Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000493841
Gene ID: ENSG00000152580
Gene Name: IGSF10
Sequence (UNICHARACTER ENCODING) AAGAAUCCUGAUGCCCAAGCCAUGCUGCACACAUAUUAAGUCAAAUUCUGGAGAGUGGGCAGCUGGAUCCACGUCUACCCUAAUGGAUCCCUGUUUAUUGGAUCAGUAACAGAAAAAGЖCAGUGGUGUCUACUUGUGUGUGGCAAGAAACAAAAUGGGGGAUGAUCUGAUACUGAUGCAUGUUAGCCUAAGЖCUGAAACCUGCCAAAAUUGACCACAAGCAGUAUUUUAGAAAGCAAGUGCUCCAUGGGAAAGAUUUCCAAGUAGAUUGCAAAGCUUCCGGCUCCCCAGUGCCAGAGAUAUCUUGGAGUUUGCCUGAUGGAACCAUGAUCAACAAUGCAAUGCAAGCCGAUGACAGUGGCCACAGGЖCUAGGAGAUAUACCCUUUUCAACAAUGGAЖCUUUAUACUUCAACAAAGUUGGGGUAGCGGAGGAAGGAGAUUAUACUUGCUAUGCCCAGAACACCCUAGGGAAAGAUGAAAUGAAGGUCCACUUAACAGUUAUAACAGCUGCUCCCCGGAUAAGGCAGAGUAACAAAACCAACAAGAGAAUCAAAGCUGGAGACACAGCUGUCCUUGЖCUGUGAGGUCACUGGGGAUCCCAAACCAAAAAUAUUUUGGUUGCUGCCUUCCAAUGЖCAUGAUUUCCUUCUCCAUUGAUAGGUACACAUUUCAUGCCAAUGGGUCUUUGACCAUCAACAAAGUGAAЖCUGCUCGAUUCUGGAGAGUACGUAUGUGUAGCCCGAAAUCCCAGUGGGGAUGACACCAAAAUGUACAAЖCUGGAUGUGGUCUCUAAACCUCCAUUAAUCAAUGGUCUGUAUACAAACAGAЖCUGUUAUUAAAGCCACAGCUGUGAGACAUUCCAAAAAACACUUUGACUGCAGAGCUGAAGGGACACCAUCUCCUGAAGUCAUGUGGAUCAUGCCAGACAAUAUUUUCCUCACAGCCCCAUACUAUGGAAGCAGAAUCACAGUCCAUAAAAAUGGAACCUUGGAAAUUAGGAAUGUGAGGCUUUCAGAUUCAGCCGACUUUAUCUGUGUGGCCCGAAAUGAAGGUGGAGAGAGCGUGUUGGUAGUACAGUUAGAAGUACUGGAAAUGCUGAGAAGACCGACAUUUAGAAAUCCAUUUAAUGAAAAAAUAGUUGCCCAGCUGGGAAAGUCCACAGCAUUGAAUUGCUCUGUUGAUGGUAACCCACCACCUGAAAUAAUCUGGAUUUUACCAAAUGGCACACGAUUUUCCAAUGGЖCCACAAAGUUAUCAGUAUCUGAUAGCAAGCAAUGGUUCUUUUAUCAUUUCUAAAACAACUCGGGAGGAUGCAGGAAAAUAUCGCUGUGCAGCUAGGAAUAAAGUUGGCUAUAUUGAGAAAUUAGUCAUAUUAGAAAUUGGCCAGAAGCCAGUUAUUCUUACCUAUGCACCAGGGЖCAGUAAAAGGCAUCAGUGGAGAAUCUCUAUCACUGCAUUGUGUGUCUGAUGGAAUCCCUAAGCCAAAUAUCAAAUGGЖCUAUGCCAAGUGGUUAUGUAGUAGACAGGCCUCAAAUUAAUGGGAAAUACAUAUUGCAUGACAAUGGCACCUUAGUCAUUAAAGAAGCAACAGCUUAUGACAGAGGAAACUAUAUCUGUAAGGCUCAAAAUAGUGUUGGUCAUACACUGAUUACUGUUCCAGUAAUGAUUGUAGCCUACCCUCCCCGAAUUACAAAUCGUCCACCCAGGAGUAUUGUCACCAGGACAGGGGCAGCCUUUCAGCUCCACUGUGUGGCCUUGGGAGUUCCCAAGCCAGAAAUCACAUGGGAGAUGCCUGACCACUCCCUUCUCUCAACGGCAAGUAAAGAGAGGЖCACAUGGAAGUGAGCAGCUUCACUUACAAGGUACCCUAGUCAUUCAGAAUCCCCAAACCUCCGAUUCUGGGAUAUACAAAUGCACAGCAAAGAACCCACUUGGUAGUGAUUAUGCAGCAACGUAUAUUCAAGUAAUCUGACAUGAAAUAAUAAAGUCAACAACAUCUGGGCAGAAUUUAUUUUUUGGAAGAAGUUUAAUCAAAGGCAGCCAUAGGCAUGUAAAUGAAUUUGAAUACAUUUACAGUAUUAAAUUUACAAUGAЖCAUGCAAAAUAAAAGGЖCUUGUAAAUAAAUGCAUUAUGAЖCUGA
Sequence (SHORT NAMES ENCODING) AAGAAUCCUGAUGCCCAAGCCAUGCUGCACACAUAUUAAGUCAAAUUCUGGAGAGUGGGCAGCUGGAUCCACGUCUACCCUAAUGGAUCCCUGUUUAUUGGAUCAGUAACAGAAAAAGm6ACAGUGGUGUCUACUUGUGUGUGGCAAGAAACAAAAUGGGGGAUGAUCUGAUACUGAUGCAUGUUAGCCUAAGm6ACUGAAACCUGCCAAAAUUGACCACAAGCAGUAUUUUAGAAAGCAAGUGCUCCAUGGGAAAGAUUUCCAAGUAGAUUGCAAAGCUUCCGGCUCCCCAGUGCCAGAGAUAUCUUGGAGUUUGCCUGAUGGAACCAUGAUCAACAAUGCAAUGCAAGCCGAUGACAGUGGCCACAGGm6ACUAGGAGAUAUACCCUUUUCAACAAUGGAm6ACUUUAUACUUCAACAAAGUUGGGGUAGCGGAGGAAGGAGAUUAUACUUGCUAUGCCCAGAACACCCUAGGGAAAGAUGAAAUGAAGGUCCACUUAACAGUUAUAACAGCUGCUCCCCGGAUAAGGCAGAGUAACAAAACCAACAAGAGAAUCAAAGCUGGAGACACAGCUGUCCUUGm6ACUGUGAGGUCACUGGGGAUCCCAAACCAAAAAUAUUUUGGUUGCUGCCUUCCAAUGm6ACAUGAUUUCCUUCUCCAUUGAUAGGUACACAUUUCAUGCCAAUGGGUCUUUGACCAUCAACAAAGUGAAm6ACUGCUCGAUUCUGGAGAGUACGUAUGUGUAGCCCGAAAUCCCAGUGGGGAUGACACCAAAAUGUACAAm6ACUGGAUGUGGUCUCUAAACCUCCAUUAAUCAAUGGUCUGUAUACAAACAGAm6ACUGUUAUUAAAGCCACAGCUGUGAGACAUUCCAAAAAACACUUUGACUGCAGAGCUGAAGGGACACCAUCUCCUGAAGUCAUGUGGAUCAUGCCAGACAAUAUUUUCCUCACAGCCCCAUACUAUGGAAGCAGAAUCACAGUCCAUAAAAAUGGAACCUUGGAAAUUAGGAAUGUGAGGCUUUCAGAUUCAGCCGACUUUAUCUGUGUGGCCCGAAAUGAAGGUGGAGAGAGCGUGUUGGUAGUACAGUUAGAAGUACUGGAAAUGCUGAGAAGACCGACAUUUAGAAAUCCAUUUAAUGAAAAAAUAGUUGCCCAGCUGGGAAAGUCCACAGCAUUGAAUUGCUCUGUUGAUGGUAACCCACCACCUGAAAUAAUCUGGAUUUUACCAAAUGGCACACGAUUUUCCAAUGGm6ACCACAAAGUUAUCAGUAUCUGAUAGCAAGCAAUGGUUCUUUUAUCAUUUCUAAAACAACUCGGGAGGAUGCAGGAAAAUAUCGCUGUGCAGCUAGGAAUAAAGUUGGCUAUAUUGAGAAAUUAGUCAUAUUAGAAAUUGGCCAGAAGCCAGUUAUUCUUACCUAUGCACCAGGGm6ACAGUAAAAGGCAUCAGUGGAGAAUCUCUAUCACUGCAUUGUGUGUCUGAUGGAAUCCCUAAGCCAAAUAUCAAAUGGm6ACUAUGCCAAGUGGUUAUGUAGUAGACAGGCCUCAAAUUAAUGGGAAAUACAUAUUGCAUGACAAUGGCACCUUAGUCAUUAAAGAAGCAACAGCUUAUGACAGAGGAAACUAUAUCUGUAAGGCUCAAAAUAGUGUUGGUCAUACACUGAUUACUGUUCCAGUAAUGAUUGUAGCCUACCCUCCCCGAAUUACAAAUCGUCCACCCAGGAGUAUUGUCACCAGGACAGGGGCAGCCUUUCAGCUCCACUGUGUGGCCUUGGGAGUUCCCAAGCCAGAAAUCACAUGGGAGAUGCCUGACCACUCCCUUCUCUCAACGGCAAGUAAAGAGAGGm6ACACAUGGAAGUGAGCAGCUUCACUUACAAGGUACCCUAGUCAUUCAGAAUCCCCAAACCUCCGAUUCUGGGAUAUACAAAUGCACAGCAAAGAACCCACUUGGUAGUGAUUAUGCAGCAACGUAUAUUCAAGUAAUCUGACAUGAAAUAAUAAAGUCAACAACAUCUGGGCAGAAUUUAUUUUUUGGAAGAAGUUUAAUCAAAGGCAGCCAUAGGCAUGUAAAUGAAUUUGAAUACAUUUACAGUAUUAAAUUUACAAUGAm6ACAUGCAAAAUAAAAGGm6ACUUGUAAAUAAAUGCAUUAUGAm6ACUGA
Sequence (MODOMICS CODE ENCODING) AAGAAUCCUGAUGCCCAAGCCAUGCUGCACACAUAUUAAGUCAAAUUCUGGAGAGUGGGCAGCUGGAUCCACGUCUACCCUAAUGGAUCCCUGUUUAUUGGAUCAGUAACAGAAAAAG2000000006ACAGUGGUGUCUACUUGUGUGUGGCAAGAAACAAAAUGGGGGAUGAUCUGAUACUGAUGCAUGUUAGCCUAAG2000000006ACUGAAACCUGCCAAAAUUGACCACAAGCAGUAUUUUAGAAAGCAAGUGCUCCAUGGGAAAGAUUUCCAAGUAGAUUGCAAAGCUUCCGGCUCCCCAGUGCCAGAGAUAUCUUGGAGUUUGCCUGAUGGAACCAUGAUCAACAAUGCAAUGCAAGCCGAUGACAGUGGCCACAGG2000000006ACUAGGAGAUAUACCCUUUUCAACAAUGGA2000000006ACUUUAUACUUCAACAAAGUUGGGGUAGCGGAGGAAGGAGAUUAUACUUGCUAUGCCCAGAACACCCUAGGGAAAGAUGAAAUGAAGGUCCACUUAACAGUUAUAACAGCUGCUCCCCGGAUAAGGCAGAGUAACAAAACCAACAAGAGAAUCAAAGCUGGAGACACAGCUGUCCUUG2000000006ACUGUGAGGUCACUGGGGAUCCCAAACCAAAAAUAUUUUGGUUGCUGCCUUCCAAUG2000000006ACAUGAUUUCCUUCUCCAUUGAUAGGUACACAUUUCAUGCCAAUGGGUCUUUGACCAUCAACAAAGUGAA2000000006ACUGCUCGAUUCUGGAGAGUACGUAUGUGUAGCCCGAAAUCCCAGUGGGGAUGACACCAAAAUGUACAA2000000006ACUGGAUGUGGUCUCUAAACCUCCAUUAAUCAAUGGUCUGUAUACAAACAGA2000000006ACUGUUAUUAAAGCCACAGCUGUGAGACAUUCCAAAAAACACUUUGACUGCAGAGCUGAAGGGACACCAUCUCCUGAAGUCAUGUGGAUCAUGCCAGACAAUAUUUUCCUCACAGCCCCAUACUAUGGAAGCAGAAUCACAGUCCAUAAAAAUGGAACCUUGGAAAUUAGGAAUGUGAGGCUUUCAGAUUCAGCCGACUUUAUCUGUGUGGCCCGAAAUGAAGGUGGAGAGAGCGUGUUGGUAGUACAGUUAGAAGUACUGGAAAUGCUGAGAAGACCGACAUUUAGAAAUCCAUUUAAUGAAAAAAUAGUUGCCCAGCUGGGAAAGUCCACAGCAUUGAAUUGCUCUGUUGAUGGUAACCCACCACCUGAAAUAAUCUGGAUUUUACCAAAUGGCACACGAUUUUCCAAUGG2000000006ACCACAAAGUUAUCAGUAUCUGAUAGCAAGCAAUGGUUCUUUUAUCAUUUCUAAAACAACUCGGGAGGAUGCAGGAAAAUAUCGCUGUGCAGCUAGGAAUAAAGUUGGCUAUAUUGAGAAAUUAGUCAUAUUAGAAAUUGGCCAGAAGCCAGUUAUUCUUACCUAUGCACCAGGG2000000006ACAGUAAAAGGCAUCAGUGGAGAAUCUCUAUCACUGCAUUGUGUGUCUGAUGGAAUCCCUAAGCCAAAUAUCAAAUGG2000000006ACUAUGCCAAGUGGUUAUGUAGUAGACAGGCCUCAAAUUAAUGGGAAAUACAUAUUGCAUGACAAUGGCACCUUAGUCAUUAAAGAAGCAACAGCUUAUGACAGAGGAAACUAUAUCUGUAAGGCUCAAAAUAGUGUUGGUCAUACACUGAUUACUGUUCCAGUAAUGAUUGUAGCCUACCCUCCCCGAAUUACAAAUCGUCCACCCAGGAGUAUUGUCACCAGGACAGGGGCAGCCUUUCAGCUCCACUGUGUGGCCUUGGGAGUUCCCAAGCCAGAAAUCACAUGGGAGAUGCCUGACCACUCCCUUCUCUCAACGGCAAGUAAAGAGAGG2000000006ACACAUGGAAGUGAGCAGCUUCACUUACAAGGUACCCUAGUCAUUCAGAAUCCCCAAACCUCCGAUUCUGGGAUAUACAAAUGCACAGCAAAGAACCCACUUGGUAGUGAUUAUGCAGCAACGUAUAUUCAAGUAAUCUGACAUGAAAUAAUAAAGUCAACAACAUCUGGGCAGAAUUUAUUUUUUGGAAGAAGUUUAAUCAAAGGCAGCCAUAGGCAUGUAAAUGAAUUUGAAUACAUUUACAGUAUUAAAUUUACAAUGA2000000006ACAUGCAAAAUAAAAGG2000000006ACUUGUAAAUAAAUGCAUUAUGA2000000006ACUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 119 192 367 397 575 632 702 771 823 1236 1411 1489 1822 2084 2101 2124
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:151438532:- 3:151438459:- 3:151438284:- 3:151438254:- 3:151438076:- 3:151438019:- 3:151437949:- 3:151437880:- 3:151437828:- 3:151437415:- 3:151437240:- 3:151437162:- 3:151436829:- 3:151436567:- 3:151436550:- 3:151436527:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs aJksAshEgQ8U
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
aJksAshEgQ8U
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
aJksAshEgQ8U
D6ncpa2PPWj3
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
aJksAshEgQ8U
D6ncpa2PPWj3
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
aJksAshEgQ8U
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
aJksAshEgQ8U
D6ncpa2PPWj3
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
aJksAshEgQ8U
D6ncpa2PPWj3
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML