General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000305366
Gene ID:	ENSG00000169908
Gene Name:	TM4SF1
Sequence (UNICHARACTER ENCODING)	AGUGGUGUUUGCUUUCUCCACCAGAAGGGCACACUUUCAUCUAAUUUGGGGUAUCACUGAGCUGAAGACAAAGAGAAGGGGGAGAAAACCUAGCAGACCACCAUGUGCUAUGGGAAGUGUGCACGAUGCAUCGGACAUUCUCUGGUGGGGCUCGCCCPCCUGUGCAUCGCGGCUAAUAUUUUGCUPUACUUUCCCAAUGGGGAAACAAAGUAUGCCUCCGAAAЖCCACCUCAGCCGCUUCGUGUGGUUCUUUUCUGGCAUCGUAGGAGGUGGCCUGCUGAUGCUCCUGCCAGCAUUUGUCUUCAUUGGGCUGGAACAGGAUGACUGCUGUGGCUGCUGUGGCCAUGAAAACUGUGGCAAACGAUGUGCGAUGCUUUCUUCUGUAUUGGCUGCUCUCAUUGGAAUUGCAGGAUCUGGCUACUGUGUCAUUGUGGCAGCCCUUGGCUUAGCAGAAGGACCACUAUGUCUUGAUUCCCUCGGCCAGUGGAACUACЖCCUUUGCCAGCACUGAGGGCCAGUACCUUCUGGAUACCUCCACAUGGUCCGAGUGCACUGAACCCAAGCACAUUGUGGAAUGGAAUGUAUCUCUGUUUUCUAUCCUCUUGGCUCUUGGUGGAAUUGAAUUCAUCUUGUGUCUUAUUCAAGUAAUAAAUGGAGUGCUUGGAGGCAUAUGUGGCUUUUGCUGCUCUCACCAACAGCAAUAUGACUGCUAAAAGAACCAACCCAGGACAGAGCCACAAUCUUCCUCUAUUUCAUUGUAAUUUAUAUAUUUCACUUGUAUUCAUUUGUAAAACUUUGUAUUAGUGUAACAUACUCCCCACAGUCUACUUUUACAAACGCCUGUAAAGACUGGCAUCUUCACAGGAUGUCAGUGUUUAAAUUUAGUAAACUUCUUUUUUGUUUGUUUAUUUGUUUUUGUUUUUUUUUAAGGAAUGAGGAAACAAЖCCACCCUCUGGGGGUAAUUUACAGACUGAGUGACAGUACUCAGUAUAUCUGAGAUAAACUCUAUAAUGUUUUGGAUAAAAAUAACAUUCCAAUCACUAUUGUAUAUAUGUGCAUGUAUUUUUUAAAUUAAAGAUGUCUAGUUGCUUUUUAUAAGACCAAGAAGGAGAAAAUCCGACAACCUGGAAAGAUUUUUGUUUUCACUGCUUGUAUGAUGUUUCCCAUUCAUACACCUAUAAAUCUCUAЖCAAGAGGCCCUUUGAACUGCCUUGUGUUCUGUGAGAAACAAAUAUUUACUUAGAGUGGAAGGЖCUGAUUGAGAAUGUUCCAAUCCAAAUGAAUGCAUCACAACUUACAAUGCUGCUCAUUGUUGUGAGUACUAUGAGAUUCAAAUUUUUCUAACAUAUGGAAAGCCUUUUGUCCUCCAAAGAUGAGUACUAGGGAUCAUGUGUUUAAAAAAAGAAAGGCUACGAUGACUGGGCAAGAAGAAAGAUGGGAAACUGAAUAAAGCAGUUGAUCAGCAUCAUUGGAACAUGGGGACGAGUGACGGCAGGAGGACCACGAGGAAAUACCCUCAAAACUAACUUGUUUACAACAAAAUAAAGUAUUCACUACCA
Sequence (SHORT NAMES ENCODING)	AGUGGUGUUUGCUUUCUCCACCAGAAGGGCACACUUUCAUCUAAUUUGGGGUAUCACUGAGCUGAAGACAAAGAGAAGGGGGAGAAAACCUAGCAGACCACCAUGUGCUAUGGGAAGUGUGCACGAUGCAUCGGACAUUCUCUGGUGGGGCUCGCCCYCCUGUGCAUCGCGGCUAAUAUUUUGCUYUACUUUCCCAAUGGGGAAACAAAGUAUGCCUCCGAAAm6ACCACCUCAGCCGCUUCGUGUGGUUCUUUUCUGGCAUCGUAGGAGGUGGCCUGCUGAUGCUCCUGCCAGCAUUUGUCUUCAUUGGGCUGGAACAGGAUGACUGCUGUGGCUGCUGUGGCCAUGAAAACUGUGGCAAACGAUGUGCGAUGCUUUCUUCUGUAUUGGCUGCUCUCAUUGGAAUUGCAGGAUCUGGCUACUGUGUCAUUGUGGCAGCCCUUGGCUUAGCAGAAGGACCACUAUGUCUUGAUUCCCUCGGCCAGUGGAACUACm6ACCUUUGCCAGCACUGAGGGCCAGUACCUUCUGGAUACCUCCACAUGGUCCGAGUGCACUGAACCCAAGCACAUUGUGGAAUGGAAUGUAUCUCUGUUUUCUAUCCUCUUGGCUCUUGGUGGAAUUGAAUUCAUCUUGUGUCUUAUUCAAGUAAUAAAUGGAGUGCUUGGAGGCAUAUGUGGCUUUUGCUGCUCUCACCAACAGCAAUAUGACUGCUAAAAGAACCAACCCAGGACAGAGCCACAAUCUUCCUCUAUUUCAUUGUAAUUUAUAUAUUUCACUUGUAUUCAUUUGUAAAACUUUGUAUUAGUGUAACAUACUCCCCACAGUCUACUUUUACAAACGCCUGUAAAGACUGGCAUCUUCACAGGAUGUCAGUGUUUAAAUUUAGUAAACUUCUUUUUUGUUUGUUUAUUUGUUUUUGUUUUUUUUUAAGGAAUGAGGAAACAAm6ACCACCCUCUGGGGGUAAUUUACAGACUGAGUGACAGUACUCAGUAUAUCUGAGAUAAACUCUAUAAUGUUUUGGAUAAAAAUAACAUUCCAAUCACUAUUGUAUAUAUGUGCAUGUAUUUUUUAAAUUAAAGAUGUCUAGUUGCUUUUUAUAAGACCAAGAAGGAGAAAAUCCGACAACCUGGAAAGAUUUUUGUUUUCACUGCUUGUAUGAUGUUUCCCAUUCAUACACCUAUAAAUCUCUAm6ACAAGAGGCCCUUUGAACUGCCUUGUGUUCUGUGAGAAACAAAUAUUUACUUAGAGUGGAAGGm6ACUGAUUGAGAAUGUUCCAAUCCAAAUGAAUGCAUCACAACUUACAAUGCUGCUCAUUGUUGUGAGUACUAUGAGAUUCAAAUUUUUCUAACAUAUGGAAAGCCUUUUGUCCUCCAAAGAUGAGUACUAGGGAUCAUGUGUUUAAAAAAAGAAAGGCUACGAUGACUGGGCAAGAAGAAAGAUGGGAAACUGAAUAAAGCAGUUGAUCAGCAUCAUUGGAACAUGGGGACGAGUGACGGCAGGAGGACCACGAGGAAAUACCCUCAAAACUAACUUGUUUACAACAAAAUAAAGUAUUCACUACCA
Sequence (MODOMICS CODE ENCODING)	AGUGGUGUUUGCUUUCUCCACCAGAAGGGCACACUUUCAUCUAAUUUGGGGUAUCACUGAGCUGAAGACAAAGAGAAGGGGGAGAAAACCUAGCAGACCACCAUGUGCUAUGGGAAGUGUGCACGAUGCAUCGGACAUUCUCUGGUGGGGCUCGCCC2000000009UCCUGUGCAUCGCGGCUAAUAUUUUGCU2000000009UUACUUUCCCAAUGGGGAAACAAAGUAUGCCUCCGAAA2000000006ACCACCUCAGCCGCUUCGUGUGGUUCUUUUCUGGCAUCGUAGGAGGUGGCCUGCUGAUGCUCCUGCCAGCAUUUGUCUUCAUUGGGCUGGAACAGGAUGACUGCUGUGGCUGCUGUGGCCAUGAAAACUGUGGCAAACGAUGUGCGAUGCUUUCUUCUGUAUUGGCUGCUCUCAUUGGAAUUGCAGGAUCUGGCUACUGUGUCAUUGUGGCAGCCCUUGGCUUAGCAGAAGGACCACUAUGUCUUGAUUCCCUCGGCCAGUGGAACUAC2000000006ACCUUUGCCAGCACUGAGGGCCAGUACCUUCUGGAUACCUCCACAUGGUCCGAGUGCACUGAACCCAAGCACAUUGUGGAAUGGAAUGUAUCUCUGUUUUCUAUCCUCUUGGCUCUUGGUGGAAUUGAAUUCAUCUUGUGUCUUAUUCAAGUAAUAAAUGGAGUGCUUGGAGGCAUAUGUGGCUUUUGCUGCUCUCACCAACAGCAAUAUGACUGCUAAAAGAACCAACCCAGGACAGAGCCACAAUCUUCCUCUAUUUCAUUGUAAUUUAUAUAUUUCACUUGUAUUCAUUUGUAAAACUUUGUAUUAGUGUAACAUACUCCCCACAGUCUACUUUUACAAACGCCUGUAAAGACUGGCAUCUUCACAGGAUGUCAGUGUUUAAAUUUAGUAAACUUCUUUUUUGUUUGUUUAUUUGUUUUUGUUUUUUUUUAAGGAAUGAGGAAACAA2000000006ACCACCCUCUGGGGGUAAUUUACAGACUGAGUGACAGUACUCAGUAUAUCUGAGAUAAACUCUAUAAUGUUUUGGAUAAAAAUAACAUUCCAAUCACUAUUGUAUAUAUGUGCAUGUAUUUUUUAAAUUAAAGAUGUCUAGUUGCUUUUUAUAAGACCAAGAAGGAGAAAAUCCGACAACCUGGAAAGAUUUUUGUUUUCACUGCUUGUAUGAUGUUUCCCAUUCAUACACCUAUAAAUCUCUA2000000006ACAAGAGGCCCUUUGAACUGCCUUGUGUUCUGUGAGAAACAAAUAUUUACUUAGAGUGGAAGG2000000006ACUGAUUGAGAAUGUUCCAAUCCAAAUGAAUGCAUCACAACUUACAAUGCUGCUCAUUGUUGUGAGUACUAUGAGAUUCAAAUUUUUCUAACAUAUGGAAAGCCUUUUGUCCUCCAAAGAUGAGUACUAGGGAUCAUGUGUUUAAAAAAAGAAAGGCUACGAUGACUGGGCAAGAAGAAAGAUGGGAAACUGAAUAAAGCAGUUGAUCAGCAUCAUUGGAACAUGGGGACGAGUGACGGCAGGAGGACCACGAGGAAAUACCCUCAAAACUAACUUGUUUACAACAAAAUAAAGUAUUCACUACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	158	186	224	493	943	1187	1250
Modification Positions	Y	Y	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	3:149377492:-	3:149377464:-	3:149377426:-	3:149375465:-	3:149369634:-	3:149369390:-	3:149369327:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ	bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ	bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ	3kRDPWwiRCgi L6w2k2VEv4EY	bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ	bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ