Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000461696
Gene ID: ENSG00000206560
Gene Name: ANKRD28
Sequence (UNICHARACTER ENCODING) AGAUCUCUGGUAAGUGUAACAUGUGAGCAUUACUAGGCAUUUCAUCCUGUGGGUCUGCAGUCUUUGCUCUUCAGACUGUUGCUCCGUUGGAAUGCUUCUGUGGGЖCUGAUACUGAGGUUCUAUAGAUAUUUUUUAAGGЖCCUACUCAUUUGGGGAUGUCAGUGGUGUUUUGCAAGAUCAUCUGAGGAACAGGAAAGCAUUUGAAAUCUGAAAAGGAUAACUGUGGCGGUUUUCACAGUGGAAGGAAACUAUAUUGGCAAAGAGGCAGAUGACUGAAUAAAGUAGUUGGCUCAAAGAAGAUGCACAGUCUGCUAUUUUUUUCUCUGAAUGAAGЖCUGUUUAAUGGAAGCUGUAUUCAUGUGGAGAUCAAAGGAAACACUGGAAUGAUACACUACUAUGUUUUUCCCCCCCCUUUUUUUUUUUAAAGAAAACAAAAAGCCUGAAGCAGUAAUUUGAGCUCAAAUGCCUUCUAAUUCCUUCACAGCCUGCUUGUUCUACUAGGAUUCUCCACUAACACCAUUUCUGCCUGGUGCCUGUGCCCUUUUGCUGGAGCAGCCACAGACAACUGCCUGAUGGAGAAAGAAUGAЖCGCUCUGCCUUGCUUAUGCUAUCGAUGGGAAUAAAGCUAЖCUGUGUUUCUUCUAUUAUAUGGGAAACCUGGAUUAAUCAAGCUGUAUUCUAGUACCAAGAGUCGUAUUGUCUCUUGUGGUCUGЖCUCAUCACAUGUAAACGUЖCUGCAGCUUUGCUAUUAAUGCAGAGUGGUUUUUUUUUUUUUGUUUUUGUUUUUUGCCCCUUUCCCAAACACUGAAAGAAUUGUUAACCUCUGAGCUUCAUUUUCAGGAUUUGUGCUGAGCUCUAGAUCUUUUUUCUGUGAAUAGUAUCUGCAUUAAACCAGUGAUGAAGAAAUGAAGACAAAUUAGAAGUGGAAACAGAAUAGUGAGAUUUUAUUUUUUAUUUUCAAUUAUAAGCAAAACAGCUACUGGUAACUAUAUGACCUUGCAGGCAAGAGUGGGUAUCGCUGUGAUCAUCUCUGUCACAGCAGUUGUUUCUCAUUUCAUUCUAUAUUGUGUGGUGUUGUGUCACCAAAAACAAUGAUUGUUUUGUGCAAGUAAAUUUCAGAGAUAGAGCAAUAAGACUAUUUUGGUAGAGGAAAAAUAUUUUUAAAUGAGCUUGGACUCAGUUUUAGUUAUUGACAUGUUGGUGUGAAAUUUCUUCUUAAGUAUUGCAGUAAUCCAACAGAAAUAAUAGAAUUUCGUUAUAUUUAGGAAGUUACAAAUUAUGUAGUCAUAAUUUUAAACUUGUUUUUCCAGUAGUACUUAUUAACUUUAAAAAAAAAAAAAACCCAGCUGUGCUGUUCAGAGAAUGUUUGUAAGUGUUGUACAGAAGAGGAGGAAAAACUACUUGUGCUCUUCCAACUGUGACUUUUAUCACAUAGCUUGGAAUUUAGUGUUUUAAAAGAUCGAAUGAGUCGAGUGUGUAUUGUUGUUUUGGAGGAGGUAGAAGAUGAAUCUCCUGCAUUCAUUUCUAAAUUGCCACAGGAAAAUAAAUCCCUACAUUCUCCACCUUCUGGAAAUGUAUUGCCAUCACUGGUGCAAGCUAUAUUUAACGGAGAUCCUGAUGAAGUUCGAGCACUAAUAUUUAAGAAAGAAGAUGUUAACUUUCAGCAGUACUUCUGGAAUAGAAAUUCUAAACAUUAGCCUGCCGAACAACUGGAUUGCAUUUGAUGAUUACAAUUGUCCAGUCACAGAUGGCAUCACCUCUACUUUUUAUUAUUAAUAUUAGUUUUAAUUGCCAAAUCAUAAUUGUAUAUAUUUGUAGAGUACAAUGUAAUAUUUUGGUAUAUGUAUACAAUGUGGGAUGAUUAAAUCAAGCUAAUAUAUCCA
Sequence (SHORT NAMES ENCODING) AGAUCUCUGGUAAGUGUAACAUGUGAGCAUUACUAGGCAUUUCAUCCUGUGGGUCUGCAGUCUUUGCUCUUCAGACUGUUGCUCCGUUGGAAUGCUUCUGUGGGm6ACUGAUACUGAGGUUCUAUAGAUAUUUUUUAAGGm6ACCUACUCAUUUGGGGAUGUCAGUGGUGUUUUGCAAGAUCAUCUGAGGAACAGGAAAGCAUUUGAAAUCUGAAAAGGAUAACUGUGGCGGUUUUCACAGUGGAAGGAAACUAUAUUGGCAAAGAGGCAGAUGACUGAAUAAAGUAGUUGGCUCAAAGAAGAUGCACAGUCUGCUAUUUUUUUCUCUGAAUGAAGm6ACUGUUUAAUGGAAGCUGUAUUCAUGUGGAGAUCAAAGGAAACACUGGAAUGAUACACUACUAUGUUUUUCCCCCCCCUUUUUUUUUUUAAAGAAAACAAAAAGCCUGAAGCAGUAAUUUGAGCUCAAAUGCCUUCUAAUUCCUUCACAGCCUGCUUGUUCUACUAGGAUUCUCCACUAACACCAUUUCUGCCUGGUGCCUGUGCCCUUUUGCUGGAGCAGCCACAGACAACUGCCUGAUGGAGAAAGAAUGAm6ACGCUCUGCCUUGCUUAUGCUAUCGAUGGGAAUAAAGCUAm6ACUGUGUUUCUUCUAUUAUAUGGGAAACCUGGAUUAAUCAAGCUGUAUUCUAGUACCAAGAGUCGUAUUGUCUCUUGUGGUCUGm6ACUCAUCACAUGUAAACGUm6ACUGCAGCUUUGCUAUUAAUGCAGAGUGGUUUUUUUUUUUUUGUUUUUGUUUUUUGCCCCUUUCCCAAACACUGAAAGAAUUGUUAACCUCUGAGCUUCAUUUUCAGGAUUUGUGCUGAGCUCUAGAUCUUUUUUCUGUGAAUAGUAUCUGCAUUAAACCAGUGAUGAAGAAAUGAAGACAAAUUAGAAGUGGAAACAGAAUAGUGAGAUUUUAUUUUUUAUUUUCAAUUAUAAGCAAAACAGCUACUGGUAACUAUAUGACCUUGCAGGCAAGAGUGGGUAUCGCUGUGAUCAUCUCUGUCACAGCAGUUGUUUCUCAUUUCAUUCUAUAUUGUGUGGUGUUGUGUCACCAAAAACAAUGAUUGUUUUGUGCAAGUAAAUUUCAGAGAUAGAGCAAUAAGACUAUUUUGGUAGAGGAAAAAUAUUUUUAAAUGAGCUUGGACUCAGUUUUAGUUAUUGACAUGUUGGUGUGAAAUUUCUUCUUAAGUAUUGCAGUAAUCCAACAGAAAUAAUAGAAUUUCGUUAUAUUUAGGAAGUUACAAAUUAUGUAGUCAUAAUUUUAAACUUGUUUUUCCAGUAGUACUUAUUAACUUUAAAAAAAAAAAAAACCCAGCUGUGCUGUUCAGAGAAUGUUUGUAAGUGUUGUACAGAAGAGGAGGAAAAACUACUUGUGCUCUUCCAACUGUGACUUUUAUCACAUAGCUUGGAAUUUAGUGUUUUAAAAGAUCGAAUGAGUCGAGUGUGUAUUGUUGUUUUGGAGGAGGUAGAAGAUGAAUCUCCUGCAUUCAUUUCUAAAUUGCCACAGGAAAAUAAAUCCCUACAUUCUCCACCUUCUGGAAAUGUAUUGCCAUCACUGGUGCAAGCUAUAUUUAACGGAGAUCCUGAUGAAGUUCGAGCACUAAUAUUUAAGAAAGAAGAUGUUAACUUUCAGCAGUACUUCUGGAAUAGAAAUUCUAAACAUUAGCCUGCCGAACAACUGGAUUGCAUUUGAUGAUUACAAUUGUCCAGUCACAGAUGGCAUCACCUCUACUUUUUAUUAUUAAUAUUAGUUUUAAUUGCCAAAUCAUAAUUGUAUAUAUUUGUAGAGUACAAUGUAAUAUUUUGGUAUAUGUAUACAAUGUGGGAUGAUUAAAUCAAGCUAAUAUAUCCA
Sequence (MODOMICS CODE ENCODING) AGAUCUCUGGUAAGUGUAACAUGUGAGCAUUACUAGGCAUUUCAUCCUGUGGGUCUGCAGUCUUUGCUCUUCAGACUGUUGCUCCGUUGGAAUGCUUCUGUGGG2000000006ACUGAUACUGAGGUUCUAUAGAUAUUUUUUAAGG2000000006ACCUACUCAUUUGGGGAUGUCAGUGGUGUUUUGCAAGAUCAUCUGAGGAACAGGAAAGCAUUUGAAAUCUGAAAAGGAUAACUGUGGCGGUUUUCACAGUGGAAGGAAACUAUAUUGGCAAAGAGGCAGAUGACUGAAUAAAGUAGUUGGCUCAAAGAAGAUGCACAGUCUGCUAUUUUUUUCUCUGAAUGAAG2000000006ACUGUUUAAUGGAAGCUGUAUUCAUGUGGAGAUCAAAGGAAACACUGGAAUGAUACACUACUAUGUUUUUCCCCCCCCUUUUUUUUUUUAAAGAAAACAAAAAGCCUGAAGCAGUAAUUUGAGCUCAAAUGCCUUCUAAUUCCUUCACAGCCUGCUUGUUCUACUAGGAUUCUCCACUAACACCAUUUCUGCCUGGUGCCUGUGCCCUUUUGCUGGAGCAGCCACAGACAACUGCCUGAUGGAGAAAGAAUGA2000000006ACGCUCUGCCUUGCUUAUGCUAUCGAUGGGAAUAAAGCUA2000000006ACUGUGUUUCUUCUAUUAUAUGGGAAACCUGGAUUAAUCAAGCUGUAUUCUAGUACCAAGAGUCGUAUUGUCUCUUGUGGUCUG2000000006ACUCAUCACAUGUAAACGU2000000006ACUGCAGCUUUGCUAUUAAUGCAGAGUGGUUUUUUUUUUUUUGUUUUUGUUUUUUGCCCCUUUCCCAAACACUGAAAGAAUUGUUAACCUCUGAGCUUCAUUUUCAGGAUUUGUGCUGAGCUCUAGAUCUUUUUUCUGUGAAUAGUAUCUGCAUUAAACCAGUGAUGAAGAAAUGAAGACAAAUUAGAAGUGGAAACAGAAUAGUGAGAUUUUAUUUUUUAUUUUCAAUUAUAAGCAAAACAGCUACUGGUAACUAUAUGACCUUGCAGGCAAGAGUGGGUAUCGCUGUGAUCAUCUCUGUCACAGCAGUUGUUUCUCAUUUCAUUCUAUAUUGUGUGGUGUUGUGUCACCAAAAACAAUGAUUGUUUUGUGCAAGUAAAUUUCAGAGAUAGAGCAAUAAGACUAUUUUGGUAGAGGAAAAAUAUUUUUAAAUGAGCUUGGACUCAGUUUUAGUUAUUGACAUGUUGGUGUGAAAUUUCUUCUUAAGUAUUGCAGUAAUCCAACAGAAAUAAUAGAAUUUCGUUAUAUUUAGGAAGUUACAAAUUAUGUAGUCAUAAUUUUAAACUUGUUUUUCCAGUAGUACUUAUUAACUUUAAAAAAAAAAAAAACCCAGCUGUGCUGUUCAGAGAAUGUUUGUAAGUGUUGUACAGAAGAGGAGGAAAAACUACUUGUGCUCUUCCAACUGUGACUUUUAUCACAUAGCUUGGAAUUUAGUGUUUUAAAAGAUCGAAUGAGUCGAGUGUGUAUUGUUGUUUUGGAGGAGGUAGAAGAUGAAUCUCCUGCAUUCAUUUCUAAAUUGCCACAGGAAAAUAAAUCCCUACAUUCUCCACCUUCUGGAAAUGUAUUGCCAUCACUGGUGCAAGCUAUAUUUAACGGAGAUCCUGAUGAAGUUCGAGCACUAAUAUUUAAGAAAGAAGAUGUUAACUUUCAGCAGUACUUCUGGAAUAGAAAUUCUAAACAUUAGCCUGCCGAACAACUGGAUUGCAUUUGAUGAUUACAAUUGUCCAGUCACAGAUGGCAUCACCUCUACUUUUUAUUAUUAAUAUUAGUUUUAAUUGCCAAAUCAUAAUUGUAUAUAUUUGUAGAGUACAAUGUAAUAUUUUGGUAUAUGUAUACAAUGUGGGAUGAUUAAAUCAAGCUAAUAUAUCCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 105 139 333 586 626 710 729
Modification Positions m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:15797875:- 3:15797841:- 3:15797647:- 3:15797394:- 3:15797354:- 3:15797270:- 3:15797251:-
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
WdHxkJGRmFxn
aJksAshEgQ8U
Lny8GcCeVGc9
Lny8GcCeVGc9
UKen6WEino9G
VL7zkHvkfkoB
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
Lny8GcCeVGc9
UKen6WEino9G