Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000672858
Gene ID: ENSG00000211456
Gene Name: SACM1L
Sequence (UNICHARACTER ENCODING) AUGGCGACGGCGGCCUACGAGCAGCUGAAGCUGCAUAUCACACCUGAAAAAUUUUAUGUGGAAGCUUGUGAUGAUGGAGCAGAUGACGUACUUACCAUUGACCGUGUGUCCACAGAGGUUACCCUUGCAGUCAAGAAAGAUGUUCCUCCUUCAGCUGUCACAAGACCAAUAUUUGGUAUACUGGGCACAAUCCAUCUGGUGGCAGGUAAUUAUCUUAUAGUCAUUACCAAAAAGAUAAAAGUAGGUGAAUUUUUCAGUCAUGUAGUCUGGAAAGCAACAGAUUUUGAUGUCCUUUCUUAUAAGAAGACAAUGUUGCACUUAACUGAUAUUCAGUUACAAGAUAAUAAAACCUUCCUAGCGAUGCUAAACCAUGUCUUGAAUGUGGAUGGAUUUUACUUUUCAACAACAUAUGAUUUGACCCAUACUUUGCAGCGGCUAUCCAACACUAGUCCUGAAUUCCAAGAAAUGAGUCUCUUGGAAAGGGCAGAUCAGCGGUUUGUAUGGAAUGGUCAUCUUCUAAGAGAACUUUCUGCACAGCCAGAGGUUCAUCGGUUUGCCCUUCCAGUGUUACAUGGCUUUAUUACCAUGCAUUCAUGUUCUAUUAAUGGAAAAUACUUUGAUUGGAUUCUCAUCUCGAGGAGGAGCUGUUUCAGAGCUGGUGUGCGCUAUUAUGUAAGAGGAAUUGAUUCGGAAGGCCAUGCAGCUAACUUUGUAGAAACAGAACAAAUUGUGCACUACAAUGGGAGCAAAGCUUCGUUUGUACAGACUCGAGGAUCAAUACCUGUUUUCUGGUCCCAAAGACCAAACCUCAAGUACAAACCACUGCCACAGAUCAGCAAAGUAGCAAAUCACAUGGACGGUUUCCAAAGGCAUUUUGAUUCCCAAGUAAUUAUUUAUGGAAAACAAGUUAUAAUCAAUCUGAUUAACCAGAAGGGCUCGGAGAAGCCACUUGAGCAGACAUUUGCAACAAUGGUGUCUUCCUUGGGAAGUGGAAUGAUGAGAUACAUUGCCUUUGACUUCCAUAAGGAAUGUAAAAAUAUGAGAUGGGAUCGACUAAGUAUUUUAUUGGAUCAGGUAGCAGAAAUGCAAGAUGAAUUAAGUUAUUUUCUAGUGGACUCUGCUGGCCAGGUGGUGGCAAACCAGGAAGGCGUGUUCCGAAGCAAUUGCAUGGAUUGUCUAGAUAGAACCAAUGUGAUCCAGAGUUUGUUAGCUCGUCGUUCACUUCAGGCCCAACUUCAGAGACUAGGAGUUUUGCAUGUGGGACAAAAGCUUGAAGAACAAGAUGAAUUUGAGAAGAUUUACAAAAAUGCCUGGGCUGACAACGCAAAUGCUUGUGCCAAGCAAUAUGCGGGAACUGGUGCCUUGAAGACUGACUPUACCAGAACUGGAAAGAGAACUCAUUUGGGACUUAUAAUGGAUGGCUGGAACUCAAUGAUACGAUAUUAUAAGAACAACUUUUCCGAUGGAUUUAGACAAGAUUCCAUAGACUUAUUUCUUGGAAACUAUUCAGUGGAUGAAUUAGAAUCUCAUAGUCCUPUAAGUGUUCCAAGGGACUGGAAAUUCCUGGCUUUGCCUAUUAUCAUGGUUGUUGCCUUUUCAAUGUGCAUUAUCUGUUUGCUUAUGGCUGGUGACACUUGGACAGAAACACUGGCCUAUGUGCUCUUCUGGGGAGUUGCAAGCAUUGGAACAUUUUUUAUCAUUCUPUACAAUGGCAAAGAUUUUGUCGAUGCUCCCAGACUGGUCCAGAAAGAAAAGAUAGЖCUGAAUUUGUAUUUGUGGAAAGCGGCUUGGCUUGGAAGAUUCCAUUGUGCAGAACUGGAGUCUPUACUGA
Sequence (SHORT NAMES ENCODING) AUGGCGACGGCGGCCUACGAGCAGCUGAAGCUGCAUAUCACACCUGAAAAAUUUUAUGUGGAAGCUUGUGAUGAUGGAGCAGAUGACGUACUUACCAUUGACCGUGUGUCCACAGAGGUUACCCUUGCAGUCAAGAAAGAUGUUCCUCCUUCAGCUGUCACAAGACCAAUAUUUGGUAUACUGGGCACAAUCCAUCUGGUGGCAGGUAAUUAUCUUAUAGUCAUUACCAAAAAGAUAAAAGUAGGUGAAUUUUUCAGUCAUGUAGUCUGGAAAGCAACAGAUUUUGAUGUCCUUUCUUAUAAGAAGACAAUGUUGCACUUAACUGAUAUUCAGUUACAAGAUAAUAAAACCUUCCUAGCGAUGCUAAACCAUGUCUUGAAUGUGGAUGGAUUUUACUUUUCAACAACAUAUGAUUUGACCCAUACUUUGCAGCGGCUAUCCAACACUAGUCCUGAAUUCCAAGAAAUGAGUCUCUUGGAAAGGGCAGAUCAGCGGUUUGUAUGGAAUGGUCAUCUUCUAAGAGAACUUUCUGCACAGCCAGAGGUUCAUCGGUUUGCCCUUCCAGUGUUACAUGGCUUUAUUACCAUGCAUUCAUGUUCUAUUAAUGGAAAAUACUUUGAUUGGAUUCUCAUCUCGAGGAGGAGCUGUUUCAGAGCUGGUGUGCGCUAUUAUGUAAGAGGAAUUGAUUCGGAAGGCCAUGCAGCUAACUUUGUAGAAACAGAACAAAUUGUGCACUACAAUGGGAGCAAAGCUUCGUUUGUACAGACUCGAGGAUCAAUACCUGUUUUCUGGUCCCAAAGACCAAACCUCAAGUACAAACCACUGCCACAGAUCAGCAAAGUAGCAAAUCACAUGGACGGUUUCCAAAGGCAUUUUGAUUCCCAAGUAAUUAUUUAUGGAAAACAAGUUAUAAUCAAUCUGAUUAACCAGAAGGGCUCGGAGAAGCCACUUGAGCAGACAUUUGCAACAAUGGUGUCUUCCUUGGGAAGUGGAAUGAUGAGAUACAUUGCCUUUGACUUCCAUAAGGAAUGUAAAAAUAUGAGAUGGGAUCGACUAAGUAUUUUAUUGGAUCAGGUAGCAGAAAUGCAAGAUGAAUUAAGUUAUUUUCUAGUGGACUCUGCUGGCCAGGUGGUGGCAAACCAGGAAGGCGUGUUCCGAAGCAAUUGCAUGGAUUGUCUAGAUAGAACCAAUGUGAUCCAGAGUUUGUUAGCUCGUCGUUCACUUCAGGCCCAACUUCAGAGACUAGGAGUUUUGCAUGUGGGACAAAAGCUUGAAGAACAAGAUGAAUUUGAGAAGAUUUACAAAAAUGCCUGGGCUGACAACGCAAAUGCUUGUGCCAAGCAAUAUGCGGGAACUGGUGCCUUGAAGACUGACUYUACCAGAACUGGAAAGAGAACUCAUUUGGGACUUAUAAUGGAUGGCUGGAACUCAAUGAUACGAUAUUAUAAGAACAACUUUUCCGAUGGAUUUAGACAAGAUUCCAUAGACUUAUUUCUUGGAAACUAUUCAGUGGAUGAAUUAGAAUCUCAUAGUCCUYUAAGUGUUCCAAGGGACUGGAAAUUCCUGGCUUUGCCUAUUAUCAUGGUUGUUGCCUUUUCAAUGUGCAUUAUCUGUUUGCUUAUGGCUGGUGACACUUGGACAGAAACACUGGCCUAUGUGCUCUUCUGGGGAGUUGCAAGCAUUGGAACAUUUUUUAUCAUUCUYUACAAUGGCAAAGAUUUUGUCGAUGCUCCCAGACUGGUCCAGAAAGAAAAGAUAGm6ACUGAAUUUGUAUUUGUGGAAAGCGGCUUGGCUUGGAAGAUUCCAUUGUGCAGAACUGGAGUCUYUACUGA
Sequence (MODOMICS CODE ENCODING) AUGGCGACGGCGGCCUACGAGCAGCUGAAGCUGCAUAUCACACCUGAAAAAUUUUAUGUGGAAGCUUGUGAUGAUGGAGCAGAUGACGUACUUACCAUUGACCGUGUGUCCACAGAGGUUACCCUUGCAGUCAAGAAAGAUGUUCCUCCUUCAGCUGUCACAAGACCAAUAUUUGGUAUACUGGGCACAAUCCAUCUGGUGGCAGGUAAUUAUCUUAUAGUCAUUACCAAAAAGAUAAAAGUAGGUGAAUUUUUCAGUCAUGUAGUCUGGAAAGCAACAGAUUUUGAUGUCCUUUCUUAUAAGAAGACAAUGUUGCACUUAACUGAUAUUCAGUUACAAGAUAAUAAAACCUUCCUAGCGAUGCUAAACCAUGUCUUGAAUGUGGAUGGAUUUUACUUUUCAACAACAUAUGAUUUGACCCAUACUUUGCAGCGGCUAUCCAACACUAGUCCUGAAUUCCAAGAAAUGAGUCUCUUGGAAAGGGCAGAUCAGCGGUUUGUAUGGAAUGGUCAUCUUCUAAGAGAACUUUCUGCACAGCCAGAGGUUCAUCGGUUUGCCCUUCCAGUGUUACAUGGCUUUAUUACCAUGCAUUCAUGUUCUAUUAAUGGAAAAUACUUUGAUUGGAUUCUCAUCUCGAGGAGGAGCUGUUUCAGAGCUGGUGUGCGCUAUUAUGUAAGAGGAAUUGAUUCGGAAGGCCAUGCAGCUAACUUUGUAGAAACAGAACAAAUUGUGCACUACAAUGGGAGCAAAGCUUCGUUUGUACAGACUCGAGGAUCAAUACCUGUUUUCUGGUCCCAAAGACCAAACCUCAAGUACAAACCACUGCCACAGAUCAGCAAAGUAGCAAAUCACAUGGACGGUUUCCAAAGGCAUUUUGAUUCCCAAGUAAUUAUUUAUGGAAAACAAGUUAUAAUCAAUCUGAUUAACCAGAAGGGCUCGGAGAAGCCACUUGAGCAGACAUUUGCAACAAUGGUGUCUUCCUUGGGAAGUGGAAUGAUGAGAUACAUUGCCUUUGACUUCCAUAAGGAAUGUAAAAAUAUGAGAUGGGAUCGACUAAGUAUUUUAUUGGAUCAGGUAGCAGAAAUGCAAGAUGAAUUAAGUUAUUUUCUAGUGGACUCUGCUGGCCAGGUGGUGGCAAACCAGGAAGGCGUGUUCCGAAGCAAUUGCAUGGAUUGUCUAGAUAGAACCAAUGUGAUCCAGAGUUUGUUAGCUCGUCGUUCACUUCAGGCCCAACUUCAGAGACUAGGAGUUUUGCAUGUGGGACAAAAGCUUGAAGAACAAGAUGAAUUUGAGAAGAUUUACAAAAAUGCCUGGGCUGACAACGCAAAUGCUUGUGCCAAGCAAUAUGCGGGAACUGGUGCCUUGAAGACUGACU2000000009UUACCAGAACUGGAAAGAGAACUCAUUUGGGACUUAUAAUGGAUGGCUGGAACUCAAUGAUACGAUAUUAUAAGAACAACUUUUCCGAUGGAUUUAGACAAGAUUCCAUAGACUUAUUUCUUGGAAACUAUUCAGUGGAUGAAUUAGAAUCUCAUAGUCCU2000000009UUAAGUGUUCCAAGGGACUGGAAAUUCCUGGCUUUGCCUAUUAUCAUGGUUGUUGCCUUUUCAAUGUGCAUUAUCUGUUUGCUUAUGGCUGGUGACACUUGGACAGAAACACUGGCCUAUGUGCUCUUCUGGGGAGUUGCAAGCAUUGGAACAUUUUUUAUCAUUCU2000000009UUACAAUGGCAAAGAUUUUGUCGAUGCUCCCAGACUGGUCCAGAAAGAAAAGAUAG2000000006ACUGAAUUUGUAUUUGUGGAAAGCGGCUUGGCUUGGAAGAUUCCAUUGUGCAGAACUGGAGUCU2000000009UUACUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1376 1537 1704 1760 1824
Modification Positions Y Y Y m6A Y
Genomic Coordinates 3:45737838:+ 3:45738841:+ 3:45743609:+ 3:45743665:+ 3:45743729:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
93arJtwJmuS9
WiQcrNTGZHPT
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8