Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000455168
Gene ID: ENSG00000134108
Gene Name: ARL8B
Sequence (UNICHARACTER ENCODING) ЖUAUGAUCCGCUCGGCUUCCUGGGUCUGGCUGCUGCCGCCCGCCGGUGUCCGCCCGUGUCGCGCCGGGGCACCAAGGAGCCGUUGGAGGGUCCGGGCGGAGGCCCGCUCGUGUGGAAGUCGUCGACGCCGCCGCUCGUCCGUCCUCCCGUCCGUUCUCGCUCCCGGCCGCCAUCAUGCUGGCGCUCAUCUCCCGCCUGCUGGACUGGUUCCGUUCGCUCUUCUGGAAGGAAGAGAUGGAGCUGACGCUCGUGGGGCUGCAGUACUCGGGCAAGACCACCUUCGUCAAUGUCAUCGCGUCAGGUCAAUUCAGUGAAGAUAUGAUACCCACAGUGGGCUUCAACAUGAGGAAGAUCUGGGACAUAGGAGGACAACCCCGAUUUCGAAGCAUGUGGGAGCGGUAUUGCAGAGGAGUCAAUGCUAUUGUUUACЖUGAUAGAUGCUGCAGAUCGUGAAAAGAUAGAAGCUUCCCGAAAUGAGCUACAUAAUCUUCUAGAUAAACCACAGUUACAAGGAAUUCCAGUGCUAGUGCUUGGAAACAAGAGAGAUCUUCCUAAUGCCUUGGAUGAGAAACAGCUAAUUGAAAAAAUGAAUCUGUCUGCUAUUCAGGAUAGAGAAAUUUGCUGCUAUUCAAUUUCUUGCAAAGAAAAGGAUAAUAUAGAUAUCACACUUCAGUGGCUUAUUCAGCAUUCAAAAUCUAGAAGAAGCUGAAGCAUCUCCUGAAGUCUUCCAGUCCUUCUUGGCUAUAAUCCUAGAAUUAUUGUCCGUUCCUCUGAAGUAAUUCCCAGAAUACGGUCCUUCCUAAACCCCAGAAAUUGCCUUUUUCAGAGUUUAUUUCUCAUGUGCACUGCUGAAGAUGAAUAUCCCUAAUCCUUCAUAAAGAAUCAGCUAGAGUUGUCAUGAUAAAGUCAGCACACACAAAAAGGCUUCUUACACAUACCUGUCUUAAЖCCAUGUGUAGAGCUPUAAAAACAGAAAAAAAACCCCAUAUACUUAUGACCAUCUUAAAUCAAGAAAAUUGCAUAUUUCCAUUCUGGUCUUUCUGGGCCAGAUUUUUAUAUUGGUUUUCAGUAAAUGUCUAUCUAUAAUAUUUCAUUAUAGAGUCCAGUAGCUUAAUACUGACACUGACUUGAUACЖGCAUGAAGUUUCUAGUGCCACACACAGUAUUUAGAAAACCUPUAGGCGUGAAUGACUCAUGUGGGAUAUAUGUAAЖCAUAAUGUUUAUUUUAUCUCACAAAUGCAUGUGAAAUGUAUAAUUACAUCUUAGGAAUCCAAAAUGGUCUGCAGAGAGUGAGCGGAGGCACCAGAUCAAUGUUGGUUCUUUGCACUGGUGAGAUUCUGCCUGAUGAAUAUUAAAGAUAUCCUGCUUUCUGAGAACUCUAUCACCAGAUGGCAGUUGGGAUAUGGGAGGAACUAAAGCAPCCUGUUUUGUAUCUGUCCAGAUCAUUAUUUCUGUCUCUUGUUUUUUCUUCCUGGUUCAGGAUACUUUUUUAAGGGGUUGAGAAUUGAAGAUUUUCCAAAAGCGUUCAUGAAUUUAGAGCAUUCCACCCAAUAUAAUAAAACCUGUUAAGAAUGUCAGUCUUUGUUCAAЖCAUCUGUUUGUUCUAUCUCCAGUCAUUAAAUCAGUGCUGCUGCAUGACACUCUU
Sequence (SHORT NAMES ENCODING) m6AUAUGAUCCGCUCGGCUUCCUGGGUCUGGCUGCUGCCGCCCGCCGGUGUCCGCCCGUGUCGCGCCGGGGCACCAAGGAGCCGUUGGAGGGUCCGGGCGGAGGCCCGCUCGUGUGGAAGUCGUCGACGCCGCCGCUCGUCCGUCCUCCCGUCCGUUCUCGCUCCCGGCCGCCAUCAUGCUGGCGCUCAUCUCCCGCCUGCUGGACUGGUUCCGUUCGCUCUUCUGGAAGGAAGAGAUGGAGCUGACGCUCGUGGGGCUGCAGUACUCGGGCAAGACCACCUUCGUCAAUGUCAUCGCGUCAGGUCAAUUCAGUGAAGAUAUGAUACCCACAGUGGGCUUCAACAUGAGGAAGAUCUGGGACAUAGGAGGACAACCCCGAUUUCGAAGCAUGUGGGAGCGGUAUUGCAGAGGAGUCAAUGCUAUUGUUUACm6AUGAUAGAUGCUGCAGAUCGUGAAAAGAUAGAAGCUUCCCGAAAUGAGCUACAUAAUCUUCUAGAUAAACCACAGUUACAAGGAAUUCCAGUGCUAGUGCUUGGAAACAAGAGAGAUCUUCCUAAUGCCUUGGAUGAGAAACAGCUAAUUGAAAAAAUGAAUCUGUCUGCUAUUCAGGAUAGAGAAAUUUGCUGCUAUUCAAUUUCUUGCAAAGAAAAGGAUAAUAUAGAUAUCACACUUCAGUGGCUUAUUCAGCAUUCAAAAUCUAGAAGAAGCUGAAGCAUCUCCUGAAGUCUUCCAGUCCUUCUUGGCUAUAAUCCUAGAAUUAUUGUCCGUUCCUCUGAAGUAAUUCCCAGAAUACGGUCCUUCCUAAACCCCAGAAAUUGCCUUUUUCAGAGUUUAUUUCUCAUGUGCACUGCUGAAGAUGAAUAUCCCUAAUCCUUCAUAAAGAAUCAGCUAGAGUUGUCAUGAUAAAGUCAGCACACACAAAAAGGCUUCUUACACAUACCUGUCUUAAm6ACCAUGUGUAGAGCUYUAAAAACAGAAAAAAAACCCCAUAUACUUAUGACCAUCUUAAAUCAAGAAAAUUGCAUAUUUCCAUUCUGGUCUUUCUGGGCCAGAUUUUUAUAUUGGUUUUCAGUAAAUGUCUAUCUAUAAUAUUUCAUUAUAGAGUCCAGUAGCUUAAUACUGACACUGACUUGAUACm6AGCAUGAAGUUUCUAGUGCCACACACAGUAUUUAGAAAACCUYUAGGCGUGAAUGACUCAUGUGGGAUAUAUGUAAm6ACAUAAUGUUUAUUUUAUCUCACAAAUGCAUGUGAAAUGUAUAAUUACAUCUUAGGAAUCCAAAAUGGUCUGCAGAGAGUGAGCGGAGGCACCAGAUCAAUGUUGGUUCUUUGCACUGGUGAGAUUCUGCCUGAUGAAUAUUAAAGAUAUCCUGCUUUCUGAGAACUCUAUCACCAGAUGGCAGUUGGGAUAUGGGAGGAACUAAAGCAYCCUGUUUUGUAUCUGUCCAGAUCAUUAUUUCUGUCUCUUGUUUUUUCUUCCUGGUUCAGGAUACUUUUUUAAGGGGUUGAGAAUUGAAGAUUUUCCAAAAGCGUUCAUGAAUUUAGAGCAUUCCACCCAAUAUAAUAAAACCUGUUAAGAAUGUCAGUCUUUGUUCAAm6ACAUCUGUUUGUUCUAUCUCCAGUCAUUAAAUCAGUGCUGCUGCAUGACACUCUU
Sequence (MODOMICS CODE ENCODING) 2000000006AUAUGAUCCGCUCGGCUUCCUGGGUCUGGCUGCUGCCGCCCGCCGGUGUCCGCCCGUGUCGCGCCGGGGCACCAAGGAGCCGUUGGAGGGUCCGGGCGGAGGCCCGCUCGUGUGGAAGUCGUCGACGCCGCCGCUCGUCCGUCCUCCCGUCCGUUCUCGCUCCCGGCCGCCAUCAUGCUGGCGCUCAUCUCCCGCCUGCUGGACUGGUUCCGUUCGCUCUUCUGGAAGGAAGAGAUGGAGCUGACGCUCGUGGGGCUGCAGUACUCGGGCAAGACCACCUUCGUCAAUGUCAUCGCGUCAGGUCAAUUCAGUGAAGAUAUGAUACCCACAGUGGGCUUCAACAUGAGGAAGAUCUGGGACAUAGGAGGACAACCCCGAUUUCGAAGCAUGUGGGAGCGGUAUUGCAGAGGAGUCAAUGCUAUUGUUUAC2000000006AUGAUAGAUGCUGCAGAUCGUGAAAAGAUAGAAGCUUCCCGAAAUGAGCUACAUAAUCUUCUAGAUAAACCACAGUUACAAGGAAUUCCAGUGCUAGUGCUUGGAAACAAGAGAGAUCUUCCUAAUGCCUUGGAUGAGAAACAGCUAAUUGAAAAAAUGAAUCUGUCUGCUAUUCAGGAUAGAGAAAUUUGCUGCUAUUCAAUUUCUUGCAAAGAAAAGGAUAAUAUAGAUAUCACACUUCAGUGGCUUAUUCAGCAUUCAAAAUCUAGAAGAAGCUGAAGCAUCUCCUGAAGUCUUCCAGUCCUUCUUGGCUAUAAUCCUAGAAUUAUUGUCCGUUCCUCUGAAGUAAUUCCCAGAAUACGGUCCUUCCUAAACCCCAGAAAUUGCCUUUUUCAGAGUUUAUUUCUCAUGUGCACUGCUGAAGAUGAAUAUCCCUAAUCCUUCAUAAAGAAUCAGCUAGAGUUGUCAUGAUAAAGUCAGCACACACAAAAAGGCUUCUUACACAUACCUGUCUUAA2000000006ACCAUGUGUAGAGCU2000000009UUAAAAACAGAAAAAAAACCCCAUAUACUUAUGACCAUCUUAAAUCAAGAAAAUUGCAUAUUUCCAUUCUGGUCUUUCUGGGCCAGAUUUUUAUAUUGGUUUUCAGUAAAUGUCUAUCUAUAAUAUUUCAUUAUAGAGUCCAGUAGCUUAAUACUGACACUGACUUGAUAC2000000006AGCAUGAAGUUUCUAGUGCCACACACAGUAUUUAGAAAACCU2000000009UUAGGCGUGAAUGACUCAUGUGGGAUAUAUGUAA2000000006ACAUAAUGUUUAUUUUAUCUCACAAAUGCAUGUGAAAUGUAUAAUUACAUCUUAGGAAUCCAAAAUGGUCUGCAGAGAGUGAGCGGAGGCACCAGAUCAAUGUUGGUUCUUUGCACUGGUGAGAUUCUGCCUGAUGAAUAUUAAAGAUAUCCUGCUUUCUGAGAACUCUAUCACCAGAUGGCAGUUGGGAUAUGGGAGGAACUAAAGCA2000000009UCCUGUUUUGUAUCUGUCCAGAUCAUUAUUUCUGUCUCUUGUUUUUUCUUCCUGGUUCAGGAUACUUUUUUAAGGGGUUGAGAAUUGAAGAUUUUCCAAAAGCGUUCAUGAAUUUAGAGCAUUCCACCCAAUAUAAUAAAACCUGUUAAGAAUGUCAGUCUUUGUUCAA2000000006ACAUCUGUUUGUUCUAUCUCCAGUCAUUAAAUCAGUGCUGCUGCAUGACACUCUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1 430 947 962 1133 1175 1209 1418 1587
Modification Positions m6A m6A m6A Y m6A Y m6A Y m6A
Genomic Coordinates 3:5122292:+ 3:5172651:+ 3:5178952:+ 3:5178967:+ 3:5179138:+ 3:5179180:+ 3:5179214:+ 3:5179423:+ 3:5179592:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8