUUUUAUUCGUCCUUUGACAAAAGUAAAUGGGAGGGCAUUCCAUCCCUUCCUGAAGGGGGACACUCCAUGAGUGUCUGUGAGAGGCAGCUAUCUGCACUCUAAACUGCAAm6ACAGAAAUCAGGUGUUUUAAGACUGAAUGUUUUAUUUAUCAAAAUGUAGCUUUUGGGGAGGGAGGGGAAAUGUAAUACUGGAAUAAUUUGUAAAUGAUUUUAAUUUUAUAUUCAGUGAAAAGAUUUUAUUUAUGGAAUUAACCAUUUAAUAAAGAAAUAUUUACCUAAUAUCUGAGUGUAUGCCAUUCGGUAUUUUUAGAGGUGCUCCAAAGUCAUUAGGAACAACCUAGCUCACGUACUCAAUUAUUCAAACAGGACUUAUUGGGAUACAGCAGUGAAUUAAGCUAUUAAAAUAAGAUAAUGAUUGCUUUUAUACCUUCAGUAGAGAAAAGUCUUUGCAUAUAAAGUAAUGUUUAAAAAACAUGUAUUGAACACGACAUUGUAUGAAGCACA
Sequence (MODOMICS CODE ENCODING)	UGCACACCAGCUUGUUGGCGUCUUCGUCGCCGCGCUCGCCCCGGGCUACUCCUGCGCGCCACAAUGAGCUCCCGCAUCGCCAGGGCGCUCGCCUUAGUCGUCACCCUUCUCCACUUG2000000006ACCAGGCUGGCGCUCUCCACCUGCCCCGCUGCCUGCCACUGCCCCCUGGAGGCGCCCAAGUGCGCGCCGGGAGUCGGGCUGGUCCGGGACGGCUGCGGCUGCUGUAAGGUCUGCGCCAAGCAGCUCAACGAGGACUGCAGCAAAACGCAGCCCUGCGACCACACCAAGGGGCUGGAAUGCAACUUCGGCGCCAGCUCCACCGCUCUGAAGGGGAUCUGCAGAGGUAAGAUGCUUGUGGUUUGGCCCCUUUAAAAAAAAUACUAGUCCCCAUAGUCCAGAAGUUUAGUAAUUCUGAGACCAUGUAUGGUGAUGCUUUGUUGUUGGUAGCUUGGCAGAAAGGCACAUGAUUUCAGCAGUCUGGAAUGCAAUUCAGUGUGUCUGGGCCCAACGAAAGCGCAUACGGAAAAGUGAUUCCUGACUAACUUAUUGUUCUGGUCUGGAGUCUCCGGGGAAUUGUAGGGAACUUUACCAUAAAUUGAAUUUAACAGCAGAAAAUAUGUAUGAGUUUCAGGCGGUGGUUUGGAAUCUUAACUUUAUCCCCUUCUACCUUUCUCUUUUGGUGAUCUUUGCAGCUCAGUCAGAGGGCAGACCCUGUGAAUAUAACUCCAGAAUCUACCAAAACGGGGAAAGUUUCCAGCCCAACUGUAA2000000006ACAUCAGUGCACAUGUAUUGAUGGCGCCGUGGGCUGCAUUCCUCUGUGUCCCCAAGAACUAUCUCUCCCCAACUUGGGCUGUCCCAACCCUCGGCUGGUCAAAGUUACCGGGCAGUGCUGCGAGGAGUGGGUCUGUGACGAGGAUAGUAUCAAGGACCCCAUGGAGGACCAGGACGGCCUCCUUGGCAAGGAGCUGGGAUUCGAUGCCUCCGAGGUGGAGUUGACGAGAAACAAUGAAUUGAUUGCAGUUGGAAAAGGCAGCUCACUGAAGCGGCUCCCUGUUUUUGGAAUGGAGCCUCGCA2000000009UCCUAUACAACCCU2000000009UUACAAGGCCAGAAAUGUAUUGUUCAA2000000006ACAACUUCAUGGUCCCAGUGCUCAAAGACCUGUGGAACUGGUAUCUCCACACGAGUUACCAAUGACAACCCUGAGUGCCGCCUUGUGAAAGAAACCCGGAUUUGUGAGGUGCGGCCUUGUGGACAGCCAGUGUACAGCAGCCUGAAAAAGGGCAAGAAAUGCAGCAAGACCAAGAAAUCCCCCGAACCAGUCAGGUUUACUUACGCUGGAUGUUUGAGUGUGAAGAAAUACCGGCCCAAGUACUGCGGUUCCUGCGUGGACGGCCGAUGCUGCACGCCCCAGCUGACCAGGACUGUGAAGAUGCGGUUCCGCUGCGAAGAUGGGGAGACAUUUUCCAAGAACGUCAUGAUGAUCCAGUCCUGCAAAUGCAACUACAACUGCCCGCAUGCCAAUGAAGCAGCGUUUCCCUUCUACAGGCUGUUCAAUG2000000006ACAUUCACAAAUUUAGGG2000000006ACUAAAUGCUACCUGGGUUUCCAGGGCACACCUAGACAAACAAGGGAGAAGAGUGUCAGAAUCAGAAUCAUGGAGAAAAUGGGCGGGGGUGGUGUGGGUGAUGGG2000000006ACUCAUUGUAGAAAGGAAGCCUUGCUCAUUCUUGAGGAGCAUUAAGGUAUUUCGAAACUGCCAAGGGUGCUGGUGCGGAUGG2000000006ACACUAAUGCAGCCACGAUUGGAGAAUACUUUGCUUCAUAGUAUUGGAGCACAUGUUACUGCUUCAUUUUGGAGCUUGUGGAGUUGAUGACUUUCUGUUUUCUGUUUGUAAAUUAUUUGCUAAGCAUAUUUUCUCUAGGCUUUUUUCCUUUUGGGGUUCUACAGUCGUAAAAGAGAUAAUAAGAUUAGUUGGACAGUUUAAAGCUUUUAUUCGUCCUUUGACAAAAGUAAAUGGGAGGGCAUUCCAUCCCUUCCUGAAGGGGGACACUCCAUGAGUGUCUGUGAGAGGCAGCUAUCUGCACUCUAAACUGCAA2000000006ACAGAAAUCAGGUGUUUUAAGACUGAAUGUUUUAUUUAUCAAAAUGUAGCUUUUGGGGAGGGAGGGGAAAUGUAAUACUGGAAUAAUUUGUAAAUGAUUUUAAUUUUAUAUUCAGUGAAAAGAUUUUAUUUAUGGAAUUAACCAUUUAAUAAAGAAAUAUUUACCUAAUAUCUGAGUGUAUGCCAUUCGGUAUUUUUAGAGGUGCUCCAAAGUCAUUAGGAACAACCUAGCUCACGUACUCAAUUAUUCAAACAGGACUUAUUGGGAUACAGCAGUGAAUUAAGCUAUUAAAAUAAGAUAAUGAUUGCUUUUAUACCUUCAGUAGAGAAAAGUCUUUGCAUAUAAAGUAAUGUUUAAAAAACAUGUAUUGAACACGACAUUGUAUGAAGCACA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	118	766	1068	1082	1109	1536	1554	1659	1741	2054
Modification Positions	m6A	m6A	Y	Y	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	1:85581039:+	1:85582004:+	1:85582437:+	1:85582451:+	1:85582478:+	1:85583020:+	1:85583038:+	1:85583143:+	1:85583225:+	1:85583538:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8