Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000701921
Gene ID: ENSG00000291223
Gene Name: FAM86DP
Sequence (UNICHARACTER ENCODING) AGAGUUUCGAGCGCCGCUUCCUGGCGGCGCGCACGCUGCGCUCCUUCCCCUGGCAGGGGGGCGGCGGGCGAGCGGAGAGGCCCGCGGGGCUCGCGGGAGUCCAGGGGCAGACGGGAUGGGUCUCCGUGCUGAAACCCCCGGCGCUCCUGCCACAGCUUAGAAGCAAAGUUAAGAGACUCAUCAGAUUCUGAGCUGCUGCGGGAUAUUUUGCAGAAGACUGUGAAGCAUCCUGUGUGUGUGUGAAGCACCCGCCGUCAGUCAAGAAAGCCCGGUGCUUUCUCUCAGAACUCAUCAAAAAGCCCUCGGGAGGCUCAGUCACACUCUCCGAGAGCACAGCCAUCAUCUCCCAUGGUACCACAGGCCUGGUCACAUGGGAUGCCACCCUCUACCUUGCAGAAUGGGCCAUCGAGAACCCAGCAGCCUUCACUAACAGUAACCUGAAGCUUUCACCGUAGACGUGCUGUAUUGCCCAGAAGCCAUCGUGUCGCUGGUCGGGAUCCUGCGGAGGCUGGCUGCCUGCUGGGAGCACCAGCAGUCUCCUGAGGUCUACGUGGCCUUUACCGUCCACAACCCAGAGACGUGCCAGCUGUUCACCACCGAGCUAGGCCGGGCUGGGAUCAUAUGGGAAGCGGAAGCUCAUCAUGACCAGAAЖCUGUUUCCCUAUGGAGAGCACUUGGAGAUGGCAAUGCUGAACCUCACACUGUAGGЖCUCACACACGACUCCAACGGGAUUGUGAGAAUCAAGUCAAUCUCAUGGGAAGAAUUUUUAUAUGGGAAAGCGGAUAAAЖCUUUCAUUGUACUGGAAUGUUUGGAGAAUGUUAAAUUCCAAAUCAGAAACCACAAЖCUGCCCUCUAAUAAGACAUCGGCUAUCUAAGCGUG
Sequence (SHORT NAMES ENCODING) AGAGUUUCGAGCGCCGCUUCCUGGCGGCGCGCACGCUGCGCUCCUUCCCCUGGCAGGGGGGCGGCGGGCGAGCGGAGAGGCCCGCGGGGCUCGCGGGAGUCCAGGGGCAGACGGGAUGGGUCUCCGUGCUGAAACCCCCGGCGCUCCUGCCACAGCUUAGAAGCAAAGUUAAGAGACUCAUCAGAUUCUGAGCUGCUGCGGGAUAUUUUGCAGAAGACUGUGAAGCAUCCUGUGUGUGUGUGAAGCACCCGCCGUCAGUCAAGAAAGCCCGGUGCUUUCUCUCAGAACUCAUCAAAAAGCCCUCGGGAGGCUCAGUCACACUCUCCGAGAGCACAGCCAUCAUCUCCCAUGGUACCACAGGCCUGGUCACAUGGGAUGCCACCCUCUACCUUGCAGAAUGGGCCAUCGAGAACCCAGCAGCCUUCACUAACAGUAACCUGAAGCUUUCACCGUAGACGUGCUGUAUUGCCCAGAAGCCAUCGUGUCGCUGGUCGGGAUCCUGCGGAGGCUGGCUGCCUGCUGGGAGCACCAGCAGUCUCCUGAGGUCUACGUGGCCUUUACCGUCCACAACCCAGAGACGUGCCAGCUGUUCACCACCGAGCUAGGCCGGGCUGGGAUCAUAUGGGAAGCGGAAGCUCAUCAUGACCAGAAm6ACUGUUUCCCUAUGGAGAGCACUUGGAGAUGGCAAUGCUGAACCUCACACUGUAGGm6ACUCACACACGACUCCAACGGGAUUGUGAGAAUCAAGUCAAUCUCAUGGGAAGAAUUUUUAUAUGGGAAAGCGGAUAAAm6ACUUUCAUUGUACUGGAAUGUUUGGAGAAUGUUAAAUUCCAAAUCAGAAACCACAAm6ACUGCCCUCUAAUAAGACAUCGGCUAUCUAAGCGUG
Sequence (MODOMICS CODE ENCODING) AGAGUUUCGAGCGCCGCUUCCUGGCGGCGCGCACGCUGCGCUCCUUCCCCUGGCAGGGGGGCGGCGGGCGAGCGGAGAGGCCCGCGGGGCUCGCGGGAGUCCAGGGGCAGACGGGAUGGGUCUCCGUGCUGAAACCCCCGGCGCUCCUGCCACAGCUUAGAAGCAAAGUUAAGAGACUCAUCAGAUUCUGAGCUGCUGCGGGAUAUUUUGCAGAAGACUGUGAAGCAUCCUGUGUGUGUGUGAAGCACCCGCCGUCAGUCAAGAAAGCCCGGUGCUUUCUCUCAGAACUCAUCAAAAAGCCCUCGGGAGGCUCAGUCACACUCUCCGAGAGCACAGCCAUCAUCUCCCAUGGUACCACAGGCCUGGUCACAUGGGAUGCCACCCUCUACCUUGCAGAAUGGGCCAUCGAGAACCCAGCAGCCUUCACUAACAGUAACCUGAAGCUUUCACCGUAGACGUGCUGUAUUGCCCAGAAGCCAUCGUGUCGCUGGUCGGGAUCCUGCGGAGGCUGGCUGCCUGCUGGGAGCACCAGCAGUCUCCUGAGGUCUACGUGGCCUUUACCGUCCACAACCCAGAGACGUGCCAGCUGUUCACCACCGAGCUAGGCCGGGCUGGGAUCAUAUGGGAAGCGGAAGCUCAUCAUGACCAGAA2000000006ACUGUUUCCCUAUGGAGAGCACUUGGAGAUGGCAAUGCUGAACCUCACACUGUAGG2000000006ACUCACACACGACUCCAACGGGAUUGUGAGAAUCAAGUCAAUCUCAUGGGAAGAAUUUUUAUAUGGGAAAGCGGAUAAA2000000006ACUUUCAUUGUACUGGAAUGUUUGGAGAAUGUUAAAUUCCAAAUCAGAAACCACAA2000000006ACUGCCCUCUAAUAAGACAUCGGCUAUCUAAGCGUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 652 708 787 843
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 3:75423015:- 3:75422959:- 3:75422880:- 3:75422824:-
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
Yfn77uLS5tv8
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
Yfn77uLS5tv8
Lny8GcCeVGc9
UKen6WEino9G
Yfn77uLS5tv8
msuJfBpJvM5H
Lny8GcCeVGc9