Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000445466
Gene ID: ENSG00000229619
Gene Name: MBNL1-AS1
Sequence (UNICHARACTER ENCODING) AGAUGAAAACCGGGCGGGAUGGCAGCCCCGGGGCCAGGGAUGCGGGAGCCGCCGGGAAGACCCGCGCGCCGCUCGACUCAGAGGGACUCACACCUUCCCCCGACAAAGAGGCGGCCCCACUGUCGACCAAGUGCCCAAGGCAUUGUGGGAGUCAUGAUUCCAAGAUGCCCGCGACGGAAAAUGGAЖCUUGUCAGCUCCUUGUCAUGGGAGCAUUGUGGGCGCCACAACUCAUUCAGCUGCAGUGAAAAGЖCUGUUGCAUGUCGCUGUGCAGCCUCUUAUCGCCGAGGUCUGGCUUCCGCUGCUGCUGCGCGGCCCCUCCCCCGCCCGCCCAGCCCCACCAGGAAGCCCAGGGCGGЖCUCGUCGAGCUCCUAAUGCACGCGGCGGCGAGAAAAACGCUCUUCAACUUUCCGCCGGCGCCCUCCCGCGCUUCCCCGGGCCACAGGGUCGCCUGUCAACCGGЖCAGAGCCCGCAAGAGCGGGUCAUGGGCGGUCGCCCAGCGGCGCCGAGAGCAGGAGGAAGCCGGAGCCCGCGCGGGCGCCGUGGAUCCCCUCGGCCUCCCGUUGGUAUCUUCCAUCUCAUGCGUUCAGCAUUGUAACCUCGCGGCGGGCGUGCAGACCGGACGCCCUCCCGCUUCUUCUACCGACUGCUAGGCACACCAGUGGGUUCAUUUUGAAAGAGGCCCUUGCACCGGGCUUUGCAAGGAAGCCGGCAAGGUUAGAUUGAAGGUUAGAAGCCAAUUAGЖCUAGAAUCCUGCGAUCUGGUGAGЖCUGCCGCCUUAAAAUGCACCAAACAGUUUUUGAЖCCUGGAGGGCUAACAGGCGGGAAAAACAUCUGCAAGЖCUGCCACCGUGUAUUUUUCUCAAGUAACAGGCUAUCCACAGUUUUGGAAUUCCUUAGUGAAЖCUGUCACACAGGCACAAACACAUGUCAGCUUUCCUUCUAGUUUGUAAAUAAUAUUUGUAAUUUACAGGCCACUGUAUUCCCAACUUUGCACCAUGUGA
Sequence (SHORT NAMES ENCODING) AGAUGAAAACCGGGCGGGAUGGCAGCCCCGGGGCCAGGGAUGCGGGAGCCGCCGGGAAGACCCGCGCGCCGCUCGACUCAGAGGGACUCACACCUUCCCCCGACAAAGAGGCGGCCCCACUGUCGACCAAGUGCCCAAGGCAUUGUGGGAGUCAUGAUUCCAAGAUGCCCGCGACGGAAAAUGGAm6ACUUGUCAGCUCCUUGUCAUGGGAGCAUUGUGGGCGCCACAACUCAUUCAGCUGCAGUGAAAAGm6ACUGUUGCAUGUCGCUGUGCAGCCUCUUAUCGCCGAGGUCUGGCUUCCGCUGCUGCUGCGCGGCCCCUCCCCCGCCCGCCCAGCCCCACCAGGAAGCCCAGGGCGGm6ACUCGUCGAGCUCCUAAUGCACGCGGCGGCGAGAAAAACGCUCUUCAACUUUCCGCCGGCGCCCUCCCGCGCUUCCCCGGGCCACAGGGUCGCCUGUCAACCGGm6ACAGAGCCCGCAAGAGCGGGUCAUGGGCGGUCGCCCAGCGGCGCCGAGAGCAGGAGGAAGCCGGAGCCCGCGCGGGCGCCGUGGAUCCCCUCGGCCUCCCGUUGGUAUCUUCCAUCUCAUGCGUUCAGCAUUGUAACCUCGCGGCGGGCGUGCAGACCGGACGCCCUCCCGCUUCUUCUACCGACUGCUAGGCACACCAGUGGGUUCAUUUUGAAAGAGGCCCUUGCACCGGGCUUUGCAAGGAAGCCGGCAAGGUUAGAUUGAAGGUUAGAAGCCAAUUAGm6ACUAGAAUCCUGCGAUCUGGUGAGm6ACUGCCGCCUUAAAAUGCACCAAACAGUUUUUGAm6ACCUGGAGGGCUAACAGGCGGGAAAAACAUCUGCAAGm6ACUGCCACCGUGUAUUUUUCUCAAGUAACAGGCUAUCCACAGUUUUGGAAUUCCUUAGUGAAm6ACUGUCACACAGGCACAAACACAUGUCAGCUUUCCUUCUAGUUUGUAAAUAAUAUUUGUAAUUUACAGGCCACUGUAUUCCCAACUUUGCACCAUGUGA
Sequence (MODOMICS CODE ENCODING) AGAUGAAAACCGGGCGGGAUGGCAGCCCCGGGGCCAGGGAUGCGGGAGCCGCCGGGAAGACCCGCGCGCCGCUCGACUCAGAGGGACUCACACCUUCCCCCGACAAAGAGGCGGCCCCACUGUCGACCAAGUGCCCAAGGCAUUGUGGGAGUCAUGAUUCCAAGAUGCCCGCGACGGAAAAUGGA2000000006ACUUGUCAGCUCCUUGUCAUGGGAGCAUUGUGGGCGCCACAACUCAUUCAGCUGCAGUGAAAAG2000000006ACUGUUGCAUGUCGCUGUGCAGCCUCUUAUCGCCGAGGUCUGGCUUCCGCUGCUGCUGCGCGGCCCCUCCCCCGCCCGCCCAGCCCCACCAGGAAGCCCAGGGCGG2000000006ACUCGUCGAGCUCCUAAUGCACGCGGCGGCGAGAAAAACGCUCUUCAACUUUCCGCCGGCGCCCUCCCGCGCUUCCCCGGGCCACAGGGUCGCCUGUCAACCGG2000000006ACAGAGCCCGCAAGAGCGGGUCAUGGGCGGUCGCCCAGCGGCGCCGAGAGCAGGAGGAAGCCGGAGCCCGCGCGGGCGCCGUGGAUCCCCUCGGCCUCCCGUUGGUAUCUUCCAUCUCAUGCGUUCAGCAUUGUAACCUCGCGGCGGGCGUGCAGACCGGACGCCCUCCCGCUUCUUCUACCGACUGCUAGGCACACCAGUGGGUUCAUUUUGAAAGAGGCCCUUGCACCGGGCUUUGCAAGGAAGCCGGCAAGGUUAGAUUGAAGGUUAGAAGCCAAUUAG2000000006ACUAGAAUCCUGCGAUCUGGUGAG2000000006ACUGCCGCCUUAAAAUGCACCAAACAGUUUUUGA2000000006ACCUGGAGGGCUAACAGGCGGGAAAAACAUCUGCAAG2000000006ACUGCCACCGUGUAUUUUUCUCAAGUAACAGGCUAUCCACAGUUUUGGAAUUCCUUAGUGAA2000000006ACUGUCACACAGGCACAAACACAUGUCAGCUUUCCUUCUAGUUUGUAAAUAAUAUUUGUAAUUUACAGGCCACUGUAUUCCCAACUUUGCACCAUGUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 186 250 356 460 742 766 800 837 899
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:152268995:- 3:152268931:- 3:152268825:- 3:152268721:- 3:152268439:- 3:152268415:- 3:152268381:- 3:152268344:- 3:152268282:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
Ap2q43bQLNek
Mg9GixDBFQAT
msuJfBpJvM5H
QmcpiJ88DBDn
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6AyXsheySjfx
Ap2q43bQLNek
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
6AyXsheySjfx
Ap2q43bQLNek
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
6AyXsheySjfx
Ap2q43bQLNek
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
6AyXsheySjfx
Ap2q43bQLNek
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
6AyXsheySjfx
Ap2q43bQLNek
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML