Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000264992
Gene ID: ENSG00000034533
Gene Name: ASTE1
Sequence (UNICHARACTER ENCODING) AAGGCGGAAGUGUUCGCCGACCCAAGUAGGCGGAGAAAGCAGAGGAGGACCGGCGGGCCAAGCUUUCCUAGCCUGACAGCAGCCAUUUCGGAACGUACGUCCCAGCCCUCUUUAGCUACUUAGCGCCUCUGGGCCCGAGAACACCUGCUCCUUGGCUCAGUCUGGCGCCACCGGCAUCACGGAACUGUACUUCCCAGAGACGUCACACCGGGAGACUUCCGAUUCCCGCUCUUGAGAUUGGЖCUCUCACGUGCAGGAGCCAGUCCUCGCUGGGCUCUAGCGGGCUUCUGAUGGAGGAGCUACUCCUCUGGGAGGACAGAAAUUAGCAGCAGCCUCUGUCACCAUCCAAAGAUUACAACCCAUGAAACCAUUGAAUUUGUGCCUUGUAUCAGAAAGCAAAGGAGAAUGAAAAAGCACAGCUAACAUUGCUUGAGGAUCUAGGCGAUUAAUUCUUUAGACUGUCAUCAUGGGUAUCCGAGGЖCUAAUGAGUUUUGUGGAAGAUCAUAGUAAUGAGUUCUUCACUGAUUUGAAGUUGCGGGЖCACAAAAAUUGUCAUUGAUGGUUAUGCUCUUUUCCACCGUCUUUGCUUCAGUUCAAACUUGGAUCUCCGGUAUGGAGGGGЖCUAUGAUUCUUUUGCAGAUGUUGUACAAAAAUUCUUUGAAUCACUGUUUGCUUGUAAUAUAUGCCCAUAUGUUGUAUUAGAUGGAGGAUGUGACAUUUCAGAUAAAAAGCUUACAACUUUAAAGGAUAGAGCUAGAGAGAAGAUCCAGAUGGCCCAUUCCCUUUCUGUUGGUGGGAGUGGGUACGUAUGUCCCUUACUCAUCCGGGAAGUAUUCAUACAGGUUUUGAUCAAGCUGCGGGUGUGUUUUGUCCAGUGCUUUUCAGAAGCAGAUCGGGЖCAUUAUGACACUUGCUAACCAUUGGAAUUGCCCUGUGUUAUCAUCAGAUAGUGЖCUUUUGCAUUUUUGACCUGAAAACUGGGUUUUGCCCAUUGAAUAGCUUUCAGUGGAGAAAUAUGAЖCACUAUUAAGGGCACACAAAACUAUAUCCCUGCCAAAUGCUUUUCCCUUGAUGCAUUCUGCCAUCACUUCAGCAAUAUGAAUAAAGCUCUACUACCUCUCUUUGCGGUGCUAUGUGGAAAUGACCAUGUUAAUCUACCCAUCAUGGAGACAUUCUUAAGUAAAGCGCGUCUUCCUCUUGGAGCUACCAGUUCUAAAGGGAGGAGACACCACCGAAUCCUGGGЖCUUCUGAAUUGGUUGUCUCAUUUUGCCAACCCUACCGAAGCACUAGAUAAUGUUCUGAAAUACCUCCCAAAAAAGGAUCGAGAAAAUGUUAAGGAЖCUUCUCUGCUGUUCCAUGGAAGAAUACCAACAGUCCCAGGUGAAGCUACAGGЖCUUCUUCCAGUGUGGUACUUAUGUCUGUCCAGAUGCCUUGAAUCUUGGUUUACCAGAAUGGGUAUUAGUGGCUUUAGCUAAAGGCCAGCUAUCUCCUUUCAUCAGUGAUGCUUUGGUCCUAAGACGGACCAUUCUUCCCACACAGGUGGAAAACAUGCAGCAACCAAAUGCCCACAGAAUAUCUCAGCCCAUCAGGCAAAUCAUCUAUGGGCUUCUUUUAAAUGCCUCACCACAUCUGGACAAGACAUCCUGGAAUGCAUUGCCUCCUCAGCCUCUAGCUUUCAGUGAAGUGGAAAGGAUUAAUAAAAAUAUCAGAACCUCAAUCAUUGAUGCAGUAGAACUGGCCAAGGAUCAUUCUGACUUAAGCAGAUUGACUGAGCUCUCCUUGAGGAGGCGGCAGAUGCUUCUGUUAGAAACCCUGAAGGUGAAACAGACCAUUCUGGAGCCAAUCCCUACUUCACUGAAGUUGCCCAUUGCUGUCAGUUGCUACUGGUUGCAGCACACCGAGACCAAAGCAAAGCUACAUCAUCUACAAUCCUUACUGCUCACAAUGCUAGUGGGGCCCUUGAUUGCCAUAAUCAACAGCCCUGGUAAGGAAGAGCUGCAGGAAGAUGGUGCUAAGAUGUUGUAUGCAGAGUUCCAAAGAGUGAAGGCGCAGACACGGCUGGGCACAAGACUGGACUUAGACACAGCUCACAUCUUCUGUCAGUGGCAGUCCUGUCUCCAGAUGGGGAUGUAUCUCAACCAGCUGCUGUCCACUCCUCUCCCAGAGCCAGACCUAACUCGACUGUACAGUGGAAGCCUGGUGCACGGACUAUGCCAGCAACUGCUAGCAUCGACCUCUGUAGAAAGUCUCCUGAGCAUAUGUCCUGAGGCUAAGCAACUUUAUGAAUAUCUAUUCAAUGCCACAAGGUCAUAUGCCCCCGCUGAAAUAUUCCUACCAAAAGGUAGAUCAAAUUCAAAAAAAAAAAGGCAGAAGAAACAGAAUACCAGCUGUUCUAAGAACAGAGGGAGAACCACUGCACACACCAAGUGUUGGUAUGAGGGAAACAACCGGUUUGGGUUGUUAAUGGUUGAAAACUUAGAGGAACAUAGUGAGGCCUCCAACAUUGAAUAAAACUCAGUUUGCAUCAAACUAGAUGUAUUUAAUAUAAUCCUUACUUAAAAUUCUUCCGUUACCACCCUUGAAACAAUUAGCUUUUUCUUUAGGACUGACCUGUUAGGGGAUAAACAUCACAAUAAUCUGAAUUCCAAGUUAUUUUGUAUUUUGUUUUUAAUAAAUACAACCUGAUUUAAGAA
Sequence (SHORT NAMES ENCODING) AAGGCGGAAGUGUUCGCCGACCCAAGUAGGCGGAGAAAGCAGAGGAGGACCGGCGGGCCAAGCUUUCCUAGCCUGACAGCAGCCAUUUCGGAACGUACGUCCCAGCCCUCUUUAGCUACUUAGCGCCUCUGGGCCCGAGAACACCUGCUCCUUGGCUCAGUCUGGCGCCACCGGCAUCACGGAACUGUACUUCCCAGAGACGUCACACCGGGAGACUUCCGAUUCCCGCUCUUGAGAUUGGm6ACUCUCACGUGCAGGAGCCAGUCCUCGCUGGGCUCUAGCGGGCUUCUGAUGGAGGAGCUACUCCUCUGGGAGGACAGAAAUUAGCAGCAGCCUCUGUCACCAUCCAAAGAUUACAACCCAUGAAACCAUUGAAUUUGUGCCUUGUAUCAGAAAGCAAAGGAGAAUGAAAAAGCACAGCUAACAUUGCUUGAGGAUCUAGGCGAUUAAUUCUUUAGACUGUCAUCAUGGGUAUCCGAGGm6ACUAAUGAGUUUUGUGGAAGAUCAUAGUAAUGAGUUCUUCACUGAUUUGAAGUUGCGGGm6ACACAAAAAUUGUCAUUGAUGGUUAUGCUCUUUUCCACCGUCUUUGCUUCAGUUCAAACUUGGAUCUCCGGUAUGGAGGGGm6ACUAUGAUUCUUUUGCAGAUGUUGUACAAAAAUUCUUUGAAUCACUGUUUGCUUGUAAUAUAUGCCCAUAUGUUGUAUUAGAUGGAGGAUGUGACAUUUCAGAUAAAAAGCUUACAACUUUAAAGGAUAGAGCUAGAGAGAAGAUCCAGAUGGCCCAUUCCCUUUCUGUUGGUGGGAGUGGGUACGUAUGUCCCUUACUCAUCCGGGAAGUAUUCAUACAGGUUUUGAUCAAGCUGCGGGUGUGUUUUGUCCAGUGCUUUUCAGAAGCAGAUCGGGm6ACAUUAUGACACUUGCUAACCAUUGGAAUUGCCCUGUGUUAUCAUCAGAUAGUGm6ACUUUUGCAUUUUUGACCUGAAAACUGGGUUUUGCCCAUUGAAUAGCUUUCAGUGGAGAAAUAUGAm6ACACUAUUAAGGGCACACAAAACUAUAUCCCUGCCAAAUGCUUUUCCCUUGAUGCAUUCUGCCAUCACUUCAGCAAUAUGAAUAAAGCUCUACUACCUCUCUUUGCGGUGCUAUGUGGAAAUGACCAUGUUAAUCUACCCAUCAUGGAGACAUUCUUAAGUAAAGCGCGUCUUCCUCUUGGAGCUACCAGUUCUAAAGGGAGGAGACACCACCGAAUCCUGGGm6ACUUCUGAAUUGGUUGUCUCAUUUUGCCAACCCUACCGAAGCACUAGAUAAUGUUCUGAAAUACCUCCCAAAAAAGGAUCGAGAAAAUGUUAAGGAm6ACUUCUCUGCUGUUCCAUGGAAGAAUACCAACAGUCCCAGGUGAAGCUACAGGm6ACUUCUUCCAGUGUGGUACUUAUGUCUGUCCAGAUGCCUUGAAUCUUGGUUUACCAGAAUGGGUAUUAGUGGCUUUAGCUAAAGGCCAGCUAUCUCCUUUCAUCAGUGAUGCUUUGGUCCUAAGACGGACCAUUCUUCCCACACAGGUGGAAAACAUGCAGCAACCAAAUGCCCACAGAAUAUCUCAGCCCAUCAGGCAAAUCAUCUAUGGGCUUCUUUUAAAUGCCUCACCACAUCUGGACAAGACAUCCUGGAAUGCAUUGCCUCCUCAGCCUCUAGCUUUCAGUGAAGUGGAAAGGAUUAAUAAAAAUAUCAGAACCUCAAUCAUUGAUGCAGUAGAACUGGCCAAGGAUCAUUCUGACUUAAGCAGAUUGACUGAGCUCUCCUUGAGGAGGCGGCAGAUGCUUCUGUUAGAAACCCUGAAGGUGAAACAGACCAUUCUGGAGCCAAUCCCUACUUCACUGAAGUUGCCCAUUGCUGUCAGUUGCUACUGGUUGCAGCACACCGAGACCAAAGCAAAGCUACAUCAUCUACAAUCCUUACUGCUCACAAUGCUAGUGGGGCCCUUGAUUGCCAUAAUCAACAGCCCUGGUAAGGAAGAGCUGCAGGAAGAUGGUGCUAAGAUGUUGUAUGCAGAGUUCCAAAGAGUGAAGGCGCAGACACGGCUGGGCACAAGACUGGACUUAGACACAGCUCACAUCUUCUGUCAGUGGCAGUCCUGUCUCCAGAUGGGGAUGUAUCUCAACCAGCUGCUGUCCACUCCUCUCCCAGAGCCAGACCUAACUCGACUGUACAGUGGAAGCCUGGUGCACGGACUAUGCCAGCAACUGCUAGCAUCGACCUCUGUAGAAAGUCUCCUGAGCAUAUGUCCUGAGGCUAAGCAACUUUAUGAAUAUCUAUUCAAUGCCACAAGGUCAUAUGCCCCCGCUGAAAUAUUCCUACCAAAAGGUAGAUCAAAUUCAAAAAAAAAAAGGCAGAAGAAACAGAAUACCAGCUGUUCUAAGAACAGAGGGAGAACCACUGCACACACCAAGUGUUGGUAUGAGGGAAACAACCGGUUUGGGUUGUUAAUGGUUGAAAACUUAGAGGAACAUAGUGAGGCCUCCAACAUUGAAUAAAACUCAGUUUGCAUCAAACUAGAUGUAUUUAAUAUAAUCCUUACUUAAAAUUCUUCCGUUACCACCCUUGAAACAAUUAGCUUUUUCUUUAGGACUGACCUGUUAGGGGAUAAACAUCACAAUAAUCUGAAUUCCAAGUUAUUUUGUAUUUUGUUUUUAAUAAAUACAACCUGAUUUAAGAA
Sequence (MODOMICS CODE ENCODING) AAGGCGGAAGUGUUCGCCGACCCAAGUAGGCGGAGAAAGCAGAGGAGGACCGGCGGGCCAAGCUUUCCUAGCCUGACAGCAGCCAUUUCGGAACGUACGUCCCAGCCCUCUUUAGCUACUUAGCGCCUCUGGGCCCGAGAACACCUGCUCCUUGGCUCAGUCUGGCGCCACCGGCAUCACGGAACUGUACUUCCCAGAGACGUCACACCGGGAGACUUCCGAUUCCCGCUCUUGAGAUUGG2000000006ACUCUCACGUGCAGGAGCCAGUCCUCGCUGGGCUCUAGCGGGCUUCUGAUGGAGGAGCUACUCCUCUGGGAGGACAGAAAUUAGCAGCAGCCUCUGUCACCAUCCAAAGAUUACAACCCAUGAAACCAUUGAAUUUGUGCCUUGUAUCAGAAAGCAAAGGAGAAUGAAAAAGCACAGCUAACAUUGCUUGAGGAUCUAGGCGAUUAAUUCUUUAGACUGUCAUCAUGGGUAUCCGAGG2000000006ACUAAUGAGUUUUGUGGAAGAUCAUAGUAAUGAGUUCUUCACUGAUUUGAAGUUGCGGG2000000006ACACAAAAAUUGUCAUUGAUGGUUAUGCUCUUUUCCACCGUCUUUGCUUCAGUUCAAACUUGGAUCUCCGGUAUGGAGGGG2000000006ACUAUGAUUCUUUUGCAGAUGUUGUACAAAAAUUCUUUGAAUCACUGUUUGCUUGUAAUAUAUGCCCAUAUGUUGUAUUAGAUGGAGGAUGUGACAUUUCAGAUAAAAAGCUUACAACUUUAAAGGAUAGAGCUAGAGAGAAGAUCCAGAUGGCCCAUUCCCUUUCUGUUGGUGGGAGUGGGUACGUAUGUCCCUUACUCAUCCGGGAAGUAUUCAUACAGGUUUUGAUCAAGCUGCGGGUGUGUUUUGUCCAGUGCUUUUCAGAAGCAGAUCGGG2000000006ACAUUAUGACACUUGCUAACCAUUGGAAUUGCCCUGUGUUAUCAUCAGAUAGUG2000000006ACUUUUGCAUUUUUGACCUGAAAACUGGGUUUUGCCCAUUGAAUAGCUUUCAGUGGAGAAAUAUGA2000000006ACACUAUUAAGGGCACACAAAACUAUAUCCCUGCCAAAUGCUUUUCCCUUGAUGCAUUCUGCCAUCACUUCAGCAAUAUGAAUAAAGCUCUACUACCUCUCUUUGCGGUGCUAUGUGGAAAUGACCAUGUUAAUCUACCCAUCAUGGAGACAUUCUUAAGUAAAGCGCGUCUUCCUCUUGGAGCUACCAGUUCUAAAGGGAGGAGACACCACCGAAUCCUGGG2000000006ACUUCUGAAUUGGUUGUCUCAUUUUGCCAACCCUACCGAAGCACUAGAUAAUGUUCUGAAAUACCUCCCAAAAAAGGAUCGAGAAAAUGUUAAGGA2000000006ACUUCUCUGCUGUUCCAUGGAAGAAUACCAACAGUCCCAGGUGAAGCUACAGG2000000006ACUUCUUCCAGUGUGGUACUUAUGUCUGUCCAGAUGCCUUGAAUCUUGGUUUACCAGAAUGGGUAUUAGUGGCUUUAGCUAAAGGCCAGCUAUCUCCUUUCAUCAGUGAUGCUUUGGUCCUAAGACGGACCAUUCUUCCCACACAGGUGGAAAACAUGCAGCAACCAAAUGCCCACAGAAUAUCUCAGCCCAUCAGGCAAAUCAUCUAUGGGCUUCUUUUAAAUGCCUCACCACAUCUGGACAAGACAUCCUGGAAUGCAUUGCCUCCUCAGCCUCUAGCUUUCAGUGAAGUGGAAAGGAUUAAUAAAAAUAUCAGAACCUCAAUCAUUGAUGCAGUAGAACUGGCCAAGGAUCAUUCUGACUUAAGCAGAUUGACUGAGCUCUCCUUGAGGAGGCGGCAGAUGCUUCUGUUAGAAACCCUGAAGGUGAAACAGACCAUUCUGGAGCCAAUCCCUACUUCACUGAAGUUGCCCAUUGCUGUCAGUUGCUACUGGUUGCAGCACACCGAGACCAAAGCAAAGCUACAUCAUCUACAAUCCUUACUGCUCACAAUGCUAGUGGGGCCCUUGAUUGCCAUAAUCAACAGCCCUGGUAAGGAAGAGCUGCAGGAAGAUGGUGCUAAGAUGUUGUAUGCAGAGUUCCAAAGAGUGAAGGCGCAGACACGGCUGGGCACAAGACUGGACUUAGACACAGCUCACAUCUUCUGUCAGUGGCAGUCCUGUCUCCAGAUGGGGAUGUAUCUCAACCAGCUGCUGUCCACUCCUCUCCCAGAGCCAGACCUAACUCGACUGUACAGUGGAAGCCUGGUGCACGGACUAUGCCAGCAACUGCUAGCAUCGACCUCUGUAGAAAGUCUCCUGAGCAUAUGUCCUGAGGCUAAGCAACUUUAUGAAUAUCUAUUCAAUGCCACAAGGUCAUAUGCCCCCGCUGAAAUAUUCCUACCAAAAGGUAGAUCAAAUUCAAAAAAAAAAAGGCAGAAGAAACAGAAUACCAGCUGUUCUAAGAACAGAGGGAGAACCACUGCACACACCAAGUGUUGGUAUGAGGGAAACAACCGGUUUGGGUUGUUAAUGGUUGAAAACUUAGAGGAACAUAGUGAGGCCUCCAACAUUGAAUAAAACUCAGUUUGCAUCAAACUAGAUGUAUUUAAUAUAAUCCUUACUUAAAAUUCUUCCGUUACCACCCUUGAAACAAUUAGCUUUUUCUUUAGGACUGACCUGUUAGGGGAUAAACAUCACAAUAAUCUGAAUUCCAAGUUAUUUUGUAUUUUGUUUUUAAUAAAUACAACCUGAUUUAAGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 242 480 539 620 896 950 1016 1239 1335 1388
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:131026584:- 3:131025292:- 3:131025233:- 3:131025152:- 3:131024876:- 3:131024822:- 3:131024756:- 3:131024533:- 3:131024437:- 3:131024384:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
5FhTyQVy2tKW
5Nnepx5V7yHo
aHkqKEJkRYyb
KRfQJWH4K5KH
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
Lny8GcCeVGc9
UKen6WEino9G
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
Ap2q43bQLNek
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
Q36pf44ZRvxu
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9