Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000437827
Gene ID: ENSG00000163788
Gene Name: SNRK
Sequence (UNICHARACTER ENCODING) AUGAUUAGCGCUGGGUGCGGGGUUUCGGCGGCCGGGAGGGAGUUGUCGGCGCCGCGGCCGCUGCGGACGGACGCUCGCCUGCCGGCUGAGAUAUUUGGAGUCUGGGAGUGAUCCUUUUCAUGUUGGUGUGUGGGCAGCCGCCCUUUCAAGAAGCCAAUGACAGUGAAACACUGACAAUGAUCAUGGAUUGCAAAUAUACAGUACCAUCCCAUGUGUCUAAAGAGUGUAAAGACCUAAUCACACGGAUGCUACAGAGAGAUCCCAAGAGAAGGGCUUCUUUAGAAGAGAUUGAAAAUCAUCCUUGGCUUCAGGGAGUGGACCCUUCACCAGCUACAAAGUAUAACAUUCCCCUUGUGUCAUACAAAAAUCUCUCGGAAGAGGAGCACAACAGCAUCAUUCAGCGCAUGGUGCUUGGGGACAUAGCGGAUCGAGACGCCAUUGUAGAAGCCCUGGAAACCAACAGGUAUAACCAUAUCACAGCCACAUACUUCCUGCUGGCUGAAAGGAUCCUGAGAGAAAAGCAAGAGAAAGAAAUACAGACCAGAUCUGCAAGCCCGAGCAAUAUCAAGGCCCAGUUUAGGCAGUCAUGGCCAACCAAAAUUGAUGUACCCCAGGACCUUGAGGAUGЖCCUCACGGCCACUCCUUUGUCCCACGCGACUGUCCCUCAGUCUCCUGCUCGGGCUGCUGACAGUGUCCUCAAUGGCCACAGGAGCAAAGGCCUGUGUGЖCUCAGCUAAGAAAGAUGACCUCCCUGAGUUGGCUGGACCAGCACUCUCUACGGUGCCACCCGCAAGCUUAAAACCCACAGCCAGUGGGCGGAAGUGUCUGUUCAGGGUGGAAGAAGAUGAAGAGGAAGAUGAGGAGGACAAGAAACCCAUGUCCCUCUCAACACAAGUGGUUUUGCGCCGGAAGCCAUCUGUAACCAACCGCCUGACAUCCAGGAAGAGUGCGCCCGUCCUCAACCAGAUCUUUGAGGAAGGGGAAUCUGACGAUGAGUUUGACAUGGAUGAGAAUCUGCCUCCCAAGUUGAGCAGGUUAAAGAUGAAUAUAGCUUCUCCAGGUACAGUUCACAAACGCUACCACCGGAGGAAAAGUCAGGGCCGGGGCUCCAGCUGCAGUAGUUCGGAGACCAGUGAUGAUGAUUCUGAAAGCCGGCGGCGGCUCGAUAAAGAUAGCGGGUUCACCUACUCCUGGCACCGACGGGAUAGCAGCGAGGGGCCCCCUGGCAGUGAGGGGGAUGGCGGGGGCCAGAGCAAGCCAAGCAAUGCCAGUGGAGGGGUGGЖCAAGGCCAGCCCCAGUGAGAЖCAAUGCUGGUGGGGGCAGUCCCUCCAGCGGCUCGGGUGGCAACCCCACCAAUACAUCGGGUACCACACGCCGCUGUGCCGGCCCCAGCAACUCCAUGCAGCUGGCCUCUCGCAGUGCUGGGGAGCUCGUUGAGAGCCUCAAЖCUCAUGAGCCUCUGCCUCGGCUCCCAGCUUCAUGGGAGCACCAAGUЖCAUUAUUGAUCCACAGAAUGGCUUGUCAUUUUCCAGUGUGAAAGUCCAAGAGAAAUCUACGUGGAAAAUGUGCAUUAGCUCCACAGGGAAUGCAGGGCAGGUCCCUGCAGUGGGCGGCAUAAAGUUUUUCUCUGACCACAUGGCAGAUACCACCACUGAAUUGGAACGGAUAAAGAGCAAGAACCUGAAAAAUAACGUGCUGCAGCUACCUCUGUGCGAAAAGЖCCAUCUCUGUGAACAUCCAGCGGAACCCUAAGGAGGGGCUGCUGUGCGCAUCCAGCCCAGCCAGCUGUUGCCAUGUCAUCUGЖCUGUGGCCCCAUCUGGCCGCUAGCACGCUUCCUGCUCAGAGCAGUGAAGACCGGCUCACUUCACUGUUCCAUUUGGUUUUACUAUUUUAAAGUGGGCGUUAGGAGCAAUUAUUUAUUACCUUUCCAUUUGUUCGCCUGAUGAUGUGACAAUGCAUGGUCUUUGUGCAUGCUGCUAGЖCACUUUUCUUUCCCAGCCG
Sequence (SHORT NAMES ENCODING) AUGAUUAGCGCUGGGUGCGGGGUUUCGGCGGCCGGGAGGGAGUUGUCGGCGCCGCGGCCGCUGCGGACGGACGCUCGCCUGCCGGCUGAGAUAUUUGGAGUCUGGGAGUGAUCCUUUUCAUGUUGGUGUGUGGGCAGCCGCCCUUUCAAGAAGCCAAUGACAGUGAAACACUGACAAUGAUCAUGGAUUGCAAAUAUACAGUACCAUCCCAUGUGUCUAAAGAGUGUAAAGACCUAAUCACACGGAUGCUACAGAGAGAUCCCAAGAGAAGGGCUUCUUUAGAAGAGAUUGAAAAUCAUCCUUGGCUUCAGGGAGUGGACCCUUCACCAGCUACAAAGUAUAACAUUCCCCUUGUGUCAUACAAAAAUCUCUCGGAAGAGGAGCACAACAGCAUCAUUCAGCGCAUGGUGCUUGGGGACAUAGCGGAUCGAGACGCCAUUGUAGAAGCCCUGGAAACCAACAGGUAUAACCAUAUCACAGCCACAUACUUCCUGCUGGCUGAAAGGAUCCUGAGAGAAAAGCAAGAGAAAGAAAUACAGACCAGAUCUGCAAGCCCGAGCAAUAUCAAGGCCCAGUUUAGGCAGUCAUGGCCAACCAAAAUUGAUGUACCCCAGGACCUUGAGGAUGm6ACCUCACGGCCACUCCUUUGUCCCACGCGACUGUCCCUCAGUCUCCUGCUCGGGCUGCUGACAGUGUCCUCAAUGGCCACAGGAGCAAAGGCCUGUGUGm6ACUCAGCUAAGAAAGAUGACCUCCCUGAGUUGGCUGGACCAGCACUCUCUACGGUGCCACCCGCAAGCUUAAAACCCACAGCCAGUGGGCGGAAGUGUCUGUUCAGGGUGGAAGAAGAUGAAGAGGAAGAUGAGGAGGACAAGAAACCCAUGUCCCUCUCAACACAAGUGGUUUUGCGCCGGAAGCCAUCUGUAACCAACCGCCUGACAUCCAGGAAGAGUGCGCCCGUCCUCAACCAGAUCUUUGAGGAAGGGGAAUCUGACGAUGAGUUUGACAUGGAUGAGAAUCUGCCUCCCAAGUUGAGCAGGUUAAAGAUGAAUAUAGCUUCUCCAGGUACAGUUCACAAACGCUACCACCGGAGGAAAAGUCAGGGCCGGGGCUCCAGCUGCAGUAGUUCGGAGACCAGUGAUGAUGAUUCUGAAAGCCGGCGGCGGCUCGAUAAAGAUAGCGGGUUCACCUACUCCUGGCACCGACGGGAUAGCAGCGAGGGGCCCCCUGGCAGUGAGGGGGAUGGCGGGGGCCAGAGCAAGCCAAGCAAUGCCAGUGGAGGGGUGGm6ACAAGGCCAGCCCCAGUGAGAm6ACAAUGCUGGUGGGGGCAGUCCCUCCAGCGGCUCGGGUGGCAACCCCACCAAUACAUCGGGUACCACACGCCGCUGUGCCGGCCCCAGCAACUCCAUGCAGCUGGCCUCUCGCAGUGCUGGGGAGCUCGUUGAGAGCCUCAAm6ACUCAUGAGCCUCUGCCUCGGCUCCCAGCUUCAUGGGAGCACCAAGUm6ACAUUAUUGAUCCACAGAAUGGCUUGUCAUUUUCCAGUGUGAAAGUCCAAGAGAAAUCUACGUGGAAAAUGUGCAUUAGCUCCACAGGGAAUGCAGGGCAGGUCCCUGCAGUGGGCGGCAUAAAGUUUUUCUCUGACCACAUGGCAGAUACCACCACUGAAUUGGAACGGAUAAAGAGCAAGAACCUGAAAAAUAACGUGCUGCAGCUACCUCUGUGCGAAAAGm6ACCAUCUCUGUGAACAUCCAGCGGAACCCUAAGGAGGGGCUGCUGUGCGCAUCCAGCCCAGCCAGCUGUUGCCAUGUCAUCUGm6ACUGUGGCCCCAUCUGGCCGCUAGCACGCUUCCUGCUCAGAGCAGUGAAGACCGGCUCACUUCACUGUUCCAUUUGGUUUUACUAUUUUAAAGUGGGCGUUAGGAGCAAUUAUUUAUUACCUUUCCAUUUGUUCGCCUGAUGAUGUGACAAUGCAUGGUCUUUGUGCAUGCUGCUAGm6ACACUUUUCUUUCCCAGCCG
Sequence (MODOMICS CODE ENCODING) AUGAUUAGCGCUGGGUGCGGGGUUUCGGCGGCCGGGAGGGAGUUGUCGGCGCCGCGGCCGCUGCGGACGGACGCUCGCCUGCCGGCUGAGAUAUUUGGAGUCUGGGAGUGAUCCUUUUCAUGUUGGUGUGUGGGCAGCCGCCCUUUCAAGAAGCCAAUGACAGUGAAACACUGACAAUGAUCAUGGAUUGCAAAUAUACAGUACCAUCCCAUGUGUCUAAAGAGUGUAAAGACCUAAUCACACGGAUGCUACAGAGAGAUCCCAAGAGAAGGGCUUCUUUAGAAGAGAUUGAAAAUCAUCCUUGGCUUCAGGGAGUGGACCCUUCACCAGCUACAAAGUAUAACAUUCCCCUUGUGUCAUACAAAAAUCUCUCGGAAGAGGAGCACAACAGCAUCAUUCAGCGCAUGGUGCUUGGGGACAUAGCGGAUCGAGACGCCAUUGUAGAAGCCCUGGAAACCAACAGGUAUAACCAUAUCACAGCCACAUACUUCCUGCUGGCUGAAAGGAUCCUGAGAGAAAAGCAAGAGAAAGAAAUACAGACCAGAUCUGCAAGCCCGAGCAAUAUCAAGGCCCAGUUUAGGCAGUCAUGGCCAACCAAAAUUGAUGUACCCCAGGACCUUGAGGAUG2000000006ACCUCACGGCCACUCCUUUGUCCCACGCGACUGUCCCUCAGUCUCCUGCUCGGGCUGCUGACAGUGUCCUCAAUGGCCACAGGAGCAAAGGCCUGUGUG2000000006ACUCAGCUAAGAAAGAUGACCUCCCUGAGUUGGCUGGACCAGCACUCUCUACGGUGCCACCCGCAAGCUUAAAACCCACAGCCAGUGGGCGGAAGUGUCUGUUCAGGGUGGAAGAAGAUGAAGAGGAAGAUGAGGAGGACAAGAAACCCAUGUCCCUCUCAACACAAGUGGUUUUGCGCCGGAAGCCAUCUGUAACCAACCGCCUGACAUCCAGGAAGAGUGCGCCCGUCCUCAACCAGAUCUUUGAGGAAGGGGAAUCUGACGAUGAGUUUGACAUGGAUGAGAAUCUGCCUCCCAAGUUGAGCAGGUUAAAGAUGAAUAUAGCUUCUCCAGGUACAGUUCACAAACGCUACCACCGGAGGAAAAGUCAGGGCCGGGGCUCCAGCUGCAGUAGUUCGGAGACCAGUGAUGAUGAUUCUGAAAGCCGGCGGCGGCUCGAUAAAGAUAGCGGGUUCACCUACUCCUGGCACCGACGGGAUAGCAGCGAGGGGCCCCCUGGCAGUGAGGGGGAUGGCGGGGGCCAGAGCAAGCCAAGCAAUGCCAGUGGAGGGGUGG2000000006ACAAGGCCAGCCCCAGUGAGA2000000006ACAAUGCUGGUGGGGGCAGUCCCUCCAGCGGCUCGGGUGGCAACCCCACCAAUACAUCGGGUACCACACGCCGCUGUGCCGGCCCCAGCAACUCCAUGCAGCUGGCCUCUCGCAGUGCUGGGGAGCUCGUUGAGAGCCUCAA2000000006ACUCAUGAGCCUCUGCCUCGGCUCCCAGCUUCAUGGGAGCACCAAGU2000000006ACAUUAUUGAUCCACAGAAUGGCUUGUCAUUUUCCAGUGUGAAAGUCCAAGAGAAAUCUACGUGGAAAAUGUGCAUUAGCUCCACAGGGAAUGCAGGGCAGGUCCCUGCAGUGGGCGGCAUAAAGUUUUUCUCUGACCACAUGGCAGAUACCACCACUGAAUUGGAACGGAUAAAGAGCAAGAACCUGAAAAAUAACGUGCUGCAGCUACCUCUGUGCGAAAAG2000000006ACCAUCUCUGUGAACAUCCAGCGGAACCCUAAGGAGGGGCUGCUGUGCGCAUCCAGCCCAGCCAGCUGUUGCCAUGUCAUCUG2000000006ACUGUGGCCCCAUCUGGCCGCUAGCACGCUUCCUGCUCAGAGCAGUGAAGACCGGCUCACUUCACUGUUCCAUUUGGUUUUACUAUUUUAAAGUGGGCGUUAGGAGCAAUUAUUUAUUACCUUUCCAUUUGUUCGCCUGAUGAUGUGACAAUGCAUGGUCUUUGUGCAUGCUGCUAG2000000006ACACUUUUCUUUCCCAGCCG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 628 727 1282 1303 1445 1492 1716 1799 1976
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 3:43347386:+ 3:43347485:+ 3:43348040:+ 3:43348061:+ 3:43348203:+ 3:43348250:+ 3:43348474:+ 3:43348557:+ 3:43348734:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 8cMbzB4aD5Se
ArijeGVTwYBw
BkoLW2CBToyL
KTLz8piFYdwC
3TeAZFYFxgvp
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
aHkqKEJkRYyb
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
6AyXsheySjfx
gZuvgwMuBfgh
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
msuJfBpJvM5H
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G