General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000484134
Gene ID:	ENSG00000156990
Gene Name:	RPUSD3
Sequence (UNICHARACTER ENCODING)	ACAUGCGCGCUGUCCUGGCUCGGGAGAUGGACGGCCGCCGUGUUUUGGGCCGGUUCUGGAGUGGCUGGCGGCGGGGCCUGGGUGUCCGCCCAGUGCCCGAGGACGCAGGCUUUGGCACCGAAGCCCGGCAUCAGAGGCAACCCCGCGGCUCCUGCCAACGGUCGGGGCCCCUCGGGGACCAGCCCUUCGCGGGGCUGCUGCCAAAAAACCUCAGUCGGGAGGAGCUGGUUGAUGCGCUGCGGGCAGCCGUGGUGGACCGGAAAGGACCUCUAGUGACGUUGAACAAGCCACAGGGUCUACCAGUGACAGGAAAACCAGGAGAGCUGACGUUGUUCUCAGUGCUGCCAGAGCUGAGCCAGUCCCUAGGGCUCAGGGAGCAGGAGCUUCAGGUUGUCCGAGCAUCUGGGAAGUAAGUGGUAGGGGUGACAGGAAGCUAGGAGUACAGGCAPCCAUCUGUGGUGGGGAAЖCAGCUGCUUGGGGAUAAGCUGAGACAUUUUCCAUGGGAAGGUUUGAGAUCAUAGAGGUGGAUACAAGUACUGUGAAGAAGAGGAAGCCGAUGGCUCUGGGUPCAAAUCCUCAAGUACAAAUGGUGUGAUACCAGGCAAAGCAUGACACCUCCCUGACGCUGGGCACAGUGЖCUCACACCUGUAAUCCCAACACUUCUGGAGGCCAAGGCAAGAGGAUCACUUGAGCCCAGGAGUUCGAGЖCCAGCCUGGGCAAAAUAGACCCCAUCUCUGGAAAAACAACAACAAAЖCUUUCCGCGUGGUGGCUCAUGCCUAUAAUCAAUAGGЖCUUUGGGAGGCCGAGGUGGGAGGAUUGCUUGAGUCCAGAAGUUCAAGACCAGCCUGGGCAACAUGGCAAAACCCUAUCUPUACUUAAAAAACAAAAUAAAACACACACACACACACACACAAAAACCUAGCUGGGCAGAGCAGCACAUGCCUGUAGUGCUCGGGUGGCUGAGAUGGGAGAAUCACCUGAGCUCAGAAGAUGGCAGCUGCAAUAAGCUGAGAUCCCGCCACUGUACGCAAGCCUAAACAACCUGAAUGAGЖCCCCGUCUCAAAAAAACAAAACAAAACAAAUACCCUCCCUGAGCUUCAGUUCCCCUAAUGGUAAAAUAGAGAAAAUAAUACCUAUGCUCAGUGUGCAGUCAUUUCUCCAUGACGGUACUCGUGGCAGGCAUUGCUAGUCGAUCCAUGAUACUCUUUCCUCUAACUGCCAUCAAUUAAAGAUGGUACUUGAGAUGAAAUAUUUCUGCAGUUCCACAAACUCAUGAGCUUUUUUGUAGAGAACUUAUUUAAGAGCUAAUAUGUACAGAAUUUCUAGUAGAAUUCUGGCACAUGGUAGACAAUCGUUACGACAUUUGGCUCUGAGUUCCCUGGGGGCCGGGGCAAAAUGAGAAACACAUUAAGCUACAUAGUCUUGUUAUCAAAGAAGGGGAAACCUUACUUGUUUCUCAGGAGUUGGUCUAGGUUAUAGUCCUGGUGUUAGUGUUUGGCCUGAAGCAGGUCAGUGUUCCUAAGAGUUUCCUUUUUAGUGGGCGAGUUCAAGGGACUUUAACUUGUGUGAUUUGUCUGCUUAUUCCAGAGAAAGCUCUGGGCUUGUACUCCUCUCCAGCUGUCCCCAGACAGCUAGUCGCCUCCAGAAGUACUUCACCCAUGCACGGAGAGCCCAAAGGCCCACAGCCACCUACUGGUGAGAGGUGCUGGGAGGUUCCUAGAGUGGUGGGGAGGUCCCAGCAAGCCACCCUGUGACCUCCUCCUGCCCCUUUCUCAGUGCUGUCACUGAUGGGAUCCCAGCUGCUUCUGAGGGGAAGAUCCAGGCUGCCCUGAAACUGGAACACAUUGAUGGGGUCAAUCUCGUGAGUCCGGGUCUGGGAAGAGGAGGGGUGCUUCUAGAUAUAGUACCCCUACAGAGAGGAGUCAGGGGUAUGGAUUUGGGAUGGCUGGCUCUCCUGUCCCCUAAAACAGGCAAGUGACCACUGCCUAUACUGUGGCCCUGCCCGGAGUCUAUUGGGAGCAGGGAGGGUCUGGGUAUAGCUCCCAGACCUGUGUAAGGCUUGUUCACUCUUGGCUGGCACCACAGЖCAGUUCCAGUGAAGGCCCCAUCCCGAAAGGACAPCCUGGAAGGUGUCAAGAAGACUCUCAGUCACUUUCGUGUGGUAGCCACAGGCUCUGGCUGUGCCCUGGUCCAGCUGCAGCCACUGACAGGUAGGUCUGGCACCCUAGCCAGCCUUUAAAACUGCACUUGAUUUGGGAGGCUGAGGCAGGUGGAUCACGAGGUCAGGAGUUCAAGACCAGUCUGGCCAAGAUGGUGAAACCCUGUUUCAACUAAAAACUACAAAAAUUAGCUGGGCACGGUGGCAGGCGCCUGUAAAACCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCUGGGAGGCAGAAGUUGCAAUGAGCCAAGAUCAUGCCACUGCACUCCAGUCUAGGUGAUAGAGGAGACUUCAUCU
Sequence (SHORT NAMES ENCODING)	ACAUGCGCGCUGUCCUGGCUCGGGAGAUGGACGGCCGCCGUGUUUUGGGCCGGUUCUGGAGUGGCUGGCGGCGGGGCCUGGGUGUCCGCCCAGUGCCCGAGGACGCAGGCUUUGGCACCGAAGCCCGGCAUCAGAGGCAACCCCGCGGCUCCUGCCAACGGUCGGGGCCCCUCGGGGACCAGCCCUUCGCGGGGCUGCUGCCAAAAAACCUCAGUCGGGAGGAGCUGGUUGAUGCGCUGCGGGCAGCCGUGGUGGACCGGAAAGGACCUCUAGUGACGUUGAACAAGCCACAGGGUCUACCAGUGACAGGAAAACCAGGAGAGCUGACGUUGUUCUCAGUGCUGCCAGAGCUGAGCCAGUCCCUAGGGCUCAGGGAGCAGGAGCUUCAGGUUGUCCGAGCAUCUGGGAAGUAAGUGGUAGGGGUGACAGGAAGCUAGGAGUACAGGCAYCCAUCUGUGGUGGGGAAm6ACAGCUGCUUGGGGAUAAGCUGAGACAUUUUCCAUGGGAAGGUUUGAGAUCAUAGAGGUGGAUACAAGUACUGUGAAGAAGAGGAAGCCGAUGGCUCUGGGUYCAAAUCCUCAAGUACAAAUGGUGUGAUACCAGGCAAAGCAUGACACCUCCCUGACGCUGGGCACAGUGm6ACUCACACCUGUAAUCCCAACACUUCUGGAGGCCAAGGCAAGAGGAUCACUUGAGCCCAGGAGUUCGAGm6ACCAGCCUGGGCAAAAUAGACCCCAUCUCUGGAAAAACAACAACAAAm6ACUUUCCGCGUGGUGGCUCAUGCCUAUAAUCAAUAGGm6ACUUUGGGAGGCCGAGGUGGGAGGAUUGCUUGAGUCCAGAAGUUCAAGACCAGCCUGGGCAACAUGGCAAAACCCUAUCUYUACUUAAAAAACAAAAUAAAACACACACACACACACACACAAAAACCUAGCUGGGCAGAGCAGCACAUGCCUGUAGUGCUCGGGUGGCUGAGAUGGGAGAAUCACCUGAGCUCAGAAGAUGGCAGCUGCAAUAAGCUGAGAUCCCGCCACUGUACGCAAGCCUAAACAACCUGAAUGAGm6ACCCCGUCUCAAAAAAACAAAACAAAACAAAUACCCUCCCUGAGCUUCAGUUCCCCUAAUGGUAAAAUAGAGAAAAUAAUACCUAUGCUCAGUGUGCAGUCAUUUCUCCAUGACGGUACUCGUGGCAGGCAUUGCUAGUCGAUCCAUGAUACUCUUUCCUCUAACUGCCAUCAAUUAAAGAUGGUACUUGAGAUGAAAUAUUUCUGCAGUUCCACAAACUCAUGAGCUUUUUUGUAGAGAACUUAUUUAAGAGCUAAUAUGUACAGAAUUUCUAGUAGAAUUCUGGCACAUGGUAGACAAUCGUUACGACAUUUGGCUCUGAGUUCCCUGGGGGCCGGGGCAAAAUGAGAAACACAUUAAGCUACAUAGUCUUGUUAUCAAAGAAGGGGAAACCUUACUUGUUUCUCAGGAGUUGGUCUAGGUUAUAGUCCUGGUGUUAGUGUUUGGCCUGAAGCAGGUCAGUGUUCCUAAGAGUUUCCUUUUUAGUGGGCGAGUUCAAGGGACUUUAACUUGUGUGAUUUGUCUGCUUAUUCCAGAGAAAGCUCUGGGCUUGUACUCCUCUCCAGCUGUCCCCAGACAGCUAGUCGCCUCCAGAAGUACUUCACCCAUGCACGGAGAGCCCAAAGGCCCACAGCCACCUACUGGUGAGAGGUGCUGGGAGGUUCCUAGAGUGGUGGGGAGGUCCCAGCAAGCCACCCUGUGACCUCCUCCUGCCCCUUUCUCAGUGCUGUCACUGAUGGGAUCCCAGCUGCUUCUGAGGGGAAGAUCCAGGCUGCCCUGAAACUGGAACACAUUGAUGGGGUCAAUCUCGUGAGUCCGGGUCUGGGAAGAGGAGGGGUGCUUCUAGAUAUAGUACCCCUACAGAGAGGAGUCAGGGGUAUGGAUUUGGGAUGGCUGGCUCUCCUGUCCCCUAAAACAGGCAAGUGACCACUGCCUAUACUGUGGCCCUGCCCGGAGUCUAUUGGGAGCAGGGAGGGUCUGGGUAUAGCUCCCAGACCUGUGUAAGGCUUGUUCACUCUUGGCUGGCACCACAGm6ACAGUUCCAGUGAAGGCCCCAUCCCGAAAGGACAYCCUGGAAGGUGUCAAGAAGACUCUCAGUCACUUUCGUGUGGUAGCCACAGGCUCUGGCUGUGCCCUGGUCCAGCUGCAGCCACUGACAGGUAGGUCUGGCACCCUAGCCAGCCUUUAAAACUGCACUUGAUUUGGGAGGCUGAGGCAGGUGGAUCACGAGGUCAGGAGUUCAAGACCAGUCUGGCCAAGAUGGUGAAACCCUGUUUCAACUAAAAACUACAAAAAUUAGCUGGGCACGGUGGCAGGCGCCUGUAAAACCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCUGGGAGGCAGAAGUUGCAAUGAGCCAAGAUCAUGCCACUGCACUCCAGUCUAGGUGAUAGAGGAGACUUCAUCU
Sequence (MODOMICS CODE ENCODING)	ACAUGCGCGCUGUCCUGGCUCGGGAGAUGGACGGCCGCCGUGUUUUGGGCCGGUUCUGGAGUGGCUGGCGGCGGGGCCUGGGUGUCCGCCCAGUGCCCGAGGACGCAGGCUUUGGCACCGAAGCCCGGCAUCAGAGGCAACCCCGCGGCUCCUGCCAACGGUCGGGGCCCCUCGGGGACCAGCCCUUCGCGGGGCUGCUGCCAAAAAACCUCAGUCGGGAGGAGCUGGUUGAUGCGCUGCGGGCAGCCGUGGUGGACCGGAAAGGACCUCUAGUGACGUUGAACAAGCCACAGGGUCUACCAGUGACAGGAAAACCAGGAGAGCUGACGUUGUUCUCAGUGCUGCCAGAGCUGAGCCAGUCCCUAGGGCUCAGGGAGCAGGAGCUUCAGGUUGUCCGAGCAUCUGGGAAGUAAGUGGUAGGGGUGACAGGAAGCUAGGAGUACAGGCA2000000009UCCAUCUGUGGUGGGGAA2000000006ACAGCUGCUUGGGGAUAAGCUGAGACAUUUUCCAUGGGAAGGUUUGAGAUCAUAGAGGUGGAUACAAGUACUGUGAAGAAGAGGAAGCCGAUGGCUCUGGGU2000000009UCAAAUCCUCAAGUACAAAUGGUGUGAUACCAGGCAAAGCAUGACACCUCCCUGACGCUGGGCACAGUG2000000006ACUCACACCUGUAAUCCCAACACUUCUGGAGGCCAAGGCAAGAGGAUCACUUGAGCCCAGGAGUUCGAG2000000006ACCAGCCUGGGCAAAAUAGACCCCAUCUCUGGAAAAACAACAACAAA2000000006ACUUUCCGCGUGGUGGCUCAUGCCUAUAAUCAAUAGG2000000006ACUUUGGGAGGCCGAGGUGGGAGGAUUGCUUGAGUCCAGAAGUUCAAGACCAGCCUGGGCAACAUGGCAAAACCCUAUCU2000000009UUACUUAAAAAACAAAAUAAAACACACACACACACACACACAAAAACCUAGCUGGGCAGAGCAGCACAUGCCUGUAGUGCUCGGGUGGCUGAGAUGGGAGAAUCACCUGAGCUCAGAAGAUGGCAGCUGCAAUAAGCUGAGAUCCCGCCACUGUACGCAAGCCUAAACAACCUGAAUGAG2000000006ACCCCGUCUCAAAAAAACAAAACAAAACAAAUACCCUCCCUGAGCUUCAGUUCCCCUAAUGGUAAAAUAGAGAAAAUAAUACCUAUGCUCAGUGUGCAGUCAUUUCUCCAUGACGGUACUCGUGGCAGGCAUUGCUAGUCGAUCCAUGAUACUCUUUCCUCUAACUGCCAUCAAUUAAAGAUGGUACUUGAGAUGAAAUAUUUCUGCAGUUCCACAAACUCAUGAGCUUUUUUGUAGAGAACUUAUUUAAGAGCUAAUAUGUACAGAAUUUCUAGUAGAAUUCUGGCACAUGGUAGACAAUCGUUACGACAUUUGGCUCUGAGUUCCCUGGGGGCCGGGGCAAAAUGAGAAACACAUUAAGCUACAUAGUCUUGUUAUCAAAGAAGGGGAAACCUUACUUGUUUCUCAGGAGUUGGUCUAGGUUAUAGUCCUGGUGUUAGUGUUUGGCCUGAAGCAGGUCAGUGUUCCUAAGAGUUUCCUUUUUAGUGGGCGAGUUCAAGGGACUUUAACUUGUGUGAUUUGUCUGCUUAUUCCAGAGAAAGCUCUGGGCUUGUACUCCUCUCCAGCUGUCCCCAGACAGCUAGUCGCCUCCAGAAGUACUUCACCCAUGCACGGAGAGCCCAAAGGCCCACAGCCACCUACUGGUGAGAGGUGCUGGGAGGUUCCUAGAGUGGUGGGGAGGUCCCAGCAAGCCACCCUGUGACCUCCUCCUGCCCCUUUCUCAGUGCUGUCACUGAUGGGAUCCCAGCUGCUUCUGAGGGGAAGAUCCAGGCUGCCCUGAAACUGGAACACAUUGAUGGGGUCAAUCUCGUGAGUCCGGGUCUGGGAAGAGGAGGGGUGCUUCUAGAUAUAGUACCCCUACAGAGAGGAGUCAGGGGUAUGGAUUUGGGAUGGCUGGCUCUCCUGUCCCCUAAAACAGGCAAGUGACCACUGCCUAUACUGUGGCCCUGCCCGGAGUCUAUUGGGAGCAGGGAGGGUCUGGGUAUAGCUCCCAGACCUGUGUAAGGCUUGUUCACUCUUGGCUGGCACCACAG2000000006ACAGUUCCAGUGAAGGCCCCAUCCCGAAAGGACA2000000009UCCUGGAAGGUGUCAAGAAGACUCUCAGUCACUUUCGUGUGGUAGCCACAGGCUCUGGCUGUGCCCUGGUCCAGCUGCAGCCACUGACAGGUAGGUCUGGCACCCUAGCCAGCCUUUAAAACUGCACUUGAUUUGGGAGGCUGAGGCAGGUGGAUCACGAGGUCAGGAGUUCAAGACCAGUCUGGCCAAGAUGGUGAAACCCUGUUUCAACUAAAAACUACAAAAAUUAGCUGGGCACGGUGGCAGGCGCCUGUAAAACCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCUGGGAGGCAGAAGUUGCAAUGAGCCAAGAUCAUGCCACUGCACUCCAGUCUAGGUGAUAGAGGAGACUUCAUCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	449	467	569	638	707	754	791	871	1051	2085	2119
Modification Positions	Y	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y
Genomic Coordinates	3:9841943:-	3:9841925:-	3:9841823:-	3:9841754:-	3:9841685:-	3:9841638:-	3:9841601:-	3:9841521:-	3:9841341:-	3:9840307:-	3:9840273:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8