General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000265062
Gene ID:	ENSG00000075785
Gene Name:	RAB7A
Sequence (UNICHARACTER ENCODING)	AGUCUUGGCCAPAAAGCCUGAGGCGGCGGCAGCGGCGGAGUUGGCGGCUUGGAGAGCUCGGGAGAGUUCCCUGGAACCAGAACUUGGACCUUCUCGCUUCUGUCCUCCGUUUAGUCUCCPCCUCGGCGGGAGCCCUCGCGACGCGCCCGGCBCGGAGCCCCCAGCGCAGCGGCCGCGUUUGAAGGAUGACCUCUAGGAAGAAAGUGUUGCUGAAGGUUAUCAPCCUGGGAGAUUCUGGAGUCGGGAAGACAUCACUCAUGAACCAGUAUGUGAAUAAGAAAUUCAGCAAUCAGUACAAAGCCACAAUAGGAGCUGACUUUCUGACCAAGGAGGUGAUGGUGGAUGACAGGCUAGUCACAAUGCAGAUAUGGGACACAGCAGGACAGGAACGGUUCCAGUCUCUCGGUGUGGCCUUCUACЖGAGGUGCAGACUGCUGCGUUCUGGUAUUUGAUGUGACUGCCCCCAACACAUUCAAAACCCUAGAUAGCUGGAGAGAUGAGUUUCUCAPCCAGGCCAGUCCCCGAGAUCCUGAAAACUUCCCAUUUGUUGUGUUGGGAAACAAGAUUGACCUCGAAAACAGACAAGUGGCCACAAAGCGGGCACAGGCCUGGUGCUACAGCAAAAACAACAUUCCCUACUUUGAGЖCCAGUGCCAAGGAGGCCAUCAACGUGGAGCAGGCGUUCCAGACGAUUGCACGGAAUGCACUUAAGCAGGAAACGGAGGUGGAGCUGUACAACGAAUUUCCUGAACCUAUCAAACUGGACAAGAAUGACCGGGCCAAGGCCUCGGCAGAAAGCUGCAGUUGCUGAGGGGGCAGUGAGAGUUGAGCACAGAGUCCUUCACAAACCAAGAACACACGUAGGCCUUCAACACAAUUCCCCUCUCCUCUUCCAAACAAAACAUACAUUGAUCUCUCACAPCCAGCUGCCAAAAGAAAACCCCAUCAAACACAGUUACACCCCACAUAUCUCUCACACACACACACACACGCACACACACACACACAGAUCUGACGUAAUCAAACUCCAGCCCUUGCCCGUGAUGGCUCCUUGGGGUCUGCCUGCCCACCCACAUGAGCCCGCGAGUAUGGCAGCAGGACAAGCCAGCGGUGGAAGUCAUUCUGAUAUGGAGUUGGCAUUGGAAGCUUAUUCUUUUUGUUCACUGGAGAGAGAGAGAЖCUGUUUACAGUUAAUCUGUGUCUAAUUAUCUGAUUUUUUUUAUUGGUCUUGUGGUCUUUUUACCCCCCCUUUCCCCUCCCUCCUUGAAGGCUACCCCUUGGGAAGGCUGGUGCCCCAUGCCCCAUUACЖGGCUCACACCCAGUCUGAUCAGGCUGAGUUUUGUAUGUAUCUAUCUGUUAAUGCUUGUUACUUUUAЖCUAAUCAGAUCUUUUUACAGUAUCCAUUUAUUAUGUAAUGCUUCUUAGAAAAGAAUCUUAUAGUACAUGUUAAUAUAUGCAACCAAUUAAAAUGUAUAAAUUAGUGUAAGAAAUUCUUGGAUUAUGUGUUUAAGUCCUGUAAUGCAGGCCUGUAAGGUGGAGGGUUGAACCCUGUUUGGAUUGCAGAGUGUUACUCAGAAUUGGGAAAUCCAGCUA#CGGCAGUAUUCUGUACAGUAGACACAAGAAUUAUGUACGCCUUUUAUCAAAGACUUAAGAGCCAAAAAGCUUUUCAUCUCUCCAGGGGGAAAACUGUCUAGUUCCCUUCUGUGUCUAAAUUUUCCAAAACGUUGAUPUGCAUAAUACAGUGGUAUGUGCAAUGGAUAAAUUGCCGUUAUUUCAAAAAUUAAAAUUCUCAUUUUCUUUCUUUUUUUUCCCCCCUGCUCCACACUUCAAAACUCCCGUUAGAUCAGCAUUCUACUACAAGAGUGAAAGGAAAACCCUAЖCAGAUCUGUCCUAGUGAUUUUACCUUUGUUCUAGAAGGCGCUCCUUUCAGGGUUGUGGUAUUCUUAGGUUAGCGGAGCUUUUUCCUCUUUUCCCCACCCAUCUCCCCAAUAUUGCCCAUUAUUAAUUAACCUCUUUCUUUGGUUGGAACCCUGGCAGUUCUGCUCCCUUCCUAGGAUCUGCCCCUGCAUUGUAGCUUGCUUAACGGAGCACUUCUCCUUUUUCCAAAGGUCUACAUUCUAGGGUGUGGGCUGAGUUCUUCUGUAAAGAGAUGAACGCAAUGCCAAUAAAAUUGAACAAGAACAAUGAU
Sequence (SHORT NAMES ENCODING)	AGUCUUGGCCAYAAAGCCUGAGGCGGCGGCAGCGGCGGAGUUGGCGGCUUGGAGAGCUCGGGAGAGUUCCCUGGAACCAGAACUUGGACCUUCUCGCUUCUGUCCUCCGUUUAGUCUCCYCCUCGGCGGGAGCCCUCGCGACGCGCCCGGCCmCGGAGCCCCCAGCGCAGCGGCCGCGUUUGAAGGAUGACCUCUAGGAAGAAAGUGUUGCUGAAGGUUAUCAYCCUGGGAGAUUCUGGAGUCGGGAAGACAUCACUCAUGAACCAGUAUGUGAAUAAGAAAUUCAGCAAUCAGUACAAAGCCACAAUAGGAGCUGACUUUCUGACCAAGGAGGUGAUGGUGGAUGACAGGCUAGUCACAAUGCAGAUAUGGGACACAGCAGGACAGGAACGGUUCCAGUCUCUCGGUGUGGCCUUCUACm6AGAGGUGCAGACUGCUGCGUUCUGGUAUUUGAUGUGACUGCCCCCAACACAUUCAAAACCCUAGAUAGCUGGAGAGAUGAGUUUCUCAYCCAGGCCAGUCCCCGAGAUCCUGAAAACUUCCCAUUUGUUGUGUUGGGAAACAAGAUUGACCUCGAAAACAGACAAGUGGCCACAAAGCGGGCACAGGCCUGGUGCUACAGCAAAAACAACAUUCCCUACUUUGAGm6ACCAGUGCCAAGGAGGCCAUCAACGUGGAGCAGGCGUUCCAGACGAUUGCACGGAAUGCACUUAAGCAGGAAACGGAGGUGGAGCUGUACAACGAAUUUCCUGAACCUAUCAAACUGGACAAGAAUGACCGGGCCAAGGCCUCGGCAGAAAGCUGCAGUUGCUGAGGGGGCAGUGAGAGUUGAGCACAGAGUCCUUCACAAACCAAGAACACACGUAGGCCUUCAACACAAUUCCCCUCUCCUCUUCCAAACAAAACAUACAUUGAUCUCUCACAYCCAGCUGCCAAAAGAAAACCCCAUCAAACACAGUUACACCCCACAUAUCUCUCACACACACACACACACGCACACACACACACACAGAUCUGACGUAAUCAAACUCCAGCCCUUGCCCGUGAUGGCUCCUUGGGGUCUGCCUGCCCACCCACAUGAGCCCGCGAGUAUGGCAGCAGGACAAGCCAGCGGUGGAAGUCAUUCUGAUAUGGAGUUGGCAUUGGAAGCUUAUUCUUUUUGUUCACUGGAGAGAGAGAGAm6ACUGUUUACAGUUAAUCUGUGUCUAAUUAUCUGAUUUUUUUUAUUGGUCUUGUGGUCUUUUUACCCCCCCUUUCCCCUCCCUCCUUGAAGGCUACCCCUUGGGAAGGCUGGUGCCCCAUGCCCCAUUACm6AGGCUCACACCCAGUCUGAUCAGGCUGAGUUUUGUAUGUAUCUAUCUGUUAAUGCUUGUUACUUUUAm6ACUAAUCAGAUCUUUUUACAGUAUCCAUUUAUUAUGUAAUGCUUCUUAGAAAAGAAUCUUAUAGUACAUGUUAAUAUAUGCAACCAAUUAAAAUGUAUAAAUUAGUGUAAGAAAUUCUUGGAUUAUGUGUUUAAGUCCUGUAAUGCAGGCCUGUAAGGUGGAGGGUUGAACCCUGUUUGGAUUGCAGAGUGUUACUCAGAAUUGGGAAAUCCAGCUAGmCGGCAGUAUUCUGUACAGUAGACACAAGAAUUAUGUACGCCUUUUAUCAAAGACUUAAGAGCCAAAAAGCUUUUCAUCUCUCCAGGGGGAAAACUGUCUAGUUCCCUUCUGUGUCUAAAUUUUCCAAAACGUUGAUYUGCAUAAUACAGUGGUAUGUGCAAUGGAUAAAUUGCCGUUAUUUCAAAAAUUAAAAUUCUCAUUUUCUUUCUUUUUUUUCCCCCCUGCUCCACACUUCAAAACUCCCGUUAGAUCAGCAUUCUACUACAAGAGUGAAAGGAAAACCCUAm6ACAGAUCUGUCCUAGUGAUUUUACCUUUGUUCUAGAAGGCGCUCCUUUCAGGGUUGUGGUAUUCUUAGGUUAGCGGAGCUUUUUCCUCUUUUCCCCACCCAUCUCCCCAAUAUUGCCCAUUAUUAAUUAACCUCUUUCUUUGGUUGGAACCCUGGCAGUUCUGCUCCCUUCCUAGGAUCUGCCCCUGCAUUGUAGCUUGCUUAACGGAGCACUUCUCCUUUUUCCAAAGGUCUACAUUCUAGGGUGUGGGCUGAGUUCUUCUGUAAAGAGAUGAACGCAAUGCCAAUAAAAUUGAACAAGAACAAUGAU
Sequence (MODOMICS CODE ENCODING)	AGUCUUGGCCA2000000009UAAAGCCUGAGGCGGCGGCAGCGGCGGAGUUGGCGGCUUGGAGAGCUCGGGAGAGUUCCCUGGAACCAGAACUUGGACCUUCUCGCUUCUGUCCUCCGUUUAGUCUCC2000000009UCCUCGGCGGGAGCCCUCGCGACGCGCCCGGC2000000090CCGGAGCCCCCAGCGCAGCGGCCGCGUUUGAAGGAUGACCUCUAGGAAGAAAGUGUUGCUGAAGGUUAUCA2000000009UCCUGGGAGAUUCUGGAGUCGGGAAGACAUCACUCAUGAACCAGUAUGUGAAUAAGAAAUUCAGCAAUCAGUACAAAGCCACAAUAGGAGCUGACUUUCUGACCAAGGAGGUGAUGGUGGAUGACAGGCUAGUCACAAUGCAGAUAUGGGACACAGCAGGACAGGAACGGUUCCAGUCUCUCGGUGUGGCCUUCUAC2000000006AGAGGUGCAGACUGCUGCGUUCUGGUAUUUGAUGUGACUGCCCCCAACACAUUCAAAACCCUAGAUAGCUGGAGAGAUGAGUUUCUCA2000000009UCCAGGCCAGUCCCCGAGAUCCUGAAAACUUCCCAUUUGUUGUGUUGGGAAACAAGAUUGACCUCGAAAACAGACAAGUGGCCACAAAGCGGGCACAGGCCUGGUGCUACAGCAAAAACAACAUUCCCUACUUUGAG2000000006ACCAGUGCCAAGGAGGCCAUCAACGUGGAGCAGGCGUUCCAGACGAUUGCACGGAAUGCACUUAAGCAGGAAACGGAGGUGGAGCUGUACAACGAAUUUCCUGAACCUAUCAAACUGGACAAGAAUGACCGGGCCAAGGCCUCGGCAGAAAGCUGCAGUUGCUGAGGGGGCAGUGAGAGUUGAGCACAGAGUCCUUCACAAACCAAGAACACACGUAGGCCUUCAACACAAUUCCCCUCUCCUCUUCCAAACAAAACAUACAUUGAUCUCUCACA2000000009UCCAGCUGCCAAAAGAAAACCCCAUCAAACACAGUUACACCCCACAUAUCUCUCACACACACACACACACGCACACACACACACACAGAUCUGACGUAAUCAAACUCCAGCCCUUGCCCGUGAUGGCUCCUUGGGGUCUGCCUGCCCACCCACAUGAGCCCGCGAGUAUGGCAGCAGGACAAGCCAGCGGUGGAAGUCAUUCUGAUAUGGAGUUGGCAUUGGAAGCUUAUUCUUUUUGUUCACUGGAGAGAGAGAGA2000000006ACUGUUUACAGUUAAUCUGUGUCUAAUUAUCUGAUUUUUUUUAUUGGUCUUGUGGUCUUUUUACCCCCCCUUUCCCCUCCCUCCUUGAAGGCUACCCCUUGGGAAGGCUGGUGCCCCAUGCCCCAUUAC2000000006AGGCUCACACCCAGUCUGAUCAGGCUGAGUUUUGUAUGUAUCUAUCUGUUAAUGCUUGUUACUUUUA2000000006ACUAAUCAGAUCUUUUUACAGUAUCCAUUUAUUAUGUAAUGCUUCUUAGAAAAGAAUCUUAUAGUACAUGUUAAUAUAUGCAACCAAUUAAAAUGUAUAAAUUAGUGUAAGAAAUUCUUGGAUUAUGUGUUUAAGUCCUGUAAUGCAGGCCUGUAAGGUGGAGGGUUGAACCCUGUUUGGAUUGCAGAGUGUUACUCAGAAUUGGGAAAUCCAGCUA2000000090GCGGCAGUAUUCUGUACAGUAGACACAAGAAUUAUGUACGCCUUUUAUCAAAGACUUAAGAGCCAAAAAGCUUUUCAUCUCUCCAGGGGGAAAACUGUCUAGUUCCCUUCUGUGUCUAAAUUUUCCAAAACGUUGAU2000000009UUGCAUAAUACAGUGGUAUGUGCAAUGGAUAAAUUGCCGUUAUUUCAAAAAUUAAAAUUCUCAUUUUCUUUCUUUUUUUUCCCCCCUGCUCCACACUUCAAAACUCCCGUUAGAUCAGCAUUCUACUACAAGAGUGAAAGGAAAACCCUA2000000006ACAGAUCUGUCCUAGUGAUUUUACCUUUGUUCUAGAAGGCGCUCCUUUCAGGGUUGUGGUAUUCUUAGGUUAGCGGAGCUUUUUCCUCUUUUCCCCACCCAUCUCCCCAAUAUUGCCCAUUAUUAAUUAACCUCUUUCUUUGGUUGGAACCCUGGCAGUUCUGCUCCCUUCCUAGGAUCUGCCCCUGCAUUGUAGCUUGCUUAACGGAGCACUUCUCCUUUUUCCAAAGGUCUACAUUCUAGGGUGUGGGCUGAGUUCUUCUGUAAAGAGAUGAACGCAAUGCCAAUAAAAUUGAACAAGAACAAUGAU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	12	120	152	223	420	508	645	920	1177	1306	1373	1590	1727	1877
Modification Positions	Y	Y	Cm	Y	m6A	Y	m6A	Y	m6A	m6A	m6A	Gm	Y	m6A
Genomic Coordinates	3:128726194:+	3:128726302:+	3:128726334:+	3:128795405:+	3:128806426:+	3:128806514:+	3:128807603:+	3:128813533:+	3:128813790:+	3:128813919:+	3:128813986:+	3:128814203:+	3:128814340:+	3:128814490:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8