General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000317122
Gene ID:	ENSG00000179743
Gene Name:	SPEN-AS1
Sequence (UNICHARACTER ENCODING)	UUGAAAUGCUCGAUGAUCUUCUCUUCCCGCACGUUCUCGGGCCGGGCGUGGCGGCUCACACCUGUAAUCUCAGCACUUUGGAAGGCCCUGGCGGAAGGAUCUCUUGACGUCAGGACUUCCAAAACAGUUGGGCAACACAGCAAGACCCCGUUCCCAGGCUGGGGGCAAAGCCGGGCUCGGUGGCUCACGCCUGUAAUUCCAGCACUUUGGGAGGCCGAGGUGGGCGGAUCACCUGAGCUCAGGAGUUCGAGACCAGCCUGACCAACAUGGUGAAACCCAUCUCUACUAAACAUACAAAAAUUACCCGAGCGUAUUGGCGGGCGCCUGUAGUCCCAGCUACAUGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAGGCGAAGGUUGCAGUGAGCCGAGACUGCGCCACUGCACUACAGCCUGGAUGACAAGAGACUCCCGUCUCAAAAAAAAAAAAAAAAAGACACCUUUCUUUGGGCUUAGUGAGCAAACAUUCUACGCAGUGCCUAAUAUAAGCCGGCCCAGGCACCACCCAAGCCUUCGGCCAGGЖCUGUUUUCCCGUUUCGAGAAGGCUCCAUCACACUCCACACGGGAUCCAGUCAACAGCCGUUCCAAACAUGGCGCGGGAAGGGGUGGAAGACAAGCCAGCGCGACGCCGUCCAGCCUCAUCCCCGGGGCACAAAGGGGAGACUAAUCUCCAGGAAACUCGGGGUACAGAAUCGAUAACCCCACAAGAAACUAGUUUCCGCGAGUGGGCCUUAAGGAAAAAGUAGGUCGGGCACAAGCGAGCUGUUCAGACGCACUUCACAGCAAAGACUCGCGGACAACACAGCGAGACGAAAACGGCCCCGUGCGCAGGCGCGCGGAAACACGACUAGCGCGCUUCGGGACGACCCCUCCCCCUUCCCUCAAAGGCCAAGGAAGUGGCUCCGACGCGCUUGCGCGAGGACGGAAUGUUGAGGGGAGGGGGAAUUCUUUCCCUUCAUUGUCAGAGAGAACCGCCCCCGCACGGCGAGCGCGCGCGCGCUCACGCACCACUCUCACACUCCGGCGCGCCAAAGGCUUUCCGCUUGGCGUCUCGCGCAUGCGCGGAGGGGGAAGCAGUGGCGAAAUUGGAUGCUUUUUGCUGAGUUUCUCAGAGAAGUUUCUGGAAAGAUGGAGCCAAAGGGACGCUGGGGGGUGGGGAGCGCCAGGAAGCAAGCGUUUGAAAGAAAGCGAAAAAACCCAAGCGCACCGCGACACCUCCAACCUUCAAGCCACGGCCCAAGCAGAGCCCAAGGCCACUGAGACCCUCACGCCAGAGAAAAAGCACAGGGЖCCGCGGCAGCCGCUCCUCCCUCUGCCACUGCUCAGCCCCCGAGACUCCCCAGCACGGGGAGAGGGCAGGGGGUAGCCAUGAGAAACCUAGAGCGCUCACUGGЖCUUUUGCGAGGUGGAAGGAAAGCCGAAACCCGCCCUUUGGAGCCGCCUGUGCGCACGGGCCCCGUCGAGUGGGCUCAGUACGUUAGGЖCUCAGCGUGGCCGCCAAAGCAUUGGUUGGGGGCGUCUUUCACUAAUUUUUCCUAGGUUUUCUCUUCUAUCGGGCUCUGUGGUCCUUUCACCACCCAUCUUCACUUUGGUGGCCUGACGCUAACGCUGCGAGUUGGGGAAACCGUAGUAACCCCGGGCCUGAGGGGCGUCCCGGGCGGCGGUGCUCCGUUUCUUCCAGCGGUUGCCCCUUUAAGAAAAAGCCCCCCGGAGAGGGGCCCGUGUGGCUGAGUAAAGGUGGCGUGCGCCCGCACAAAGGCGCCGCGUUGUUGGCGGGCUCCGGЖCCCUGUUGCCCCUGGGCGGGGCGGCGUGGGAAGACCGGGGCGCCUGGGCGGGGAGAACGACGUUGGCGCUAGCGGGGCAGGGCAGGGGGAGGGAGUCACGGGAUUUAGCAGGUGCUUCUCCGCGACCGAGCGACUGCCAUUUUGUGGUGCGGCCGCCGCCAUUUCGCGCGGCCGAGGGGCGGGGUGUGGGCGGAGCGGCGGGCGCGCCCGGGCUGUCCCUCGGGGCGGCGGGCUAACGCGGCCGCUUUGUUCUUCGCUUCUCGGCUCGAGGCCCCAGUCUCGACCGCCGACCGCCUCGGAACCGGGCUGCAPCCGAGCUGCCACGCGGCGUGUGAACCUUGAAGCGCGGCCGGGGAAUCCGCAAGGCGCCGACUCUCUUCCUCCUUGCAAGCCCUUCGAAAGUGAGAUUUCUCACCCCACCCUUGCAGGGUGGAGAGAЖCACGUUUCAAAAAGGGGAUGCCUAGAЖCUCAGCCGUGGGAAGUGCCUGUCUAAAGCCUUGUGCUGGUGCCAGUAGCAAACCCGUGCGCGUGCUCGGCUUUGAGCGAUCAUGGAGCUCUGCAAAUAGCUCAACUGCAGAGCGUGCCCCUUAGAGCUCCUGUGCUGCUGGGAGGCCUCAUAAAGGUGCCAAAACCAGGUGUCCCCAGCGGUUGGCCUCUPUAAAAA
Sequence (SHORT NAMES ENCODING)	UUGAAAUGCUCGAUGAUCUUCUCUUCCCGCACGUUCUCGGGCCGGGCGUGGCGGCUCACACCUGUAAUCUCAGCACUUUGGAAGGCCCUGGCGGAAGGAUCUCUUGACGUCAGGACUUCCAAAACAGUUGGGCAACACAGCAAGACCCCGUUCCCAGGCUGGGGGCAAAGCCGGGCUCGGUGGCUCACGCCUGUAAUUCCAGCACUUUGGGAGGCCGAGGUGGGCGGAUCACCUGAGCUCAGGAGUUCGAGACCAGCCUGACCAACAUGGUGAAACCCAUCUCUACUAAACAUACAAAAAUUACCCGAGCGUAUUGGCGGGCGCCUGUAGUCCCAGCUACAUGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAGGCGAAGGUUGCAGUGAGCCGAGACUGCGCCACUGCACUACAGCCUGGAUGACAAGAGACUCCCGUCUCAAAAAAAAAAAAAAAAAGACACCUUUCUUUGGGCUUAGUGAGCAAACAUUCUACGCAGUGCCUAAUAUAAGCCGGCCCAGGCACCACCCAAGCCUUCGGCCAGGm6ACUGUUUUCCCGUUUCGAGAAGGCUCCAUCACACUCCACACGGGAUCCAGUCAACAGCCGUUCCAAACAUGGCGCGGGAAGGGGUGGAAGACAAGCCAGCGCGACGCCGUCCAGCCUCAUCCCCGGGGCACAAAGGGGAGACUAAUCUCCAGGAAACUCGGGGUACAGAAUCGAUAACCCCACAAGAAACUAGUUUCCGCGAGUGGGCCUUAAGGAAAAAGUAGGUCGGGCACAAGCGAGCUGUUCAGACGCACUUCACAGCAAAGACUCGCGGACAACACAGCGAGACGAAAACGGCCCCGUGCGCAGGCGCGCGGAAACACGACUAGCGCGCUUCGGGACGACCCCUCCCCCUUCCCUCAAAGGCCAAGGAAGUGGCUCCGACGCGCUUGCGCGAGGACGGAAUGUUGAGGGGAGGGGGAAUUCUUUCCCUUCAUUGUCAGAGAGAACCGCCCCCGCACGGCGAGCGCGCGCGCGCUCACGCACCACUCUCACACUCCGGCGCGCCAAAGGCUUUCCGCUUGGCGUCUCGCGCAUGCGCGGAGGGGGAAGCAGUGGCGAAAUUGGAUGCUUUUUGCUGAGUUUCUCAGAGAAGUUUCUGGAAAGAUGGAGCCAAAGGGACGCUGGGGGGUGGGGAGCGCCAGGAAGCAAGCGUUUGAAAGAAAGCGAAAAAACCCAAGCGCACCGCGACACCUCCAACCUUCAAGCCACGGCCCAAGCAGAGCCCAAGGCCACUGAGACCCUCACGCCAGAGAAAAAGCACAGGGm6ACCGCGGCAGCCGCUCCUCCCUCUGCCACUGCUCAGCCCCCGAGACUCCCCAGCACGGGGAGAGGGCAGGGGGUAGCCAUGAGAAACCUAGAGCGCUCACUGGm6ACUUUUGCGAGGUGGAAGGAAAGCCGAAACCCGCCCUUUGGAGCCGCCUGUGCGCACGGGCCCCGUCGAGUGGGCUCAGUACGUUAGGm6ACUCAGCGUGGCCGCCAAAGCAUUGGUUGGGGGCGUCUUUCACUAAUUUUUCCUAGGUUUUCUCUUCUAUCGGGCUCUGUGGUCCUUUCACCACCCAUCUUCACUUUGGUGGCCUGACGCUAACGCUGCGAGUUGGGGAAACCGUAGUAACCCCGGGCCUGAGGGGCGUCCCGGGCGGCGGUGCUCCGUUUCUUCCAGCGGUUGCCCCUUUAAGAAAAAGCCCCCCGGAGAGGGGCCCGUGUGGCUGAGUAAAGGUGGCGUGCGCCCGCACAAAGGCGCCGCGUUGUUGGCGGGCUCCGGm6ACCCUGUUGCCCCUGGGCGGGGCGGCGUGGGAAGACCGGGGCGCCUGGGCGGGGAGAACGACGUUGGCGCUAGCGGGGCAGGGCAGGGGGAGGGAGUCACGGGAUUUAGCAGGUGCUUCUCCGCGACCGAGCGACUGCCAUUUUGUGGUGCGGCCGCCGCCAUUUCGCGCGGCCGAGGGGCGGGGUGUGGGCGGAGCGGCGGGCGCGCCCGGGCUGUCCCUCGGGGCGGCGGGCUAACGCGGCCGCUUUGUUCUUCGCUUCUCGGCUCGAGGCCCCAGUCUCGACCGCCGACCGCCUCGGAACCGGGCUGCAYCCGAGCUGCCACGCGGCGUGUGAACCUUGAAGCGCGGCCGGGGAAUCCGCAAGGCGCCGACUCUCUUCCUCCUUGCAAGCCCUUCGAAAGUGAGAUUUCUCACCCCACCCUUGCAGGGUGGAGAGAm6ACACGUUUCAAAAAGGGGAUGCCUAGAm6ACUCAGCCGUGGGAAGUGCCUGUCUAAAGCCUUGUGCUGGUGCCAGUAGCAAACCCGUGCGCGUGCUCGGCUUUGAGCGAUCAUGGAGCUCUGCAAAUAGCUCAACUGCAGAGCGUGCCCCUUAGAGCUCCUGUGCUGCUGGGAGGCCUCAUAAAGGUGCCAAAACCAGGUGUCCCCAGCGGUUGGCCUCUYUAAAAA
Sequence (MODOMICS CODE ENCODING)	UUGAAAUGCUCGAUGAUCUUCUCUUCCCGCACGUUCUCGGGCCGGGCGUGGCGGCUCACACCUGUAAUCUCAGCACUUUGGAAGGCCCUGGCGGAAGGAUCUCUUGACGUCAGGACUUCCAAAACAGUUGGGCAACACAGCAAGACCCCGUUCCCAGGCUGGGGGCAAAGCCGGGCUCGGUGGCUCACGCCUGUAAUUCCAGCACUUUGGGAGGCCGAGGUGGGCGGAUCACCUGAGCUCAGGAGUUCGAGACCAGCCUGACCAACAUGGUGAAACCCAUCUCUACUAAACAUACAAAAAUUACCCGAGCGUAUUGGCGGGCGCCUGUAGUCCCAGCUACAUGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAGGCGAAGGUUGCAGUGAGCCGAGACUGCGCCACUGCACUACAGCCUGGAUGACAAGAGACUCCCGUCUCAAAAAAAAAAAAAAAAAGACACCUUUCUUUGGGCUUAGUGAGCAAACAUUCUACGCAGUGCCUAAUAUAAGCCGGCCCAGGCACCACCCAAGCCUUCGGCCAGG2000000006ACUGUUUUCCCGUUUCGAGAAGGCUCCAUCACACUCCACACGGGAUCCAGUCAACAGCCGUUCCAAACAUGGCGCGGGAAGGGGUGGAAGACAAGCCAGCGCGACGCCGUCCAGCCUCAUCCCCGGGGCACAAAGGGGAGACUAAUCUCCAGGAAACUCGGGGUACAGAAUCGAUAACCCCACAAGAAACUAGUUUCCGCGAGUGGGCCUUAAGGAAAAAGUAGGUCGGGCACAAGCGAGCUGUUCAGACGCACUUCACAGCAAAGACUCGCGGACAACACAGCGAGACGAAAACGGCCCCGUGCGCAGGCGCGCGGAAACACGACUAGCGCGCUUCGGGACGACCCCUCCCCCUUCCCUCAAAGGCCAAGGAAGUGGCUCCGACGCGCUUGCGCGAGGACGGAAUGUUGAGGGGAGGGGGAAUUCUUUCCCUUCAUUGUCAGAGAGAACCGCCCCCGCACGGCGAGCGCGCGCGCGCUCACGCACCACUCUCACACUCCGGCGCGCCAAAGGCUUUCCGCUUGGCGUCUCGCGCAUGCGCGGAGGGGGAAGCAGUGGCGAAAUUGGAUGCUUUUUGCUGAGUUUCUCAGAGAAGUUUCUGGAAAGAUGGAGCCAAAGGGACGCUGGGGGGUGGGGAGCGCCAGGAAGCAAGCGUUUGAAAGAAAGCGAAAAAACCCAAGCGCACCGCGACACCUCCAACCUUCAAGCCACGGCCCAAGCAGAGCCCAAGGCCACUGAGACCCUCACGCCAGAGAAAAAGCACAGGG2000000006ACCGCGGCAGCCGCUCCUCCCUCUGCCACUGCUCAGCCCCCGAGACUCCCCAGCACGGGGAGAGGGCAGGGGGUAGCCAUGAGAAACCUAGAGCGCUCACUGG2000000006ACUUUUGCGAGGUGGAAGGAAAGCCGAAACCCGCCCUUUGGAGCCGCCUGUGCGCACGGGCCCCGUCGAGUGGGCUCAGUACGUUAGG2000000006ACUCAGCGUGGCCGCCAAAGCAUUGGUUGGGGGCGUCUUUCACUAAUUUUUCCUAGGUUUUCUCUUCUAUCGGGCUCUGUGGUCCUUUCACCACCCAUCUUCACUUUGGUGGCCUGACGCUAACGCUGCGAGUUGGGGAAACCGUAGUAACCCCGGGCCUGAGGGGCGUCCCGGGCGGCGGUGCUCCGUUUCUUCCAGCGGUUGCCCCUUUAAGAAAAAGCCCCCCGGAGAGGGGCCCGUGUGGCUGAGUAAAGGUGGCGUGCGCCCGCACAAAGGCGCCGCGUUGUUGGCGGGCUCCGG2000000006ACCCUGUUGCCCCUGGGCGGGGCGGCGUGGGAAGACCGGGGCGCCUGGGCGGGGAGAACGACGUUGGCGCUAGCGGGGCAGGGCAGGGGGAGGGAGUCACGGGAUUUAGCAGGUGCUUCUCCGCGACCGAGCGACUGCCAUUUUGUGGUGCGGCCGCCGCCAUUUCGCGCGGCCGAGGGGCGGGGUGUGGGCGGAGCGGCGGGCGCGCCCGGGCUGUCCCUCGGGGCGGCGGGCUAACGCGGCCGCUUUGUUCUUCGCUUCUCGGCUCGAGGCCCCAGUCUCGACCGCCGACCGCCUCGGAACCGGGCUGCA2000000009UCCGAGCUGCCACGCGGCGUGUGAACCUUGAAGCGCGGCCGGGGAAUCCGCAAGGCGCCGACUCUCUUCCUCCUUGCAAGCCCUUCGAAAGUGAGAUUUCUCACCCCACCCUUGCAGGGUGGAGAGA2000000006ACACGUUUCAAAAAGGGGAUGCCUAGA2000000006ACUCAGCCGUGGGAAGUGCCUGUCUAAAGCCUUGUGCUGGUGCCAGUAGCAAACCCGUGCGCGUGCUCGGCUUUGAGCGAUCAUGGAGCUCUGCAAAUAGCUCAACUGCAGAGCGUGCCCCUUAGAGCUCCUGUGCUGCUGGGAGGCCUCAUAAAGGUGCCAAAACCAGGUGUCCCCAGCGGUUGGCCUCU2000000009UUAAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	552	1319	1422	1510	1810	2122	2249	2276	2467
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y
Genomic Coordinates	1:15836395:-	1:15835628:-	1:15835525:-	1:15835437:-	1:15835137:-	1:15834825:-	1:15834698:-	1:15834671:-	1:15834480:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo aHkqKEJkRYyb	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9 BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8	5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8