General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000468598
Gene ID:	ENSG00000116560
Gene Name:	SFPQ
Sequence (UNICHARACTER ENCODING)	UUUUUUGUAAUGCGAUUUAAAAUUUUUAAAAACAUGGGCUUCAUGAAAACACCAUUGUUACUAACUUGGGCUUAGAUGGGAAUCUAAUGUGAAUAGUUCAAGUUAUGGGACUUGUCUAAAUGUGUCUAUACUCUAAACCUGGGGGAAGGUGGUGUGGAACAUUGACUUGACUACAGUCGAAUACAUGUUGGGAAUCAUUCCCAAUCAUAAGACAUCGUCGUUUCUGUAGGAUGACUGCAUAUGUUCAGAGUAGCUUUUUGAAUUUGGUUCCCUUAGCUUUAGGGAUGUGAUGUUAUAGUCCAAAAUGUUUACAAGAAAACCUAAGUCUUCAAAAGCACAACUUUUGUUGCUUAGGACUUUGCAUCAACUGUUGUUCCAGACCUCACUUCAACUUCUUGGUCUCUGAACUGGUUUUAGCUAGCAUGCAUGAGAGACAGUUUUCAUGUAUAAUGUUUCUGCUCUGUAACUGGAAAGUGGUUUACUUUGCAUAAAUGCUGAUGAAAACUUCAUGACUAUGAGACUUUUCUUCUGUGUAUCAAGAAAAAGCUUGCUCGUUGGCAAGCAAUUCACAAGGUGGGGACAGACUUGUACUUUAACAUGUAGUCCAUUCAAGCAAACAACUUUGGACUCUACUGAUAGAUGAAAGAGCAAAUGAUGACUAGUUUAGCCUCUGCAUAUCAACAAUAUAAUGCAGAUCAAGUAUAAUGCUCAAUAUUAGUGACAUGAGUAUCACUAAAUUACAUAGAACCCUGAUGGGGUUUCCUGUGUCGUAAUCCAUUAAAUCGGUGGCCAGUGCUUGCUGCCGUGGUUUAGUGAUUGGGUGUUAGAAAUAAAAACUCAGGUCUAUUUCUUACCAGUCAGUAACAAUUUUUAGAGAAUGUACUUGGUAUAUAAUAUAUGGACUUCAGGAACUUUAUUGGGGUGGGGGGUUAAUUUUGCCUUACCCUGUUCACUUUCAGAUGAUUAGGCUUUUGCACUUUAGAAUGAGAAACUUGUGACGUUAGUGUGUUCUUACUAGCUUUAAUUUGUAUGUAGCAAUGAAUUGUGAAUCUUAGUGCAGUGGGUUUUUUUAAAAAACUCAAAAAGCUGGGAAUUAAGUGGUUUCAGUAAUAAUGCUAUACCGAGGUGCUUGCAUUGUAUUUCAUAAUUUUGUUACAAACCAAAAUUAUUUUUAAUGAGAACAGUCUUGGGUUCAGAGGUGUGAUGCCAGAAUGUAUUUUCGUACUGUUAGGCCCUUGGAACAGAUACCGGUGCUUUCUGAAAGAUGAAAGAAAUGCAAUGGGUGCUCUUCAUGCAAGGUUGCAAACCUACCAAGAAUGCAUAAUAGUCUCACUUUUCCCCAAUAAAGAGAUGCGUGUGACUAGUUUUGGACUUUUAACCUUAAUGGGGGUUGCAUGUCUCCUAUUGUUAAUCAUUGUCAGCUGCAGUGACAUGAUCCACAGUCCUGCAUUUACUGCCUUUCACUUAAUGAUUUUGGЖCAGGUUUUAGAGAGCCAGGAUGUUGGUCUGGGCCUUUAUUUGGUUUUGGCUUUAGCUGAUAAUGUUUUAGUGAUGUCAGCUAGUGCAGUUCUCAAAUGGCUGCCUAUUAGGGAAAGAAUUCAGAGGAUUUGACUGCUCCUAAUCAUCUGUCAUUGCUGCUAGAUAAUGAUUGGCAAUUUUUAAGACUCAACUGGAAAUCUCAACAGUUGCUGGUAAACCAUUAACCAUAAAAACGUUGCUUUUGAACACCAGUGCUGAAAAAAAUAUUUUUUUUUUUUUUUUUGAGAGUGAAAAGGGCUUGGACUUAAGAUAGGACAAUGUGGAGAAUGGGGGGAAGAAUGCAAAACGAUAUAGUAUCCCUUAUGGAUGGUACAUGUGCAACAGGGAACUCUUACUUCAUAUACCCUUUGCAGUAAUCAUUCAGGGAGGAAGAAAAACCUGGAACUUGAAUGAAGGCUGAUCUUUGUUUUGUGCACUGUGGCCCUGCCAGGCAUAUAGUGAAGGUGAAUGUCUUCUCCCUCAGAAAAAAAUUGGUUCCUUGCUGUCCCAGUAAGGCAUAGCUUUUCCAGCCCUAЖCUPUAAAACUCAGUGAGGACUUAGAUGGGAAAGAAUGAGGUAAAUACAAAGGAUUGCAGGACAACAACUACAGCGUUGUGUACUGUGGGAAGGGGAGUUGGGCACUCUUGGAGGACUCCUGCUGAAGGUGGUCAGCCUGCCUGACAAUGGAAGACAUACUUGAAUGGGGAGCAGGGUAUGUGCUUUCAUAUGAAAAAAGAGCUGAUGUUAAAACUCAUUUGGUGAGGUCAACGUUGUCACAUACCUUCACAUAAGGGAUAGUAUAUUUUGGGUUGCAGUCAAACUUGUGCUCAGACUGGUGAAACUGAGAGUCAGGCUUUUACAUUUUAAAGAAAAUACAGUUUUCAUUCUAAUUCAGGUGUCUACUUAUUUUAUGUAAGAAUAAUUUUAGAUUUCCCCCCCACCAUGAAGUUUCUUCCUAUUUUUUUAUGCUGUAЖCUUACCCCCAAUCUPUAUCUCUGGAUUUUUACUCUPUAAAUUUUGAAGUUGACUAGCAUUUUCAAACCUPUAUUUUAUACCCUUGUCUUUUAUAUUAACUUUUUCUUAUUAUUCUPUAGGUAAGAAUGAUUGAUGUUGGCUGAUAUUGGAGUGCUCAUUCACAUGAAGUGGAUAGAUACUUCUCAAGACAUCACACAGCGUGAGUCAAUCAAGGAGGGAAGCCACAAGCAGACUGACAACGUUUCUAGCAGGAUCAGGUGAGCUGUGUCCAGAAAACCAACGAGAAGGAGUGGAAGGAGGAAUGAACGUUUCAUUCUCGUUAAUAAAGGCAUUAUCCUAAUUAUC
Sequence (SHORT NAMES ENCODING)	UUUUUUGUAAUGCGAUUUAAAAUUUUUAAAAACAUGGGCUUCAUGAAAACACCAUUGUUACUAACUUGGGCUUAGAUGGGAAUCUAAUGUGAAUAGUUCAAGUUAUGGGACUUGUCUAAAUGUGUCUAUACUCUAAACCUGGGGGAAGGUGGUGUGGAACAUUGACUUGACUACAGUCGAAUACAUGUUGGGAAUCAUUCCCAAUCAUAAGACAUCGUCGUUUCUGUAGGAUGACUGCAUAUGUUCAGAGUAGCUUUUUGAAUUUGGUUCCCUUAGCUUUAGGGAUGUGAUGUUAUAGUCCAAAAUGUUUACAAGAAAACCUAAGUCUUCAAAAGCACAACUUUUGUUGCUUAGGACUUUGCAUCAACUGUUGUUCCAGACCUCACUUCAACUUCUUGGUCUCUGAACUGGUUUUAGCUAGCAUGCAUGAGAGACAGUUUUCAUGUAUAAUGUUUCUGCUCUGUAACUGGAAAGUGGUUUACUUUGCAUAAAUGCUGAUGAAAACUUCAUGACUAUGAGACUUUUCUUCUGUGUAUCAAGAAAAAGCUUGCUCGUUGGCAAGCAAUUCACAAGGUGGGGACAGACUUGUACUUUAACAUGUAGUCCAUUCAAGCAAACAACUUUGGACUCUACUGAUAGAUGAAAGAGCAAAUGAUGACUAGUUUAGCCUCUGCAUAUCAACAAUAUAAUGCAGAUCAAGUAUAAUGCUCAAUAUUAGUGACAUGAGUAUCACUAAAUUACAUAGAACCCUGAUGGGGUUUCCUGUGUCGUAAUCCAUUAAAUCGGUGGCCAGUGCUUGCUGCCGUGGUUUAGUGAUUGGGUGUUAGAAAUAAAAACUCAGGUCUAUUUCUUACCAGUCAGUAACAAUUUUUAGAGAAUGUACUUGGUAUAUAAUAUAUGGACUUCAGGAACUUUAUUGGGGUGGGGGGUUAAUUUUGCCUUACCCUGUUCACUUUCAGAUGAUUAGGCUUUUGCACUUUAGAAUGAGAAACUUGUGACGUUAGUGUGUUCUUACUAGCUUUAAUUUGUAUGUAGCAAUGAAUUGUGAAUCUUAGUGCAGUGGGUUUUUUUAAAAAACUCAAAAAGCUGGGAAUUAAGUGGUUUCAGUAAUAAUGCUAUACCGAGGUGCUUGCAUUGUAUUUCAUAAUUUUGUUACAAACCAAAAUUAUUUUUAAUGAGAACAGUCUUGGGUUCAGAGGUGUGAUGCCAGAAUGUAUUUUCGUACUGUUAGGCCCUUGGAACAGAUACCGGUGCUUUCUGAAAGAUGAAAGAAAUGCAAUGGGUGCUCUUCAUGCAAGGUUGCAAACCUACCAAGAAUGCAUAAUAGUCUCACUUUUCCCCAAUAAAGAGAUGCGUGUGACUAGUUUUGGACUUUUAACCUUAAUGGGGGUUGCAUGUCUCCUAUUGUUAAUCAUUGUCAGCUGCAGUGACAUGAUCCACAGUCCUGCAUUUACUGCCUUUCACUUAAUGAUUUUGGm6ACAGGUUUUAGAGAGCCAGGAUGUUGGUCUGGGCCUUUAUUUGGUUUUGGCUUUAGCUGAUAAUGUUUUAGUGAUGUCAGCUAGUGCAGUUCUCAAAUGGCUGCCUAUUAGGGAAAGAAUUCAGAGGAUUUGACUGCUCCUAAUCAUCUGUCAUUGCUGCUAGAUAAUGAUUGGCAAUUUUUAAGACUCAACUGGAAAUCUCAACAGUUGCUGGUAAACCAUUAACCAUAAAAACGUUGCUUUUGAACACCAGUGCUGAAAAAAAUAUUUUUUUUUUUUUUUUUGAGAGUGAAAAGGGCUUGGACUUAAGAUAGGACAAUGUGGAGAAUGGGGGGAAGAAUGCAAAACGAUAUAGUAUCCCUUAUGGAUGGUACAUGUGCAACAGGGAACUCUUACUUCAUAUACCCUUUGCAGUAAUCAUUCAGGGAGGAAGAAAAACCUGGAACUUGAAUGAAGGCUGAUCUUUGUUUUGUGCACUGUGGCCCUGCCAGGCAUAUAGUGAAGGUGAAUGUCUUCUCCCUCAGAAAAAAAUUGGUUCCUUGCUGUCCCAGUAAGGCAUAGCUUUUCCAGCCCUAm6ACUYUAAAACUCAGUGAGGACUUAGAUGGGAAAGAAUGAGGUAAAUACAAAGGAUUGCAGGACAACAACUACAGCGUUGUGUACUGUGGGAAGGGGAGUUGGGCACUCUUGGAGGACUCCUGCUGAAGGUGGUCAGCCUGCCUGACAAUGGAAGACAUACUUGAAUGGGGAGCAGGGUAUGUGCUUUCAUAUGAAAAAAGAGCUGAUGUUAAAACUCAUUUGGUGAGGUCAACGUUGUCACAUACCUUCACAUAAGGGAUAGUAUAUUUUGGGUUGCAGUCAAACUUGUGCUCAGACUGGUGAAACUGAGAGUCAGGCUUUUACAUUUUAAAGAAAAUACAGUUUUCAUUCUAAUUCAGGUGUCUACUUAUUUUAUGUAAGAAUAAUUUUAGAUUUCCCCCCCACCAUGAAGUUUCUUCCUAUUUUUUUAUGCUGUAm6ACUUACCCCCAAUCUYUAUCUCUGGAUUUUUACUCUYUAAAUUUUGAAGUUGACUAGCAUUUUCAAACCUYUAUUUUAUACCCUUGUCUUUUAUAUUAACUUUUUCUUAUUAUUCUYUAGGUAAGAAUGAUUGAUGUUGGCUGAUAUUGGAGUGCUCAUUCACAUGAAGUGGAUAGAUACUUCUCAAGACAUCACACAGCGUGAGUCAAUCAAGGAGGGAAGCCACAAGCAGACUGACAACGUUUCUAGCAGGAUCAGGUGAGCUGUGUCCAGAAAACCAACGAGAAGGAGUGGAAGGAGGAAUGAACGUUUCAUUCUCGUUAAUAAAGGCAUUAUCCUAAUUAUC
Sequence (MODOMICS CODE ENCODING)	UUUUUUGUAAUGCGAUUUAAAAUUUUUAAAAACAUGGGCUUCAUGAAAACACCAUUGUUACUAACUUGGGCUUAGAUGGGAAUCUAAUGUGAAUAGUUCAAGUUAUGGGACUUGUCUAAAUGUGUCUAUACUCUAAACCUGGGGGAAGGUGGUGUGGAACAUUGACUUGACUACAGUCGAAUACAUGUUGGGAAUCAUUCCCAAUCAUAAGACAUCGUCGUUUCUGUAGGAUGACUGCAUAUGUUCAGAGUAGCUUUUUGAAUUUGGUUCCCUUAGCUUUAGGGAUGUGAUGUUAUAGUCCAAAAUGUUUACAAGAAAACCUAAGUCUUCAAAAGCACAACUUUUGUUGCUUAGGACUUUGCAUCAACUGUUGUUCCAGACCUCACUUCAACUUCUUGGUCUCUGAACUGGUUUUAGCUAGCAUGCAUGAGAGACAGUUUUCAUGUAUAAUGUUUCUGCUCUGUAACUGGAAAGUGGUUUACUUUGCAUAAAUGCUGAUGAAAACUUCAUGACUAUGAGACUUUUCUUCUGUGUAUCAAGAAAAAGCUUGCUCGUUGGCAAGCAAUUCACAAGGUGGGGACAGACUUGUACUUUAACAUGUAGUCCAUUCAAGCAAACAACUUUGGACUCUACUGAUAGAUGAAAGAGCAAAUGAUGACUAGUUUAGCCUCUGCAUAUCAACAAUAUAAUGCAGAUCAAGUAUAAUGCUCAAUAUUAGUGACAUGAGUAUCACUAAAUUACAUAGAACCCUGAUGGGGUUUCCUGUGUCGUAAUCCAUUAAAUCGGUGGCCAGUGCUUGCUGCCGUGGUUUAGUGAUUGGGUGUUAGAAAUAAAAACUCAGGUCUAUUUCUUACCAGUCAGUAACAAUUUUUAGAGAAUGUACUUGGUAUAUAAUAUAUGGACUUCAGGAACUUUAUUGGGGUGGGGGGUUAAUUUUGCCUUACCCUGUUCACUUUCAGAUGAUUAGGCUUUUGCACUUUAGAAUGAGAAACUUGUGACGUUAGUGUGUUCUUACUAGCUUUAAUUUGUAUGUAGCAAUGAAUUGUGAAUCUUAGUGCAGUGGGUUUUUUUAAAAAACUCAAAAAGCUGGGAAUUAAGUGGUUUCAGUAAUAAUGCUAUACCGAGGUGCUUGCAUUGUAUUUCAUAAUUUUGUUACAAACCAAAAUUAUUUUUAAUGAGAACAGUCUUGGGUUCAGAGGUGUGAUGCCAGAAUGUAUUUUCGUACUGUUAGGCCCUUGGAACAGAUACCGGUGCUUUCUGAAAGAUGAAAGAAAUGCAAUGGGUGCUCUUCAUGCAAGGUUGCAAACCUACCAAGAAUGCAUAAUAGUCUCACUUUUCCCCAAUAAAGAGAUGCGUGUGACUAGUUUUGGACUUUUAACCUUAAUGGGGGUUGCAUGUCUCCUAUUGUUAAUCAUUGUCAGCUGCAGUGACAUGAUCCACAGUCCUGCAUUUACUGCCUUUCACUUAAUGAUUUUGG2000000006ACAGGUUUUAGAGAGCCAGGAUGUUGGUCUGGGCCUUUAUUUGGUUUUGGCUUUAGCUGAUAAUGUUUUAGUGAUGUCAGCUAGUGCAGUUCUCAAAUGGCUGCCUAUUAGGGAAAGAAUUCAGAGGAUUUGACUGCUCCUAAUCAUCUGUCAUUGCUGCUAGAUAAUGAUUGGCAAUUUUUAAGACUCAACUGGAAAUCUCAACAGUUGCUGGUAAACCAUUAACCAUAAAAACGUUGCUUUUGAACACCAGUGCUGAAAAAAAUAUUUUUUUUUUUUUUUUUGAGAGUGAAAAGGGCUUGGACUUAAGAUAGGACAAUGUGGAGAAUGGGGGGAAGAAUGCAAAACGAUAUAGUAUCCCUUAUGGAUGGUACAUGUGCAACAGGGAACUCUUACUUCAUAUACCCUUUGCAGUAAUCAUUCAGGGAGGAAGAAAAACCUGGAACUUGAAUGAAGGCUGAUCUUUGUUUUGUGCACUGUGGCCCUGCCAGGCAUAUAGUGAAGGUGAAUGUCUUCUCCCUCAGAAAAAAAUUGGUUCCUUGCUGUCCCAGUAAGGCAUAGCUUUUCCAGCCCUA2000000006ACU2000000009UUAAAACUCAGUGAGGACUUAGAUGGGAAAGAAUGAGGUAAAUACAAAGGAUUGCAGGACAACAACUACAGCGUUGUGUACUGUGGGAAGGGGAGUUGGGCACUCUUGGAGGACUCCUGCUGAAGGUGGUCAGCCUGCCUGACAAUGGAAGACAUACUUGAAUGGGGAGCAGGGUAUGUGCUUUCAUAUGAAAAAAGAGCUGAUGUUAAAACUCAUUUGGUGAGGUCAACGUUGUCACAUACCUUCACAUAAGGGAUAGUAUAUUUUGGGUUGCAGUCAAACUUGUGCUCAGACUGGUGAAACUGAGAGUCAGGCUUUUACAUUUUAAAGAAAAUACAGUUUUCAUUCUAAUUCAGGUGUCUACUUAUUUUAUGUAAGAAUAAUUUUAGAUUUCCCCCCCACCAUGAAGUUUCUUCCUAUUUUUUUAUGCUGUA2000000006ACUUACCCCCAAUCU2000000009UUAUCUCUGGAUUUUUACUCU2000000009UUAAAUUUUGAAGUUGACUAGCAUUUUCAAACCU2000000009UUAUUUUAUACCCUUGUCUUUUAUAUUAACUUUUUCUUAUUAUUCU2000000009UUAGGUAAGAAUGAUUGAUGUUGGCUGAUAUUGGAGUGCUCAUUCACAUGAAGUGGAUAGAUACUUCUCAAGACAUCACACAGCGUGAGUCAAUCAAGGAGGGAAGCCACAAGCAGACUGACAACGUUUCUAGCAGGAUCAGGUGAGCUGUGUCCAGAAAACCAACGAGAAGGAGUGGAAGGAGGAAUGAACGUUUCAUUCUCGUUAAUAAAGGCAUUAUCCUAAUUAUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1478	2053	2056	2490	2505	2526	2560	2606
Modification Positions	m6A	m6A	Y	m6A	Y	Y	Y	Y
Genomic Coordinates	1:35179168:-	1:35178593:-	1:35178590:-	1:35178156:-	1:35178141:-	1:35178120:-	1:35178086:-	1:35178040:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	ArijeGVTwYBw WiQcrNTGZHPT Yfn77uLS5tv8	BtsJQJ3DteUq S9vNeQQYrhac	BtsJQJ3DteUq S9vNeQQYrhac a7o5Kmjr4Tdp	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8