General Data

RNA Type	tRNA
SOTerm	SO:0001036
Original Source	tdbR00000377
Secondary Structure	(((((((..(((.....[....))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGGCCAGUKLCGCAADGGADAACGCRPCUGABUICGKAPCAGAAGADU?PAGGPPCGѢCUCCUGGCUGGCUCGCCA
Sequence (SHORT NAMES ENCODING)	GGGCCAGUpm1Gpm2GCGCAApDGGApDAACGCpm2,2GpYCUGApCmUpICGpm1GApYCAGAAGApDUpm5CpYAGGpYpYCGpm1ACUCCUGGCUGGCUCGCCA
Sequence (MODOMICS CODE ENCODING)	GGGCCAGU2000001551G2000002551GCGCAA2000008551UGGA2000008551UAACGC2000022551G2000009551UCUGA2000090551CU2000009551ACG2000001551GA2000009551UCAGAAGA2000008551UU2000005551C2000009551UAGG2000009551U2000009551UCG2000001551ACUCCUGGCUGGCUCGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGGCCAGUKLCGCAAD--GGAD-AACGCRPCUGABUICGKAPCAGAAGADU-------------------?PAGGPPCGѢCUCCUGGCUGGCUCGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	9	10	16	20A	26	27	32	34	37	39	45B	49	50	54	55	58
Position in the sequence	9	10	16	20	26	27	32	34	37	39	47	49	50	54	55	58
Modification positions	m1G	m2G	D	D	m2,2G	Y	Cm	I	m1G	Y	D	m5C	Y	Y	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS