General Data

RNA Type	tRNA
SOTerm	SO:0000259
Original Source	tdbR00000342
Secondary Structure	(((((((..((((....[...)))).(((((.......)))))....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGUUCCAUKGUGPAAD#GDDAGCACUCPGGABUCUGAAPCCAGCGAU?CGAGPPCAѢAUCUCGGUGGAACCUCCA
Sequence (SHORT NAMES ENCODING)	GGUUCCAUpm1GGUGpYAApDpGmGpDpDAGCACUCpYGGApCmUCUGAApYCCAGCGAUpm5CCGAGpYpYCApm1AAUCUCGGUGGAACCUCCA
Sequence (MODOMICS CODE ENCODING)	GGUUCCAU2000001551GGUG2000009551UAA2000008551U2000090551GG2000008551U2000008551UAGCACUC2000009551UGGA2000090551CUCUGAA2000009551UCCAGCGAU2000005551CCGAG2000009551U2000009551UCA2000001551AAUCUCGGUGGAACCUCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGUUCCAUKGUGPAAD--#GDD-AGCACUCPGGABUCUGAAPCCAGCGAU--------------------?CGAGPPCAѢAUCUCGGUGGAACCUCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	9	13	16	18	20	20A	28	32	39	49	54	55	58
Position in the sequence	9	13	16	17	19	20	28	32	39	48	53	54	57
Modification positions	m1G	Y	D	Gm	D	D	Y	Cm	Y	m5C	Y	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS