General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000470121
Gene ID:	ENSG00000163660
Gene Name:	CCNL1
Sequence (UNICHARACTER ENCODING)	AUGGCGUCCGGGCCUCAUUCGACAGCUACUGCUGCCGCAGCCGCCUCAUCGGCCGCCCCAAGCGCGGGCGGCUCCAGCUCCGGGACGACGACCACGACGACGACCACGACGGGAGGGAUCCUGAUCGGCGAUCGCCUGUACUCGGAAGUUUCACUUACCAUCGACCACUCUCUGAUUCCGGAGGAGAGGCUCUCGCCCACCCCAUCCAUGCAGGAUGGGCUCGACCUGCCCAGUGAGACGGACUUACGCAUCCUGGGCUGCGAGCUCAUCCAGGCCGCCGGCAUUCUCCUCCGGCUGCCGCAGGUGGCGAUGGCAACGGGGCAGGUGUUGUUUCAUCGUUUUUUCUACUCCAAAUCUUUCGUCAAACACAGUUUCGAGAUUGUUGCUAUGGCUUGUAUUAAUCUUGCAUCAAAAAUCGAAGAAGCACCUAGAAGAAUAAGAGAUGUGAUUAAUGUAUUCCACCACCUCCGCCAGUUAAGAGGAAAAAGGACUCCAAGCCCCCUGAUCCUUGAUCAGAACUACAUUAЖCACCAAAAAUCAAGUUAUCAAAGCAGAGAGGAGGGUGCUAAAGGAGUUGGGAUUUUGUGUUCAUGUCAAGCAPCCUCAUAAGAUCAUUGUUAUGUAUUUACAAGUCUUAGAAUGUGAACGUAAUCAAACCCUGGUUCAAACUGCCUGGGUAGUCCAUGAUGGUAAGUCAUAGAACUCUGCCCUCUGCACUUCAGCCCAUGЖCCUCAGGAUGGCCUGAUUGGCUACCCUGCUCUCCAGCCAAUCCAGUGCAAGCUCUCAUCCGAGAUUCACUGAAGUGGUCCAUAUCCAUCUGGCAGCAUCUUCUAGUUCUGUCGGGGUGUCAAAAGGAUUUGUAUAUUUGCUUCUAGAAUGUGUAUAGCAUGAAUACUACCAAAGGAGACGACAAACUUGCAGCUUAAAAUGGGCACCAGUUCCCACACUGGCUUAAUUUAUAUAACUGCUUGGCUGUAUUGCGGGAAUUACЖUGAAUGACAGUCUUCGAACCAAUGUGUUUGUUCGAUUUCAACCAGAGACUAUAGCAUGUGCUUGCAUCUACCUUGCAGCUAGAGCACUUCAGAUUCCGUUGCCAACUCGUCCCCAUUGGUUUCUUCUUUUUGGUACUACAGAAGAGGAAAUCCAGGAAAUCUGCAUAGAAACACUUAGGCUPUAUACCAGAAAAAAGCCAAACUAUGAAUUACUGGAAAAAGAAGUAGAAAAAAGAAAAGUAGCCUUACAAGAAGCCAAAUUAAAAGCAAAGGGAUUGAAUCCGGAUGGAACUCCAGCCCUUUCAACCCUGGGUGGAUUUUCUCCAGCCUCCAAGCCAUCAUCACCAAGAGAAGUAAAAGCUGAAGAGAAAUCACCAAUCUCCAUUAAUGUGAAGACAGUCAAAAAAGAACCUGAGGAUAGACAACAGGCUUCCAAAAGCCCUUACAAUGGUGUAAGAAAAGACAGCAAGAGAAGUAGAAAUAGCAGAAGUGCAAGUCGAUCGAGGUCAAGAACACGAUCACGUUCUAGAUCACAUACUCCAAGAAGACACUAUAAUAAUAGGCGGAGUCGAUCUGGAACAUACAGCUCGAGAUCAAGAAGCAGGUCCCGCAGUCACAGUGAAAGCCCUCGAAGACAUCAUAAUCAUGGUUCUCCUCACCUUAAGGCCAAGCAUACCAGAGAUGAUUUAAAAAGUUCAAЖCAGЖCAUGGUCAUAAAAGGAAAAAAUCUCGUUCUCGAUCUCAGAGCAAGUCUCGGGAUCACUCAGAUGCAGCCAAGAAACACAGGCAUGAAAGGGGACAUCAUAGGGACAGGCGUGAACGAUCUCGCUCCUUUGAGAGGUCCCAUAAAAGCAAGCACCAUGGUGGCAGUCGCUCAGGЖCAUGGCAGGCACAGGCGCUGЖ
Sequence (SHORT NAMES ENCODING)	AUGGCGUCCGGGCCUCAUUCGACAGCUACUGCUGCCGCAGCCGCCUCAUCGGCCGCCCCAAGCGCGGGCGGCUCCAGCUCCGGGACGACGACCACGACGACGACCACGACGGGAGGGAUCCUGAUCGGCGAUCGCCUGUACUCGGAAGUUUCACUUACCAUCGACCACUCUCUGAUUCCGGAGGAGAGGCUCUCGCCCACCCCAUCCAUGCAGGAUGGGCUCGACCUGCCCAGUGAGACGGACUUACGCAUCCUGGGCUGCGAGCUCAUCCAGGCCGCCGGCAUUCUCCUCCGGCUGCCGCAGGUGGCGAUGGCAACGGGGCAGGUGUUGUUUCAUCGUUUUUUCUACUCCAAAUCUUUCGUCAAACACAGUUUCGAGAUUGUUGCUAUGGCUUGUAUUAAUCUUGCAUCAAAAAUCGAAGAAGCACCUAGAAGAAUAAGAGAUGUGAUUAAUGUAUUCCACCACCUCCGCCAGUUAAGAGGAAAAAGGACUCCAAGCCCCCUGAUCCUUGAUCAGAACUACAUUAm6ACACCAAAAAUCAAGUUAUCAAAGCAGAGAGGAGGGUGCUAAAGGAGUUGGGAUUUUGUGUUCAUGUCAAGCAYCCUCAUAAGAUCAUUGUUAUGUAUUUACAAGUCUUAGAAUGUGAACGUAAUCAAACCCUGGUUCAAACUGCCUGGGUAGUCCAUGAUGGUAAGUCAUAGAACUCUGCCCUCUGCACUUCAGCCCAUGm6ACCUCAGGAUGGCCUGAUUGGCUACCCUGCUCUCCAGCCAAUCCAGUGCAAGCUCUCAUCCGAGAUUCACUGAAGUGGUCCAUAUCCAUCUGGCAGCAUCUUCUAGUUCUGUCGGGGUGUCAAAAGGAUUUGUAUAUUUGCUUCUAGAAUGUGUAUAGCAUGAAUACUACCAAAGGAGACGACAAACUUGCAGCUUAAAAUGGGCACCAGUUCCCACACUGGCUUAAUUUAUAUAACUGCUUGGCUGUAUUGCGGGAAUUACm6AUGAAUGACAGUCUUCGAACCAAUGUGUUUGUUCGAUUUCAACCAGAGACUAUAGCAUGUGCUUGCAUCUACCUUGCAGCUAGAGCACUUCAGAUUCCGUUGCCAACUCGUCCCCAUUGGUUUCUUCUUUUUGGUACUACAGAAGAGGAAAUCCAGGAAAUCUGCAUAGAAACACUUAGGCUYUAUACCAGAAAAAAGCCAAACUAUGAAUUACUGGAAAAAGAAGUAGAAAAAAGAAAAGUAGCCUUACAAGAAGCCAAAUUAAAAGCAAAGGGAUUGAAUCCGGAUGGAACUCCAGCCCUUUCAACCCUGGGUGGAUUUUCUCCAGCCUCCAAGCCAUCAUCACCAAGAGAAGUAAAAGCUGAAGAGAAAUCACCAAUCUCCAUUAAUGUGAAGACAGUCAAAAAAGAACCUGAGGAUAGACAACAGGCUUCCAAAAGCCCUUACAAUGGUGUAAGAAAAGACAGCAAGAGAAGUAGAAAUAGCAGAAGUGCAAGUCGAUCGAGGUCAAGAACACGAUCACGUUCUAGAUCACAUACUCCAAGAAGACACUAUAAUAAUAGGCGGAGUCGAUCUGGAACAUACAGCUCGAGAUCAAGAAGCAGGUCCCGCAGUCACAGUGAAAGCCCUCGAAGACAUCAUAAUCAUGGUUCUCCUCACCUUAAGGCCAAGCAUACCAGAGAUGAUUUAAAAAGUUCAAm6ACAGm6ACAUGGUCAUAAAAGGAAAAAAUCUCGUUCUCGAUCUCAGAGCAAGUCUCGGGAUCACUCAGAUGCAGCCAAGAAACACAGGCAUGAAAGGGGACAUCAUAGGGACAGGCGUGAACGAUCUCGCUCCUUUGAGAGGUCCCAUAAAAGCAAGCACCAUGGUGGCAGUCGCUCAGGm6ACAUGGCAGGCACAGGCGCUGm6A
Sequence (MODOMICS CODE ENCODING)	AUGGCGUCCGGGCCUCAUUCGACAGCUACUGCUGCCGCAGCCGCCUCAUCGGCCGCCCCAAGCGCGGGCGGCUCCAGCUCCGGGACGACGACCACGACGACGACCACGACGGGAGGGAUCCUGAUCGGCGAUCGCCUGUACUCGGAAGUUUCACUUACCAUCGACCACUCUCUGAUUCCGGAGGAGAGGCUCUCGCCCACCCCAUCCAUGCAGGAUGGGCUCGACCUGCCCAGUGAGACGGACUUACGCAUCCUGGGCUGCGAGCUCAUCCAGGCCGCCGGCAUUCUCCUCCGGCUGCCGCAGGUGGCGAUGGCAACGGGGCAGGUGUUGUUUCAUCGUUUUUUCUACUCCAAAUCUUUCGUCAAACACAGUUUCGAGAUUGUUGCUAUGGCUUGUAUUAAUCUUGCAUCAAAAAUCGAAGAAGCACCUAGAAGAAUAAGAGAUGUGAUUAAUGUAUUCCACCACCUCCGCCAGUUAAGAGGAAAAAGGACUCCAAGCCCCCUGAUCCUUGAUCAGAACUACAUUA2000000006ACACCAAAAAUCAAGUUAUCAAAGCAGAGAGGAGGGUGCUAAAGGAGUUGGGAUUUUGUGUUCAUGUCAAGCA2000000009UCCUCAUAAGAUCAUUGUUAUGUAUUUACAAGUCUUAGAAUGUGAACGUAAUCAAACCCUGGUUCAAACUGCCUGGGUAGUCCAUGAUGGUAAGUCAUAGAACUCUGCCCUCUGCACUUCAGCCCAUG2000000006ACCUCAGGAUGGCCUGAUUGGCUACCCUGCUCUCCAGCCAAUCCAGUGCAAGCUCUCAUCCGAGAUUCACUGAAGUGGUCCAUAUCCAUCUGGCAGCAUCUUCUAGUUCUGUCGGGGUGUCAAAAGGAUUUGUAUAUUUGCUUCUAGAAUGUGUAUAGCAUGAAUACUACCAAAGGAGACGACAAACUUGCAGCUUAAAAUGGGCACCAGUUCCCACACUGGCUUAAUUUAUAUAACUGCUUGGCUGUAUUGCGGGAAUUAC2000000006AUGAAUGACAGUCUUCGAACCAAUGUGUUUGUUCGAUUUCAACCAGAGACUAUAGCAUGUGCUUGCAUCUACCUUGCAGCUAGAGCACUUCAGAUUCCGUUGCCAACUCGUCCCCAUUGGUUUCUUCUUUUUGGUACUACAGAAGAGGAAAUCCAGGAAAUCUGCAUAGAAACACUUAGGCU2000000009UUAUACCAGAAAAAAGCCAAACUAUGAAUUACUGGAAAAAGAAGUAGAAAAAAGAAAAGUAGCCUUACAAGAAGCCAAAUUAAAAGCAAAGGGAUUGAAUCCGGAUGGAACUCCAGCCCUUUCAACCCUGGGUGGAUUUUCUCCAGCCUCCAAGCCAUCAUCACCAAGAGAAGUAAAAGCUGAAGAGAAAUCACCAAUCUCCAUUAAUGUGAAGACAGUCAAAAAAGAACCUGAGGAUAGACAACAGGCUUCCAAAAGCCCUUACAAUGGUGUAAGAAAAGACAGCAAGAGAAGUAGAAAUAGCAGAAGUGCAAGUCGAUCGAGGUCAAGAACACGAUCACGUUCUAGAUCACAUACUCCAAGAAGACACUAUAAUAAUAGGCGGAGUCGAUCUGGAACAUACAGCUCGAGAUCAAGAAGCAGGUCCCGCAGUCACAGUGAAAGCCCUCGAAGACAUCAUAAUCAUGGUUCUCCUCACCUUAAGGCCAAGCAUACCAGAGAUGAUUUAAAAAGUUCAA2000000006ACAG2000000006ACAUGGUCAUAAAAGGAAAAAAUCUCGUUCUCGAUCUCAGAGCAAGUCUCGGGAUCACUCAGAUGCAGCCAAGAAACACAGGCAUGAAAGGGGACAUCAUAGGGACAGGCGUGAACGAUCUCGCUCCUUUGAGAGGUCCCAUAAAAGCAAGCACCAUGGUGGCAGUCGCUCAGG2000000006ACAUGGCAGGCACAGGCGCUG2000000006A

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	527	600	728	990	1172	1690	1694	1868	1889
Modification Positions	m6A	Y	m6A	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	3:157153118:-	3:157153045:-	3:157151877:-	3:157150374:-	3:157150080:-	3:157148440:-	3:157148436:-	3:157148262:-	3:157148241:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	8cMbzB4aD5Se ArijeGVTwYBw BkoLW2CBToyL KTLz8piFYdwC nfCHyrYzE6fB	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	msuJfBpJvM5H BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8	jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BkoLW2CBToyL KTLz8piFYdwC Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 8cMbzB4aD5Se WiQcrNTGZHPT Lny8GcCeVGc9 LZJKems7W2wi BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8