General Data

RNA Type	pseudogene
Original Source	Sci-ModoM
Transcript ID:	ENST00000422486
Gene ID:	ENSG00000229638
Gene Name:	RPL4P4
Sequence (UNICHARACTER ENCODING)	AUGGCGUGUGCUCGCCCAAUGAUAUCGGUGUACUCCGAAAAGGGGGAGUCAUCUGGCAAAAAUGUCACUUAGCCUGCUGUAUUCAAGGCUCCUAUUCGACCAGAUAUUGUGAACUUUGUUCACACCAACUUGCGCAAAAACAACAGЖCAGCCCUACGCUGCCAGUGAAUUAGCAGGUCAUCAGACCAGUGCUGAGUCUUGGGGUACUGGCAGAGCUAUGGCUCGAAUUCCCAGAGUUCGAGGUGGUGGGACUCACCGCUCUGGCCAGGGUGCUUUUGGAAACAUGUGUCGUGGAGGCCGAAGGUUUGCACCAACCAAAACCUGGCGCCGUUGGCAUCGUAGAGUGAACACAACCCAAAAACGAUAUGCCAUCUGUPCUGCCCUGGCUGCCUCAGCCCUACCAGCACUGGUCAUGUCUAAAGGUCAUCGUAUUGAGGAAGUUCCUGAЖCUUCCUUUGGUAUUUGAAGAUAAAGUUGAAGGCUACAAGAAGACCAAGGAAGCUGUUUUGCUCCUUAAGAAЖCUUAAAGCCUGGAAUGAUAUCGAAAAGGUCUAUGCCUCUCAGCGAAUGAGAGCUGGCAAAGGCAAAAUGAGAAЖCCGUCGCCGUAUCCAGCGCAGGGGCCUGUGCAUCAUCUAUAAUGAGGAUAAUGGUAUCAUCAAGGCCUUCAGAAACAPCCCUGGAAUUACUCUGCUUAAUGUAAGCAAGCUGAACAUUUUGAAGCUUGCUCCUGGUGGGCAUGUGGGACGUUUCUGCAUUUGGЖCUGAAAGUGCUUUCCGGAAGUUAGAUGAAUUGUAUGGCACUUGGCGUAAAGCCGCUUCCCUCAAGAGUAЖCUACAAUCUUCCCAUGCACAAGUUGAUUAAUACЖGAUCUUAGCAGAAUCUUGAAAAGCCCAGAGAUCCAAAGAGCCCUUUGAGCACCACGCAAGAAGAUUCAUCGCAGAGUCCUAAAGAAGAACCCACUGAAAAACUUGAGAAUCAUGUUGAAGCUAAACCCAUAUGCAAAGACCAUGCGCCGGAACACCAUUCUUCGCCAGGCCAGGAAUCACAAGCUCCGGGUGGAUAAGGCAGCUGCUGCAGCAGCAGCACUACCAGCCAAAUCAGAUGAAAAGGCGGCGGUUGCAGGCAAGAAGCCUGUGGUAGGUAAGAAAGGAAAGAAGGCUGCUGUUGGUGUUAAGAAGCAGAAGAAGCCUCUGGUGGGAAAAAAGGCAGCAGCUACCAAGAAЖCCAGCCCCUGAAAAGAAGCCUGCAGAAAAGAAACCUACUACAGAGGAAAAGAAGCCUGCUGCAUAA
Sequence (SHORT NAMES ENCODING)	AUGGCGUGUGCUCGCCCAAUGAUAUCGGUGUACUCCGAAAAGGGGGAGUCAUCUGGCAAAAAUGUCACUUAGCCUGCUGUAUUCAAGGCUCCUAUUCGACCAGAUAUUGUGAACUUUGUUCACACCAACUUGCGCAAAAACAACAGm6ACAGCCCUACGCUGCCAGUGAAUUAGCAGGUCAUCAGACCAGUGCUGAGUCUUGGGGUACUGGCAGAGCUAUGGCUCGAAUUCCCAGAGUUCGAGGUGGUGGGACUCACCGCUCUGGCCAGGGUGCUUUUGGAAACAUGUGUCGUGGAGGCCGAAGGUUUGCACCAACCAAAACCUGGCGCCGUUGGCAUCGUAGAGUGAACACAACCCAAAAACGAUAUGCCAUCUGUYCUGCCCUGGCUGCCUCAGCCCUACCAGCACUGGUCAUGUCUAAAGGUCAUCGUAUUGAGGAAGUUCCUGAm6ACUUCCUUUGGUAUUUGAAGAUAAAGUUGAAGGCUACAAGAAGACCAAGGAAGCUGUUUUGCUCCUUAAGAAm6ACUUAAAGCCUGGAAUGAUAUCGAAAAGGUCUAUGCCUCUCAGCGAAUGAGAGCUGGCAAAGGCAAAAUGAGAAm6ACCGUCGCCGUAUCCAGCGCAGGGGCCUGUGCAUCAUCUAUAAUGAGGAUAAUGGUAUCAUCAAGGCCUUCAGAAACAYCCCUGGAAUUACUCUGCUUAAUGUAAGCAAGCUGAACAUUUUGAAGCUUGCUCCUGGUGGGCAUGUGGGACGUUUCUGCAUUUGGm6ACUGAAAGUGCUUUCCGGAAGUUAGAUGAAUUGUAUGGCACUUGGCGUAAAGCCGCUUCCCUCAAGAGUAm6ACUACAAUCUUCCCAUGCACAAGUUGAUUAAUACm6AGAUCUUAGCAGAAUCUUGAAAAGCCCAGAGAUCCAAAGAGCCCUUUGAGCACCACGCAAGAAGAUUCAUCGCAGAGUCCUAAAGAAGAACCCACUGAAAAACUUGAGAAUCAUGUUGAAGCUAAACCCAUAUGCAAAGACCAUGCGCCGGAACACCAUUCUUCGCCAGGCCAGGAAUCACAAGCUCCGGGUGGAUAAGGCAGCUGCUGCAGCAGCAGCACUACCAGCCAAAUCAGAUGAAAAGGCGGCGGUUGCAGGCAAGAAGCCUGUGGUAGGUAAGAAAGGAAAGAAGGCUGCUGUUGGUGUUAAGAAGCAGAAGAAGCCUCUGGUGGGAAAAAAGGCAGCAGCUACCAAGAAm6ACCAGCCCCUGAAAAGAAGCCUGCAGAAAAGAAACCUACUACAGAGGAAAAGAAGCCUGCUGCAUAA
Sequence (MODOMICS CODE ENCODING)	AUGGCGUGUGCUCGCCCAAUGAUAUCGGUGUACUCCGAAAAGGGGGAGUCAUCUGGCAAAAAUGUCACUUAGCCUGCUGUAUUCAAGGCUCCUAUUCGACCAGAUAUUGUGAACUUUGUUCACACCAACUUGCGCAAAAACAACAG2000000006ACAGCCCUACGCUGCCAGUGAAUUAGCAGGUCAUCAGACCAGUGCUGAGUCUUGGGGUACUGGCAGAGCUAUGGCUCGAAUUCCCAGAGUUCGAGGUGGUGGGACUCACCGCUCUGGCCAGGGUGCUUUUGGAAACAUGUGUCGUGGAGGCCGAAGGUUUGCACCAACCAAAACCUGGCGCCGUUGGCAUCGUAGAGUGAACACAACCCAAAAACGAUAUGCCAUCUGU2000000009UCUGCCCUGGCUGCCUCAGCCCUACCAGCACUGGUCAUGUCUAAAGGUCAUCGUAUUGAGGAAGUUCCUGA2000000006ACUUCCUUUGGUAUUUGAAGAUAAAGUUGAAGGCUACAAGAAGACCAAGGAAGCUGUUUUGCUCCUUAAGAA2000000006ACUUAAAGCCUGGAAUGAUAUCGAAAAGGUCUAUGCCUCUCAGCGAAUGAGAGCUGGCAAAGGCAAAAUGAGAA2000000006ACCGUCGCCGUAUCCAGCGCAGGGGCCUGUGCAUCAUCUAUAAUGAGGAUAAUGGUAUCAUCAAGGCCUUCAGAAACA2000000009UCCCUGGAAUUACUCUGCUUAAUGUAAGCAAGCUGAACAUUUUGAAGCUUGCUCCUGGUGGGCAUGUGGGACGUUUCUGCAUUUGG2000000006ACUGAAAGUGCUUUCCGGAAGUUAGAUGAAUUGUAUGGCACUUGGCGUAAAGCCGCUUCCCUCAAGAGUA2000000006ACUACAAUCUUCCCAUGCACAAGUUGAUUAAUAC2000000006AGAUCUUAGCAGAAUCUUGAAAAGCCCAGAGAUCCAAAGAGCCCUUUGAGCACCACGCAAGAAGAUUCAUCGCAGAGUCCUAAAGAAGAACCCACUGAAAAACUUGAGAAUCAUGUUGAAGCUAAACCCAUAUGCAAAGACCAUGCGCCGGAACACCAUUCUUCGCCAGGCCAGGAAUCACAAGCUCCGGGUGGAUAAGGCAGCUGCUGCAGCAGCAGCACUACCAGCCAAAUCAGAUGAAAAGGCGGCGGUUGCAGGCAAGAAGCCUGUGGUAGGUAAGAAAGGAAAGAAGGCUGCUGUUGGUGUUAAGAAGCAGAAGAAGCCUCUGGUGGGAAAAAAGGCAGCAGCUACCAAGAA2000000006ACCAGCCCCUGAAAAGAAGCCUGCAGAAAAGAAACCUACUACAGAGGAAAAGAAGCCUGCUGCAUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	147	376	447	519	593	671	757	827	861	1218
Modification Positions	m6A	Y	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	3:185418632:-	3:185418403:-	3:185418332:-	3:185418260:-	3:185418186:-	3:185418108:-	3:185418022:-	3:185417952:-	3:185417918:-	3:185417561:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	VyCX26p5UBRL ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT KjeH7Nsffuas LZJKems7W2wi BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq f6YSioLdAWpr JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8