General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000467610
Gene ID:	ENSG00000134107
Gene Name:	BHLHE40
Sequence (UNICHARACTER ENCODING)	AUUCACUUGGCUCGCACGGCGCAGACAGACCGCGCAGGGAGCACACACCGCCAGUCUGUGCGCUGAGUCGGAGCCAGAGGCCGCGGGGACACCGGGCCAUGCACGCCCCCAACUGAAGCUGCAUCUCAAAGCCGAAGAUUCCAGCAGCCCAGGGGAUUUCAAAGAGCUCAGACUCAGAGGAACAUCUGCGGAGAGЖCCCCCGAAGCCCUCUCCAGGGCAGUCCUCAUCCAGACGCUCCGCUAGUGCAGACAGGAGCGCGCAGUGGCCCCGGCUCGCCGCGCCAUGGAGCGGAUCCCCAGCGCGCAACCACCCCCCGCCUGCCUGCCCAAAGCACCGGGACUGGAGCACGGAGЖCCUACCAGGGAUGUACCCUGCCCACAUGUACCAAGUGUACAAGUCAAGACGGGGAAUAAAGCGGAGCGAGGACAGCAAGGUAAGCAAGUGCACCCCUAGGGACCCUGCGCUCAGCCCCUCGCGCGCGCUGAGUUUCCAAGAAAAGUUUUCUCGCUUUGAGGUUGGCGAGGGGAUGCAGGGUGUGGGCUCGGUGCCUCUUCUGAGUGACUUGGAAAAGAAAGGGCAGACGAUGGUUCUGGGUGCUACUCUGCUACUCUGCUCCUCUGCCGGACUGUUGCUGCGGGGCUGGGAGGAUAGGCUUCUCAUCUCCUUCCCCAAGCGCCCACCGCCUCCCCGUGCGUCUUGCAGGAGACCUACAAAUUGCCGCACCGGCUCAUCGAGAAAAAGAGACGUGACCGGAUUAACGAGUGCAUCGCCCAGCUGAAGGAUCUCCUACCCGAACAUCUCAAACUUACAACUUUGGGUCACUUGGAAAAAGCAGUGGUUCUUGAACUUACCUUGAAGCAUGUGAAAGCACUAACAAACCUAAUUGAUCAGCAGCAGCAGAAAAUCAUUGCCCUGCAGAGUGGUUUACAAGCUGGUGAGCUGUCAGGGAGAAAUGUCGAAACAGGUCAAGAGAUGUUCUGCUCAGGUUUCCAGACAUGUGCCCGGGAGGUGCUUCAGUAUCUGGCCAAGCACGAGAACACUCGGGACCUGAAGUCUUCGCAGCUUGUCACCCACCUCCACCGGGUGGUCUCGGAGCUGCUGCAGGGUGGUACCPCCAGGAAGCCAUCAGACCCAGCUCCCAAAGUGAUGGЖCUUCAAGGAAAAACCCAGCUCUCCGGCCAAAGGUUCGGAAGGUCCUGGGAAAAACUGCGUGCCAGUCAPCCAGCGGЖCUUUCGCUCACUCGAGUGGGGAGCAGAGCGGCAGCGACACGGЖCACAGЖCAGUGGCUAUGGAGGAGAAUCGGAGAAGGGCGACUUGCGCAGUGAGCAGCCGUGCUUCAAAAGUGACCACGGACGCAGGUUCACGAUGGG
Sequence (SHORT NAMES ENCODING)	AUUCACUUGGCUCGCACGGCGCAGACAGACCGCGCAGGGAGCACACACCGCCAGUCUGUGCGCUGAGUCGGAGCCAGAGGCCGCGGGGACACCGGGCCAUGCACGCCCCCAACUGAAGCUGCAUCUCAAAGCCGAAGAUUCCAGCAGCCCAGGGGAUUUCAAAGAGCUCAGACUCAGAGGAACAUCUGCGGAGAGm6ACCCCCGAAGCCCUCUCCAGGGCAGUCCUCAUCCAGACGCUCCGCUAGUGCAGACAGGAGCGCGCAGUGGCCCCGGCUCGCCGCGCCAUGGAGCGGAUCCCCAGCGCGCAACCACCCCCCGCCUGCCUGCCCAAAGCACCGGGACUGGAGCACGGAGm6ACCUACCAGGGAUGUACCCUGCCCACAUGUACCAAGUGUACAAGUCAAGACGGGGAAUAAAGCGGAGCGAGGACAGCAAGGUAAGCAAGUGCACCCCUAGGGACCCUGCGCUCAGCCCCUCGCGCGCGCUGAGUUUCCAAGAAAAGUUUUCUCGCUUUGAGGUUGGCGAGGGGAUGCAGGGUGUGGGCUCGGUGCCUCUUCUGAGUGACUUGGAAAAGAAAGGGCAGACGAUGGUUCUGGGUGCUACUCUGCUACUCUGCUCCUCUGCCGGACUGUUGCUGCGGGGCUGGGAGGAUAGGCUUCUCAUCUCCUUCCCCAAGCGCCCACCGCCUCCCCGUGCGUCUUGCAGGAGACCUACAAAUUGCCGCACCGGCUCAUCGAGAAAAAGAGACGUGACCGGAUUAACGAGUGCAUCGCCCAGCUGAAGGAUCUCCUACCCGAACAUCUCAAACUUACAACUUUGGGUCACUUGGAAAAAGCAGUGGUUCUUGAACUUACCUUGAAGCAUGUGAAAGCACUAACAAACCUAAUUGAUCAGCAGCAGCAGAAAAUCAUUGCCCUGCAGAGUGGUUUACAAGCUGGUGAGCUGUCAGGGAGAAAUGUCGAAACAGGUCAAGAGAUGUUCUGCUCAGGUUUCCAGACAUGUGCCCGGGAGGUGCUUCAGUAUCUGGCCAAGCACGAGAACACUCGGGACCUGAAGUCUUCGCAGCUUGUCACCCACCUCCACCGGGUGGUCUCGGAGCUGCUGCAGGGUGGUACCYCCAGGAAGCCAUCAGACCCAGCUCCCAAAGUGAUGGm6ACUUCAAGGAAAAACCCAGCUCUCCGGCCAAAGGUUCGGAAGGUCCUGGGAAAAACUGCGUGCCAGUCAYCCAGCGGm6ACUUUCGCUCACUCGAGUGGGGAGCAGAGCGGCAGCGACACGGm6ACACAGm6ACAGUGGCUAUGGAGGAGAAUCGGAGAAGGGCGACUUGCGCAGUGAGCAGCCGUGCUUCAAAAGUGACCACGGACGCAGGUUCACGAUGGG
Sequence (MODOMICS CODE ENCODING)	AUUCACUUGGCUCGCACGGCGCAGACAGACCGCGCAGGGAGCACACACCGCCAGUCUGUGCGCUGAGUCGGAGCCAGAGGCCGCGGGGACACCGGGCCAUGCACGCCCCCAACUGAAGCUGCAUCUCAAAGCCGAAGAUUCCAGCAGCCCAGGGGAUUUCAAAGAGCUCAGACUCAGAGGAACAUCUGCGGAGAG2000000006ACCCCCGAAGCCCUCUCCAGGGCAGUCCUCAUCCAGACGCUCCGCUAGUGCAGACAGGAGCGCGCAGUGGCCCCGGCUCGCCGCGCCAUGGAGCGGAUCCCCAGCGCGCAACCACCCCCCGCCUGCCUGCCCAAAGCACCGGGACUGGAGCACGGAG2000000006ACCUACCAGGGAUGUACCCUGCCCACAUGUACCAAGUGUACAAGUCAAGACGGGGAAUAAAGCGGAGCGAGGACAGCAAGGUAAGCAAGUGCACCCCUAGGGACCCUGCGCUCAGCCCCUCGCGCGCGCUGAGUUUCCAAGAAAAGUUUUCUCGCUUUGAGGUUGGCGAGGGGAUGCAGGGUGUGGGCUCGGUGCCUCUUCUGAGUGACUUGGAAAAGAAAGGGCAGACGAUGGUUCUGGGUGCUACUCUGCUACUCUGCUCCUCUGCCGGACUGUUGCUGCGGGGCUGGGAGGAUAGGCUUCUCAUCUCCUUCCCCAAGCGCCCACCGCCUCCCCGUGCGUCUUGCAGGAGACCUACAAAUUGCCGCACCGGCUCAUCGAGAAAAAGAGACGUGACCGGAUUAACGAGUGCAUCGCCCAGCUGAAGGAUCUCCUACCCGAACAUCUCAAACUUACAACUUUGGGUCACUUGGAAAAAGCAGUGGUUCUUGAACUUACCUUGAAGCAUGUGAAAGCACUAACAAACCUAAUUGAUCAGCAGCAGCAGAAAAUCAUUGCCCUGCAGAGUGGUUUACAAGCUGGUGAGCUGUCAGGGAGAAAUGUCGAAACAGGUCAAGAGAUGUUCUGCUCAGGUUUCCAGACAUGUGCCCGGGAGGUGCUUCAGUAUCUGGCCAAGCACGAGAACACUCGGGACCUGAAGUCUUCGCAGCUUGUCACCCACCUCCACCGGGUGGUCUCGGAGCUGCUGCAGGGUGGUACC2000000009UCCAGGAAGCCAUCAGACCCAGCUCCCAAAGUGAUGG2000000006ACUUCAAGGAAAAACCCAGCUCUCCGGCCAAAGGUUCGGAAGGUCCUGGGAAAAACUGCGUGCCAGUCA2000000009UCCAGCGG2000000006ACUUUCGCUCACUCGAGUGGGGAGCAGAGCGGCAGCGACACGG2000000006ACACAG2000000006ACAGUGGCUAUGGAGGAGAAUCGGAGAAGGGCGACUUGCGCAGUGAGCAGCCGUGCUUCAAAAGUGACCACGGACGCAGGUUCACGAUGGG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	196	353	1113	1150	1219	1227	1270	1276
Modification Positions	m6A	m6A	Y	m6A	Y	m6A	m6A	m6A
Genomic Coordinates	3:4979632:+	3:4979789:+	3:4983015:+	3:4983052:+	3:4983121:+	3:4983129:+	3:4983172:+	3:4983178:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT Lny8GcCeVGc9 bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL nfCHyrYzE6fB WiQcrNTGZHPT Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 BkoLW2CBToyL nfCHyrYzE6fB WiQcrNTGZHPT bXBqJigD9oV3 f6YSioLdAWpr	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8