General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000280700
Gene ID:	ENSG00000151092
Gene Name:	NGLY1
Sequence (UNICHARACTER ENCODING)	AGUGUGGGACGCGGAGAGCGAGGGGCGGCGGCGGCGCCCGCUGGCGCUCAAGCAUGGCGGCGGCGGCAUUGGGCAGCUCCUCAGGCUCGGCGUCCCCGGCCGUGGCUGAGCUCUGCCAGAACACCCCGGAGACCUUUUUGGAGGCCUCCAAGCUGCUGCUCACCUAUGCUGACAACAPCCUCAGAAACCCUAAUGAUGAAAAAUAUAGAUCCAPCCGGAUUGGAAACACAGCCUUUUCUACUAGACUCUUGCCUGUCAGAGGAGCUGUUGAAUGUUUAUUUGAAAUGGGCUUUGAAGAGGGAGAAACACAUCUCAUCUUUCCUAAAAAAGCUUCAGUGGAGCAGCUGCAAAAAAUUCGUGACCUGAUUGCCAUAGAGAGAAGUAGCAGACUGGAUGGCUCAAAUAAGAGCCACAAAGUAAAGUCAUCUCAGCAACCUGCAGCCAGUACCCAGCUUCCUACAACACCAUCUUCAAAUCCCAGUGGGUUAAACCAGCACACAAGGAACCGUCAAGGGCAGUCAUCAGAUCCACCAUCUGCUUCAACGGUUGCUGCUGACUCAGCCAUUCUAGAAGUUCUUCAGUCCAACAUUCAGCAUGUGCUGGUCUAUGAAAAUCCUGCUCUUCAGGAGAAAGCGUUGGCUUGUAUUCCGGUCCAAGAACUAAAAAGGAAAUCACAAGAAAAGUUAUCGAGAGCUAGAAAAUUGGAUAAAGGUAUCAAUAUAAGUGAUGAGGAUUUUCUUUUGCUGGAGCUUUUGCACUGGUUUAAGGAAGAAUUUUUUCACUGGGUGAAUAACGUUUUGUGCAGCAAAUGUGGUGGЖCAGACUAGGUCUAGAGAUAGAUCAUUACUGCCCAGUGAUGAUGAGCUGAAGUGGGGUGCAAAGGAAGUGGAAGAUCAUUACUGUGAUGCCUGCCAGUUCAGCAAUCGAUUCCCAAGAUAUAAUAACCCUGAGAAACUUUUGGAAACAAGAUGUGGACGGUGUGGCGAGUGGGCCAAUUGUUUUACACUGUGCUGCCGAGCUGUAGGGUUUGAAGCUCGCUAUGUUUGGGAUUACACAGACCAUGUCUGGACAGAAGUCUAUUCUCCUUCUCAGCAGCGGUGGCUGCACUGUGAUGCAUGUGAAGAUGUCUGUGACAAGCCACUCCUPUAUGAAAUAGGAUGGGGCAAGAAGCUUUCCUAUGUCAUAGCAUUUUCAAAAGAUGAGGUAGUUGAUGUCACUUGGCGAUAUUCCUGCAAACAUGAAGAGGUGAUUGCCAGAAGAACUAAGGUUAAAGAAGCAUUACUUCGAGACACUAUUAAUGGGCUUAAUAAGCAGAGGCAACUGUUUUUGUCAGAAAACAGAAGGAAAGAACUUCUCCAGAGGAUAAUUGUGGAGCUUGUUGAAUUUAUAUCUCCCAAAACCCCUAAACCUGGAGAACUUGGGGGAAGAAUAUCUGGGUCAGUGGCUUGGAGAGUAGCCCGAGGUGAAAUGGGUCUACAGAGAAAAGAAACCUUGUUUAUUCCCUGUGAAAAUGAGAAGAUUUCUAAЖCAGCUCCACCUUUGUUACAAUAUUGUGAAAGAUCGUUAUGUUCGAGUUUCAAAUAACAAUCAAACCAUUUCUGGAUGGGAGAAUGGCGUGUGGAAAAUGGAAUCUAUAUUCAGAAAAGUUGAAACAGACUGGCACAUGGUAUAUUUGGCCCGAAAGGAAGGAUCAUCUUUUGCUUAUAUUUCCUGGAAGUUUGAGUGUGGGUCAGUUGGCCUAAAAGUAGAUAGCAUUUCUAUUAGAACAAGUAGUCAAACUUUUCAGACUGGAACAGUAGAAUGGAAAUUGCGAUCUGAUACAGCACAAGUAGAACUGACAGGCGAUAACAGUCUUCACUCCUAUGCUGAUUUUUCUGGUGCCACUGAAGUUAUUUUGGAAGCAGAAUUAAGCAGAGGAGAUGGUGAUGUCGCUUGGCAACACACCCAGCUGUUUAGACAAAGCUUAAAUGACCAUGAAGAAAAUUGUUUGGAGAUAAUUAUAAAAUUCAGUGACCUUUGAGAACCUGAACAUUAUAGAAAAGCUGGCAAUAAUCAAGGЖCUUACUGAAGUAGUCUGUUGGUUCAGUGCAUGCUUAGUUGGCAGUUACCACCCUGUGCUAGCAUAUUUCUUUUGCUAGCUAUCCAUCAUGUAACCCUCAUGAAAAUUAUCUPUAUACGUGGЖCUAUAAUAAAAUAUUGAAUUAAAACCUUUCUUCCAUAUGUGACUAUAAUUUGGAGUAAAGUCUUGUUGACUCAAUAUGGGAUUUUAAUCUAAAACUGUAAGUAUGGUUUUAAAAGUUAAAUAAUGAUAUUCAUGAUUAAAUGCUAUUCAUGAUUAUGAUAAAAUCUUGGGCUUAUGAUAGUAAUUUGACAUUUUCUGAUCAGCCAUUCAUUUCUUCAGAAGUGGUUAAAUUAGAGUCUCCUAAUAUUUUUAAUUAAUGUGAAAGUACAGUAGCUCAUAAAUUAUAUAAUGCAUGAAAAUUUAUAUGAUUAUAAAUAUUCAGGCAUUUAAGAAAUAAAAUGAAGUAUUUUGCCUUA
Sequence (SHORT NAMES ENCODING)	AGUGUGGGACGCGGAGAGCGAGGGGCGGCGGCGGCGCCCGCUGGCGCUCAAGCAUGGCGGCGGCGGCAUUGGGCAGCUCCUCAGGCUCGGCGUCCCCGGCCGUGGCUGAGCUCUGCCAGAACACCCCGGAGACCUUUUUGGAGGCCUCCAAGCUGCUGCUCACCUAUGCUGACAACAYCCUCAGAAACCCUAAUGAUGAAAAAUAUAGAUCCAYCCGGAUUGGAAACACAGCCUUUUCUACUAGACUCUUGCCUGUCAGAGGAGCUGUUGAAUGUUUAUUUGAAAUGGGCUUUGAAGAGGGAGAAACACAUCUCAUCUUUCCUAAAAAAGCUUCAGUGGAGCAGCUGCAAAAAAUUCGUGACCUGAUUGCCAUAGAGAGAAGUAGCAGACUGGAUGGCUCAAAUAAGAGCCACAAAGUAAAGUCAUCUCAGCAACCUGCAGCCAGUACCCAGCUUCCUACAACACCAUCUUCAAAUCCCAGUGGGUUAAACCAGCACACAAGGAACCGUCAAGGGCAGUCAUCAGAUCCACCAUCUGCUUCAACGGUUGCUGCUGACUCAGCCAUUCUAGAAGUUCUUCAGUCCAACAUUCAGCAUGUGCUGGUCUAUGAAAAUCCUGCUCUUCAGGAGAAAGCGUUGGCUUGUAUUCCGGUCCAAGAACUAAAAAGGAAAUCACAAGAAAAGUUAUCGAGAGCUAGAAAAUUGGAUAAAGGUAUCAAUAUAAGUGAUGAGGAUUUUCUUUUGCUGGAGCUUUUGCACUGGUUUAAGGAAGAAUUUUUUCACUGGGUGAAUAACGUUUUGUGCAGCAAAUGUGGUGGm6ACAGACUAGGUCUAGAGAUAGAUCAUUACUGCCCAGUGAUGAUGAGCUGAAGUGGGGUGCAAAGGAAGUGGAAGAUCAUUACUGUGAUGCCUGCCAGUUCAGCAAUCGAUUCCCAAGAUAUAAUAACCCUGAGAAACUUUUGGAAACAAGAUGUGGACGGUGUGGCGAGUGGGCCAAUUGUUUUACACUGUGCUGCCGAGCUGUAGGGUUUGAAGCUCGCUAUGUUUGGGAUUACACAGACCAUGUCUGGACAGAAGUCUAUUCUCCUUCUCAGCAGCGGUGGCUGCACUGUGAUGCAUGUGAAGAUGUCUGUGACAAGCCACUCCUYUAUGAAAUAGGAUGGGGCAAGAAGCUUUCCUAUGUCAUAGCAUUUUCAAAAGAUGAGGUAGUUGAUGUCACUUGGCGAUAUUCCUGCAAACAUGAAGAGGUGAUUGCCAGAAGAACUAAGGUUAAAGAAGCAUUACUUCGAGACACUAUUAAUGGGCUUAAUAAGCAGAGGCAACUGUUUUUGUCAGAAAACAGAAGGAAAGAACUUCUCCAGAGGAUAAUUGUGGAGCUUGUUGAAUUUAUAUCUCCCAAAACCCCUAAACCUGGAGAACUUGGGGGAAGAAUAUCUGGGUCAGUGGCUUGGAGAGUAGCCCGAGGUGAAAUGGGUCUACAGAGAAAAGAAACCUUGUUUAUUCCCUGUGAAAAUGAGAAGAUUUCUAAm6ACAGCUCCACCUUUGUUACAAUAUUGUGAAAGAUCGUUAUGUUCGAGUUUCAAAUAACAAUCAAACCAUUUCUGGAUGGGAGAAUGGCGUGUGGAAAAUGGAAUCUAUAUUCAGAAAAGUUGAAACAGACUGGCACAUGGUAUAUUUGGCCCGAAAGGAAGGAUCAUCUUUUGCUUAUAUUUCCUGGAAGUUUGAGUGUGGGUCAGUUGGCCUAAAAGUAGAUAGCAUUUCUAUUAGAACAAGUAGUCAAACUUUUCAGACUGGAACAGUAGAAUGGAAAUUGCGAUCUGAUACAGCACAAGUAGAACUGACAGGCGAUAACAGUCUUCACUCCUAUGCUGAUUUUUCUGGUGCCACUGAAGUUAUUUUGGAAGCAGAAUUAAGCAGAGGAGAUGGUGAUGUCGCUUGGCAACACACCCAGCUGUUUAGACAAAGCUUAAAUGACCAUGAAGAAAAUUGUUUGGAGAUAAUUAUAAAAUUCAGUGACCUUUGAGAACCUGAACAUUAUAGAAAAGCUGGCAAUAAUCAAGGm6ACUUACUGAAGUAGUCUGUUGGUUCAGUGCAUGCUUAGUUGGCAGUUACCACCCUGUGCUAGCAUAUUUCUUUUGCUAGCUAUCCAUCAUGUAACCCUCAUGAAAAUUAUCUYUAUACGUGGm6ACUAUAAUAAAAUAUUGAAUUAAAACCUUUCUUCCAUAUGUGACUAUAAUUUGGAGUAAAGUCUUGUUGACUCAAUAUGGGAUUUUAAUCUAAAACUGUAAGUAUGGUUUUAAAAGUUAAAUAAUGAUAUUCAUGAUUAAAUGCUAUUCAUGAUUAUGAUAAAAUCUUGGGCUUAUGAUAGUAAUUUGACAUUUUCUGAUCAGCCAUUCAUUUCUUCAGAAGUGGUUAAAUUAGAGUCUCCUAAUAUUUUUAAUUAAUGUGAAAGUACAGUAGCUCAUAAAUUAUAUAAUGCAUGAAAAUUUAUAUGAUUAUAAAUAUUCAGGCAUUUAAGAAAUAAAAUGAAGUAUUUUGCCUUA
Sequence (MODOMICS CODE ENCODING)	AGUGUGGGACGCGGAGAGCGAGGGGCGGCGGCGGCGCCCGCUGGCGCUCAAGCAUGGCGGCGGCGGCAUUGGGCAGCUCCUCAGGCUCGGCGUCCCCGGCCGUGGCUGAGCUCUGCCAGAACACCCCGGAGACCUUUUUGGAGGCCUCCAAGCUGCUGCUCACCUAUGCUGACAACA2000000009UCCUCAGAAACCCUAAUGAUGAAAAAUAUAGAUCCA2000000009UCCGGAUUGGAAACACAGCCUUUUCUACUAGACUCUUGCCUGUCAGAGGAGCUGUUGAAUGUUUAUUUGAAAUGGGCUUUGAAGAGGGAGAAACACAUCUCAUCUUUCCUAAAAAAGCUUCAGUGGAGCAGCUGCAAAAAAUUCGUGACCUGAUUGCCAUAGAGAGAAGUAGCAGACUGGAUGGCUCAAAUAAGAGCCACAAAGUAAAGUCAUCUCAGCAACCUGCAGCCAGUACCCAGCUUCCUACAACACCAUCUUCAAAUCCCAGUGGGUUAAACCAGCACACAAGGAACCGUCAAGGGCAGUCAUCAGAUCCACCAUCUGCUUCAACGGUUGCUGCUGACUCAGCCAUUCUAGAAGUUCUUCAGUCCAACAUUCAGCAUGUGCUGGUCUAUGAAAAUCCUGCUCUUCAGGAGAAAGCGUUGGCUUGUAUUCCGGUCCAAGAACUAAAAAGGAAAUCACAAGAAAAGUUAUCGAGAGCUAGAAAAUUGGAUAAAGGUAUCAAUAUAAGUGAUGAGGAUUUUCUUUUGCUGGAGCUUUUGCACUGGUUUAAGGAAGAAUUUUUUCACUGGGUGAAUAACGUUUUGUGCAGCAAAUGUGGUGG2000000006ACAGACUAGGUCUAGAGAUAGAUCAUUACUGCCCAGUGAUGAUGAGCUGAAGUGGGGUGCAAAGGAAGUGGAAGAUCAUUACUGUGAUGCCUGCCAGUUCAGCAAUCGAUUCCCAAGAUAUAAUAACCCUGAGAAACUUUUGGAAACAAGAUGUGGACGGUGUGGCGAGUGGGCCAAUUGUUUUACACUGUGCUGCCGAGCUGUAGGGUUUGAAGCUCGCUAUGUUUGGGAUUACACAGACCAUGUCUGGACAGAAGUCUAUUCUCCUUCUCAGCAGCGGUGGCUGCACUGUGAUGCAUGUGAAGAUGUCUGUGACAAGCCACUCCU2000000009UUAUGAAAUAGGAUGGGGCAAGAAGCUUUCCUAUGUCAUAGCAUUUUCAAAAGAUGAGGUAGUUGAUGUCACUUGGCGAUAUUCCUGCAAACAUGAAGAGGUGAUUGCCAGAAGAACUAAGGUUAAAGAAGCAUUACUUCGAGACACUAUUAAUGGGCUUAAUAAGCAGAGGCAACUGUUUUUGUCAGAAAACAGAAGGAAAGAACUUCUCCAGAGGAUAAUUGUGGAGCUUGUUGAAUUUAUAUCUCCCAAAACCCCUAAACCUGGAGAACUUGGGGGAAGAAUAUCUGGGUCAGUGGCUUGGAGAGUAGCCCGAGGUGAAAUGGGUCUACAGAGAAAAGAAACCUUGUUUAUUCCCUGUGAAAAUGAGAAGAUUUCUAA2000000006ACAGCUCCACCUUUGUUACAAUAUUGUGAAAGAUCGUUAUGUUCGAGUUUCAAAUAACAAUCAAACCAUUUCUGGAUGGGAGAAUGGCGUGUGGAAAAUGGAAUCUAUAUUCAGAAAAGUUGAAACAGACUGGCACAUGGUAUAUUUGGCCCGAAAGGAAGGAUCAUCUUUUGCUUAUAUUUCCUGGAAGUUUGAGUGUGGGUCAGUUGGCCUAAAAGUAGAUAGCAUUUCUAUUAGAACAAGUAGUCAAACUUUUCAGACUGGAACAGUAGAAUGGAAAUUGCGAUCUGAUACAGCACAAGUAGAACUGACAGGCGAUAACAGUCUUCACUCCUAUGCUGAUUUUUCUGGUGCCACUGAAGUUAUUUUGGAAGCAGAAUUAAGCAGAGGAGAUGGUGAUGUCGCUUGGCAACACACCCAGCUGUUUAGACAAAGCUUAAAUGACCAUGAAGAAAAUUGUUUGGAGAUAAUUAUAAAAUUCAGUGACCUUUGAGAACCUGAACAUUAUAGAAAAGCUGGCAAUAAUCAAGG2000000006ACUUACUGAAGUAGUCUGUUGGUUCAGUGCAUGCUUAGUUGGCAGUUACCACCCUGUGCUAGCAUAUUUCUUUUGCUAGCUAUCCAUCAUGUAACCCUCAUGAAAAUUAUCU2000000009UUAUACGUGG2000000006ACUAUAAUAAAAUAUUGAAUUAAAACCUUUCUUCCAUAUGUGACUAUAAUUUGGAGUAAAGUCUUGUUGACUCAAUAUGGGAUUUUAAUCUAAAACUGUAAGUAUGGUUUUAAAAGUUAAAUAAUGAUAUUCAUGAUUAAAUGCUAUUCAUGAUUAUGAUAAAAUCUUGGGCUUAUGAUAGUAAUUUGACAUUUUCUGAUCAGCCAUUCAUUUCUUCAGAAGUGGUUAAAUUAGAGUCUCCUAAUAUUUUUAAUUAAUGUGAAAGUACAGUAGCUCAUAAAUUAUAUAAUGCAUGAAAAUUUAUAUGAUUAUAAAUAUUCAGGCAUUUAAGAAAUAAAAUGAAGUAUUUUGCCUUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	178	214	818	1145	1526	2057	2169	2179
Modification Positions	Y	Y	m6A	Y	m6A	m6A	Y	m6A
Genomic Coordinates	3:25783266:-	3:25778659:-	3:25739693:-	3:25736061:-	3:25729271:-	3:25719421:-	3:25719309:-	3:25719299:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL nfCHyrYzE6fB WiQcrNTGZHPT BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	8cMbzB4aD5Se BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8